Wall clock time and date at job start Tue Mar 31 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35926 * 116.99858 * 2 1 4 4 C 1.38703 * 120.06065 * 359.97354 * 3 2 1 5 5 C 1.38148 * 119.95943 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.07376 * 359.72370 * 5 4 3 7 7 C 1.38240 * 120.11773 * 0.55266 * 6 5 4 8 8 C 1.50706 * 119.98055 * 179.72367 * 7 6 5 9 9 N 1.46898 * 109.46877 * 259.72704 * 8 7 6 10 10 C 1.47476 * 110.99840 * 265.96766 * 9 8 7 11 11 C 1.53517 * 87.93480 * 221.29767 * 10 9 8 12 12 C 1.50707 * 114.34438 * 139.68077 * 11 10 9 13 13 H 1.08002 * 119.99932 * 266.07886 * 12 11 10 14 14 C 1.37873 * 119.99767 * 86.08036 * 12 11 10 15 15 N 1.31514 * 119.99966 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99960 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47095 * 60.00008 * 16 14 12 18 18 H 1.48501 * 109.47173 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47013 * 299.99800 * 16 14 12 20 20 C 1.47484 * 110.99867 * 169.99858 * 9 8 7 21 21 C 1.38257 * 120.04574 * 359.45041 * 7 6 5 22 22 Cl 1.73593 * 120.04354 * 180.29727 * 21 7 6 23 23 H 1.08997 * 109.46975 * 60.00430 * 1 2 3 24 24 H 1.09001 * 109.47108 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47557 * 300.00241 * 1 2 3 26 26 H 1.08007 * 120.02445 * 0.04711 * 4 3 2 27 27 H 1.08001 * 119.96830 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.94278 * 180.27545 * 6 5 4 29 29 H 1.09000 * 109.46628 * 19.72370 * 8 7 6 30 30 H 1.08997 * 109.47222 * 139.72218 * 8 7 6 31 31 H 1.09001 * 113.47584 * 336.06436 * 10 9 8 32 32 H 1.08997 * 113.47790 * 106.53620 * 10 9 8 33 33 H 1.08991 * 114.17041 * 272.37867 * 11 10 9 34 34 H 0.96996 * 120.00042 * 179.97438 * 15 14 12 35 35 H 1.09004 * 113.47449 * 253.46817 * 20 9 8 36 36 H 1.09001 * 113.47762 * 23.87105 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3752 -0.0006 5 6 1.9212 3.6050 -0.0011 6 6 3.3021 3.6767 0.0047 7 6 4.0569 2.5186 -0.0005 8 6 5.5618 2.6004 -0.0005 9 7 6.0638 2.3863 -1.3643 10 6 6.4087 0.9694 -1.5841 11 6 7.6580 1.4479 -2.3370 12 6 8.8995 0.6409 -2.0565 13 1 9.5872 0.9581 -1.2865 14 6 9.1574 -0.5023 -2.7828 15 7 8.3197 -0.8887 -3.7201 16 14 10.6958 -1.5029 -2.4346 17 1 10.6736 -1.9706 -1.0254 18 1 10.7405 -2.6752 -3.3451 19 1 11.8967 -0.6581 -2.6570 20 6 7.5039 2.6924 -1.4515 21 6 3.4323 1.2852 0.0000 22 17 4.3802 -0.1691 0.0012 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2132 2.3202 -0.0002 27 1 1.3340 4.5115 -0.0011 28 1 3.7919 4.6393 0.0088 29 1 5.8720 3.5846 0.3506 30 1 5.9673 1.8344 0.6605 31 1 6.6358 0.4301 -0.6645 32 1 5.6954 0.4421 -2.2176 33 1 7.4957 1.6328 -3.3988 34 1 8.5013 -1.6928 -4.2314 35 1 7.7187 3.6254 -1.9726 36 1 8.0231 2.6140 -0.4964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237186141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:08 Heat of formation + Delta-G solvation = 1.637610 kcal Electronic energy + Delta-G solvation = -19659.780580 eV Core-core repulsion = 16556.653269 eV Total energy + Delta-G solvation = -3103.127311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.33584 -40.52364 -38.51753 -37.28667 -34.83987 -33.27264 -31.34851 -30.01934 -28.19835 -27.24076 -26.53516 -24.46374 -23.47229 -21.96449 -20.50236 -19.01206 -18.51821 -17.46968 -17.24406 -16.89205 -16.65504 -16.35909 -15.79708 -15.34498 -15.26292 -14.84587 -14.29971 -14.14754 -13.76172 -13.49013 -13.22256 -12.99279 -12.85265 -12.75478 -12.48709 -12.43042 -12.15511 -12.02350 -11.97446 -11.63892 -11.45999 -11.16343 -10.79941 -10.43655 -9.77199 -9.58805 -9.15903 -8.13621 -6.24832 0.15420 0.34738 1.30927 1.41694 1.43511 1.51155 2.28016 2.42453 2.61480 3.15519 3.44662 3.70597 3.87006 4.00173 4.22344 4.26772 4.32383 4.38781 4.40037 4.43724 4.57840 4.63560 4.72538 4.78111 4.80924 4.89788 4.98565 5.11356 5.31133 5.31425 5.45735 5.55066 5.63448 5.72411 5.86651 6.30786 6.33727 6.38608 6.84233 7.43099 8.96117 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.004837 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.026509 B = 5787.302885 C = 6531.037745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.120 3.880 4 C -0.199 4.199 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.037 4.037 8 C 0.053 3.947 9 N -0.475 5.475 10 C 0.033 3.967 11 C 0.014 3.986 12 C -0.529 4.529 13 H 0.061 0.939 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.012 3.988 21 C -0.094 4.094 22 Cl -0.075 7.075 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.170 0.830 28 H 0.152 0.848 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 8.054 10.214 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.073 3.927 4 C -0.218 4.218 5 C -0.086 4.086 6 C -0.156 4.156 7 C -0.039 4.039 8 C -0.075 4.075 9 N -0.197 5.197 10 C -0.096 4.096 11 C -0.005 4.005 12 C -0.568 4.568 13 H 0.079 0.921 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.117 4.117 21 C -0.121 4.121 22 Cl -0.046 7.046 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.093 0.907 26 H 0.184 0.816 27 H 0.187 0.813 28 H 0.170 0.830 29 H 0.122 0.878 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.188 7.942 9.682 21.266 hybrid contribution 1.226 -1.498 0.415 1.980 sum -15.962 6.444 10.097 19.956 Atomic orbital electron populations 1.23403 0.75910 1.05637 1.02705 1.86149 1.23934 1.26259 1.88415 1.18886 0.90034 0.86385 0.97373 1.21539 1.01437 0.90880 1.07938 1.21437 0.94017 0.98318 0.94810 1.21218 0.94381 0.97409 1.02598 1.19616 0.95796 0.91266 0.97185 1.21685 0.90984 1.02835 0.91981 1.68853 1.15926 1.12079 1.22883 1.23835 0.97492 0.89481 0.98774 1.20120 0.93470 0.92751 0.94145 1.21346 1.07372 1.08895 1.19143 0.92111 1.25832 0.99456 0.98690 0.94506 1.70105 1.38057 1.24717 1.23254 0.85651 0.80067 0.78114 0.78098 1.19613 1.21110 1.18992 1.23840 0.88240 0.99803 0.99778 1.20470 0.89732 0.88518 1.13404 1.98380 1.71668 1.37537 1.97034 0.91365 0.86740 0.90738 0.81608 0.81259 0.83002 0.87837 0.93641 0.93041 0.94629 0.95431 0.92969 0.90199 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.18 9.96 -92.72 -0.92 -10.11 16 3 C 0.12 3.43 6.68 22.52 0.15 3.58 16 4 C -0.20 -4.08 9.04 22.36 0.20 -3.88 16 5 C -0.07 -1.27 10.04 22.26 0.22 -1.05 16 6 C -0.14 -3.26 9.66 22.28 0.22 -3.04 16 7 C -0.04 -1.18 5.47 -19.86 -0.11 -1.29 16 8 C 0.05 1.82 4.68 85.56 0.40 2.22 16 9 N -0.48 -19.81 6.32 -932.48 -5.89 -25.70 16 10 C 0.03 1.65 5.13 83.58 0.43 2.08 16 11 C 0.01 0.76 3.76 -11.19 -0.04 0.72 16 12 C -0.53 -29.85 8.83 25.60 0.23 -29.62 16 13 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 14 C 0.01 0.82 5.46 84.65 0.46 1.28 16 15 N -0.92 -56.20 13.26 21.45 0.28 -55.91 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.01 0.50 7.25 83.57 0.61 1.11 16 21 C -0.09 -3.21 6.33 22.41 0.14 -3.06 16 22 Cl -0.08 -2.95 23.07 -2.72 -0.06 -3.01 16 23 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 26 H 0.17 2.16 6.30 -2.91 -0.02 2.14 16 27 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.15 2.86 8.03 -2.91 -0.02 2.84 16 29 H 0.10 2.92 7.94 -2.39 -0.02 2.90 16 30 H 0.05 1.67 6.53 -2.39 -0.02 1.65 16 31 H 0.05 2.59 6.08 -2.39 -0.01 2.57 16 32 H 0.04 1.92 7.69 -2.39 -0.02 1.90 16 33 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 35 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.06 2.58 7.87 -2.39 -0.02 2.56 16 Total: -1.00 -69.74 309.95 0.53 -69.21 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.08 Total: 8.60 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.02 Total: -29.58 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -5.60 Total: -81.61 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.92 Total: -10.11 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.06 Total: -3.01 kcal Total: -69.74 0.53 -69.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237186141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.843 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds