Wall clock time and date at job start Tue Mar 31 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35753 * 116.99545 * 2 1 4 4 C 1.38296 * 120.14094 * 359.97438 * 3 2 1 5 5 C 1.39622 * 119.81725 * 180.02562 * 4 3 2 6 6 C 1.43199 * 119.96070 * 180.02562 * 5 4 3 7 7 N 5.83924 * 81.31711 * 359.97438 * 2 1 3 8 8 C 1.39915 * 120.07846 * 359.97438 * 5 4 3 9 9 C 1.36480 * 120.27228 * 359.75706 * 8 5 4 10 10 C 1.39854 * 120.18874 * 0.52254 * 9 8 5 11 11 C 1.47509 * 120.04665 * 179.73456 * 10 9 8 12 12 N 1.33089 * 120.55215 * 129.77435 * 11 10 9 13 13 C 1.31855 * 120.02988 * 180.28009 * 12 11 10 14 14 C 1.39087 * 121.22471 * 359.69595 * 13 12 11 15 15 N 1.31489 * 121.14828 * 0.02922 * 14 13 12 16 16 C 1.34108 * 119.86111 * 359.97096 * 15 14 13 17 17 C 1.40698 * 120.58368 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00179 * 171.81011 * 17 16 15 19 19 C 1.40200 * 119.99615 * 351.80290 * 17 16 15 20 20 N 1.30672 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99689 * 180.27863 * 19 17 16 22 22 H 1.48495 * 109.46899 * 179.72819 * 21 19 17 23 23 H 1.48503 * 109.46830 * 299.72457 * 21 19 17 24 24 H 1.48495 * 109.47372 * 59.72253 * 21 19 17 25 25 H 1.09000 * 109.47373 * 60.00250 * 1 2 3 26 26 H 1.09005 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47451 * 300.00288 * 1 2 3 28 28 H 1.08008 * 120.08654 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.86412 * 180.02562 * 8 5 4 30 30 H 1.07999 * 119.90648 * 180.27563 * 9 8 5 31 31 H 1.07999 * 119.38482 * 179.67726 * 13 12 11 32 32 H 1.08001 * 119.42635 * 180.02562 * 14 13 12 33 33 H 0.96999 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.2947 2.3713 -0.0005 5 6 1.9355 3.6117 -0.0011 6 6 1.1615 4.8165 -0.0011 7 7 0.5474 5.7723 -0.0026 8 6 3.3330 3.6791 -0.0005 9 6 4.0770 2.5349 0.0055 10 6 3.4469 1.2863 0.0002 11 6 4.2541 0.0517 0.0009 12 7 4.0069 -0.9177 0.8786 13 6 4.7384 -2.0147 0.8736 14 6 5.7710 -2.1886 -0.0419 15 7 6.0526 -1.2638 -0.9332 16 6 5.3370 -0.1302 -0.9682 17 6 5.6249 0.8691 -1.9158 18 1 4.9644 1.7166 -2.0245 19 6 6.7694 0.7648 -2.7189 20 7 7.5684 -0.2608 -2.5875 21 14 7.1558 2.0955 -3.9716 22 1 8.4142 1.7553 -4.6829 23 1 6.0438 2.1910 -4.9512 24 1 7.3165 3.3980 -3.2767 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2159 2.3189 -0.0005 29 1 3.8251 4.6405 -0.0005 30 1 5.1554 2.5938 0.0104 31 1 4.5322 -2.7925 1.5939 32 1 6.3516 -3.0990 -0.0203 33 1 8.3600 -0.3332 -3.1434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241388043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:55 Heat of formation + Delta-G solvation = 58.791058 kcal Electronic energy + Delta-G solvation = -20760.739084 eV Core-core repulsion = 17558.982639 eV Total energy + Delta-G solvation = -3201.756445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95195 -38.53717 -37.45028 -35.99306 -34.24069 -32.64714 -31.53274 -29.99826 -29.15409 -27.07843 -26.29533 -24.23434 -22.21850 -21.55727 -21.17869 -19.09630 -17.74372 -16.51362 -16.20409 -16.08205 -15.54055 -15.35384 -14.86663 -14.32139 -13.89761 -13.75621 -13.70444 -13.45107 -12.95127 -12.75416 -12.43188 -12.25927 -12.06492 -11.71342 -11.62767 -11.46514 -11.16570 -11.02840 -10.74219 -10.65699 -10.38922 -9.94783 -9.62505 -9.26995 -8.61216 -8.10122 -7.60494 -7.37204 -6.67311 -4.83165 0.96408 1.78769 2.35421 2.79766 2.85393 2.92955 2.94733 3.11417 3.32620 3.65487 3.70327 4.09255 4.20374 4.50094 5.02982 5.17891 5.26260 5.33765 5.34202 5.57893 5.64822 5.70093 5.88875 6.02676 6.07496 6.16654 6.26133 6.49676 6.57714 6.70885 6.78829 6.88390 6.96989 7.17882 7.56961 7.62261 7.79330 7.87796 8.22520 8.50249 9.17316 9.72366 9.91791 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.007192 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.557764 B = 3892.410081 C = 5473.795120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.287 6.287 3 C 0.129 3.871 4 C -0.164 4.164 5 C -0.027 4.027 6 C 0.270 3.730 7 N -0.443 5.443 8 C -0.102 4.102 9 C -0.075 4.075 10 C 0.041 3.959 11 C -0.040 4.040 12 N -0.391 5.391 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.461 5.461 16 C 0.226 3.774 17 C -0.394 4.394 18 H 0.099 0.901 19 C 0.064 3.936 20 N -0.699 5.699 21 Si 0.911 3.089 22 H -0.274 1.274 23 H -0.260 1.260 24 H -0.258 1.258 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 2.029 1.270 5.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.199 6.199 3 C 0.082 3.918 4 C -0.185 4.185 5 C -0.031 4.031 6 C -0.044 4.044 7 N -0.119 5.119 8 C -0.123 4.123 9 C -0.094 4.094 10 C 0.038 3.962 11 C -0.188 4.188 12 N -0.103 5.103 13 C -0.285 4.285 14 C -0.076 4.076 15 N -0.177 5.177 16 C 0.101 3.899 17 C -0.423 4.423 18 H 0.116 0.884 19 C -0.164 4.164 20 N -0.318 5.318 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.184 1.184 24 H -0.182 1.182 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.712 3.156 1.171 6.630 hybrid contribution 0.176 0.043 -0.549 0.579 sum -5.536 3.198 0.622 6.423 Atomic orbital electron populations 1.23027 0.79776 1.03597 1.00680 1.86292 1.19792 1.25730 1.88093 1.18942 0.91625 0.83844 0.97358 1.20966 0.99595 0.90670 1.07272 1.15646 0.91727 0.86346 1.09366 1.25829 0.92889 0.92837 0.92869 1.81192 1.09318 1.11003 1.10345 1.20631 0.91090 0.99175 1.01377 1.20884 1.01070 0.89721 0.97750 1.17966 0.88425 0.92826 0.96981 1.20932 1.02159 0.94667 1.00999 1.67760 1.23008 0.99545 1.19952 1.22397 1.01584 0.98411 1.06082 1.23423 0.94440 0.97873 0.91817 1.69557 1.26628 1.00745 1.20738 1.20325 0.87421 0.91218 0.90931 1.19750 1.05381 1.04816 1.12364 0.88356 1.26243 0.95774 0.96635 0.97793 1.70022 1.08000 1.24250 1.29509 0.86290 0.78962 0.81069 0.80327 1.19865 1.18396 1.18201 0.93141 0.88622 0.93051 0.85249 0.85340 0.83664 0.85687 0.85449 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.30 16 2 O -0.29 -5.18 9.51 -18.97 -0.18 -5.36 16 3 C 0.13 2.31 6.67 -38.75 -0.26 2.05 16 4 C -0.16 -2.43 8.73 -39.04 -0.34 -2.77 16 5 C -0.03 -0.39 5.74 -106.83 -0.61 -1.00 16 6 C 0.27 3.98 15.32 -22.47 -0.34 3.64 16 7 N -0.44 -7.15 18.54 41.84 0.78 -6.37 16 8 C -0.10 -1.48 9.68 -39.59 -0.38 -1.86 16 9 C -0.08 -1.29 7.68 -39.61 -0.30 -1.59 16 10 C 0.04 0.82 5.18 -104.71 -0.54 0.27 16 11 C -0.04 -0.93 6.18 -80.24 -0.50 -1.42 16 12 N -0.39 -9.22 9.88 -7.87 -0.08 -9.30 16 13 C -0.12 -2.74 11.17 -17.23 -0.19 -2.93 16 14 C 0.10 2.16 11.17 -17.38 -0.19 1.97 16 15 N -0.46 -11.81 8.12 -9.55 -0.08 -11.89 16 16 C 0.23 5.68 6.67 -82.64 -0.55 5.13 16 17 C -0.39 -9.26 7.90 -37.92 -0.30 -9.56 16 18 H 0.10 2.13 5.83 -52.49 -0.31 1.82 16 19 C 0.06 1.45 5.50 -17.31 -0.10 1.35 16 20 N -0.70 -16.73 11.54 55.56 0.64 -16.09 16 21 Si 0.91 16.55 29.56 -169.99 -5.03 11.53 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 24 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.13 1.59 6.30 -52.48 -0.33 1.26 16 29 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.15 2.49 7.40 -52.49 -0.39 2.10 16 31 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 LS Contribution 301.34 15.07 4.54 4.54 Total: -1.00 -28.71 301.34 -5.67 -34.38 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.65 Total: 3.98 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -3.62 Total: -5.43 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 1.26 Total: -43.64 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.18 Total: -5.36 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.53 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.71 -5.67 -34.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241388043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.173 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds