Wall clock time and date at job start Tue Mar 31 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35753 * 116.99545 * 2 1 4 4 C 1.38296 * 120.14094 * 359.97438 * 3 2 1 5 5 C 1.39622 * 119.81725 * 180.02562 * 4 3 2 6 6 C 1.43199 * 119.96070 * 180.02562 * 5 4 3 7 7 N 5.83924 * 81.31711 * 359.97438 * 2 1 3 8 8 C 1.39915 * 120.07846 * 359.97438 * 5 4 3 9 9 C 1.36480 * 120.27228 * 359.75706 * 8 5 4 10 10 C 1.39854 * 120.18874 * 0.52254 * 9 8 5 11 11 C 1.47509 * 120.04665 * 179.73456 * 10 9 8 12 12 N 1.33089 * 120.55215 * 129.77435 * 11 10 9 13 13 C 1.31855 * 120.02988 * 180.28009 * 12 11 10 14 14 C 1.39087 * 121.22471 * 359.69595 * 13 12 11 15 15 N 1.31489 * 121.14828 * 0.02922 * 14 13 12 16 16 C 1.34108 * 119.86111 * 359.97096 * 15 14 13 17 17 C 1.40698 * 120.58368 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00179 * 171.81011 * 17 16 15 19 19 C 1.40200 * 119.99615 * 351.80290 * 17 16 15 20 20 N 1.30672 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99689 * 180.27863 * 19 17 16 22 22 H 1.48495 * 109.46899 * 179.72819 * 21 19 17 23 23 H 1.48503 * 109.46830 * 299.72457 * 21 19 17 24 24 H 1.48495 * 109.47372 * 59.72253 * 21 19 17 25 25 H 1.09000 * 109.47373 * 60.00250 * 1 2 3 26 26 H 1.09005 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47451 * 300.00288 * 1 2 3 28 28 H 1.08008 * 120.08654 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.86412 * 180.02562 * 8 5 4 30 30 H 1.07999 * 119.90648 * 180.27563 * 9 8 5 31 31 H 1.07999 * 119.38482 * 179.67726 * 13 12 11 32 32 H 1.08001 * 119.42635 * 180.02562 * 14 13 12 33 33 H 0.96999 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.2947 2.3713 -0.0005 5 6 1.9355 3.6117 -0.0011 6 6 1.1615 4.8165 -0.0011 7 7 0.5474 5.7723 -0.0026 8 6 3.3330 3.6791 -0.0005 9 6 4.0770 2.5349 0.0055 10 6 3.4469 1.2863 0.0002 11 6 4.2541 0.0517 0.0009 12 7 4.0069 -0.9177 0.8786 13 6 4.7384 -2.0147 0.8736 14 6 5.7710 -2.1886 -0.0419 15 7 6.0526 -1.2638 -0.9332 16 6 5.3370 -0.1302 -0.9682 17 6 5.6249 0.8691 -1.9158 18 1 4.9644 1.7166 -2.0245 19 6 6.7694 0.7648 -2.7189 20 7 7.5684 -0.2608 -2.5875 21 14 7.1558 2.0955 -3.9716 22 1 8.4142 1.7553 -4.6829 23 1 6.0438 2.1910 -4.9512 24 1 7.3165 3.3980 -3.2767 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2159 2.3189 -0.0005 29 1 3.8251 4.6405 -0.0005 30 1 5.1554 2.5938 0.0104 31 1 4.5322 -2.7925 1.5939 32 1 6.3516 -3.0990 -0.0203 33 1 8.3600 -0.3332 -3.1434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241388043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:55 Heat of formation + Delta-G solvation = 41.969838 kcal Electronic energy + Delta-G solvation = -20761.468507 eV Core-core repulsion = 17558.982639 eV Total energy + Delta-G solvation = -3202.485868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29013 -40.18395 -38.69088 -37.25611 -35.94330 -34.25061 -33.13618 -31.25805 -30.69758 -28.13772 -27.98794 -25.72373 -23.85560 -22.90061 -22.72644 -20.33472 -19.46759 -17.91564 -17.76297 -17.45221 -16.86698 -16.64086 -16.37639 -15.89277 -15.22707 -15.01996 -14.91944 -14.71610 -14.58486 -14.27254 -13.76078 -13.60647 -13.30660 -13.26640 -12.98692 -12.94725 -12.43465 -12.40692 -12.03602 -11.94916 -11.82695 -11.59595 -11.41408 -10.97358 -10.04024 -9.54463 -9.29076 -8.91167 -8.36218 -6.58765 -0.34267 0.53665 0.67951 1.23066 1.44546 1.56727 1.60530 1.60878 2.00763 2.19825 2.51333 2.79901 2.85366 2.94774 3.72857 3.78174 3.95550 4.18143 4.21484 4.25474 4.43323 4.46563 4.52446 4.65850 4.73401 4.78896 4.85267 4.94875 5.11225 5.20342 5.29489 5.35182 5.57945 5.80559 5.88540 6.15748 6.43218 6.49072 6.61009 6.76200 7.42955 7.97314 8.27626 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.007192 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.557764 B = 3892.410081 C = 5473.795120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.123 3.877 4 C -0.151 4.151 5 C -0.011 4.011 6 C 0.290 3.710 7 N -0.459 5.459 8 C -0.090 4.090 9 C -0.075 4.075 10 C -0.001 4.001 11 C -0.038 4.038 12 N -0.411 5.411 13 C -0.133 4.133 14 C 0.080 3.920 15 N -0.498 5.498 16 C 0.193 3.807 17 C -0.411 4.411 18 H 0.111 0.889 19 C 0.024 3.976 20 N -0.739 5.739 21 Si 0.982 3.018 22 H -0.270 1.270 23 H -0.258 1.258 24 H -0.244 1.244 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.138 0.862 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 4.127 0.945 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.172 4.172 5 C -0.015 4.015 6 C -0.025 4.025 7 N -0.135 5.135 8 C -0.111 4.111 9 C -0.094 4.094 10 C -0.004 4.004 11 C -0.187 4.187 12 N -0.123 5.123 13 C -0.293 4.293 14 C -0.089 4.089 15 N -0.215 5.215 16 C 0.068 3.932 17 C -0.441 4.441 18 H 0.128 0.872 19 C -0.201 4.201 20 N -0.359 5.359 21 Si 0.801 3.199 22 H -0.194 1.194 23 H -0.182 1.182 24 H -0.168 1.168 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.177 0.823 29 H 0.178 0.822 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.108 5.223 0.881 8.864 hybrid contribution 0.457 -0.599 -0.365 0.838 sum -6.650 4.624 0.515 8.116 Atomic orbital electron populations 1.23351 0.77073 1.05162 1.02342 1.86242 1.22763 1.26320 1.88187 1.18979 0.91101 0.84828 0.97450 1.21165 1.00880 0.89550 1.05567 1.15667 0.91724 0.86222 1.07906 1.25568 0.92308 0.92327 0.92261 1.81240 1.09917 1.11555 1.10761 1.20846 0.91035 0.99474 0.99720 1.20840 1.00975 0.89730 0.97877 1.18107 0.89524 0.92346 1.00426 1.21420 1.01753 0.95714 0.99852 1.67841 1.23706 1.00232 1.20481 1.22831 1.01201 0.98874 1.06388 1.23831 0.95031 0.98373 0.91685 1.69506 1.27917 1.01769 1.22312 1.20824 0.88496 0.91759 0.92168 1.20075 1.06240 1.05081 1.12656 0.87156 1.27156 0.95042 0.98609 0.99255 1.70114 1.08725 1.26277 1.30782 0.85230 0.78660 0.78434 0.77577 1.19441 1.18200 1.16764 0.91428 0.87371 0.91217 0.82332 0.82236 0.84379 0.83082 0.83049 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.32 -11.40 9.51 -90.78 -0.86 -12.26 16 3 C 0.12 4.27 6.67 22.81 0.15 4.43 16 4 C -0.15 -4.02 8.73 22.62 0.20 -3.82 16 5 C -0.01 -0.29 5.74 -21.29 -0.12 -0.41 16 6 C 0.29 7.47 15.32 88.33 1.35 8.82 16 7 N -0.46 -13.29 18.54 19.00 0.35 -12.94 16 8 C -0.09 -2.37 9.68 22.27 0.22 -2.15 16 9 C -0.08 -2.51 7.68 22.25 0.17 -2.34 16 10 C 0.00 -0.05 5.18 -19.92 -0.10 -0.15 16 11 C -0.04 -1.84 6.18 43.54 0.27 -1.57 16 12 N -0.41 -19.82 9.88 -178.80 -1.77 -21.59 16 13 C -0.13 -6.04 11.17 84.89 0.95 -5.09 16 14 C 0.08 3.73 11.17 84.95 0.95 4.68 16 15 N -0.50 -26.56 8.12 -184.12 -1.50 -28.06 16 16 C 0.19 10.03 6.67 41.54 0.28 10.30 16 17 C -0.41 -19.72 7.90 23.35 0.18 -19.54 16 18 H 0.11 4.80 5.83 -2.91 -0.02 4.79 16 19 C 0.02 1.11 5.50 85.34 0.47 1.58 16 20 N -0.74 -36.36 11.54 21.87 0.25 -36.11 16 21 Si 0.98 33.47 29.56 68.60 2.03 35.50 16 22 H -0.27 -8.91 7.11 99.48 0.71 -8.21 16 23 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 24 H -0.24 -7.72 7.11 99.48 0.71 -7.01 16 25 H 0.07 1.26 7.66 -2.39 -0.02 1.24 16 26 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 28 H 0.16 3.26 6.30 -2.91 -0.02 3.24 16 29 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.14 4.75 7.40 -2.91 -0.02 4.73 16 31 H 0.15 5.79 8.06 -2.91 -0.02 5.77 16 32 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 33 H 0.29 12.72 8.29 -92.71 -0.77 11.95 16 Total: -1.00 -63.95 301.34 5.75 -58.20 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 1.17 Total: 21.07 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.07 Total: -3.81 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -2.66 Total: -98.70 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.86 Total: -12.26 kcal Atomic # 14 Polarization: 33.47 SS G_CDS: 2.03 Total: 35.50 kcal Total: -63.95 5.75 -58.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241388043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.168 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds