Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35703 * 117.00423 * 2 1 4 4 C 1.38688 * 120.08624 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.35431 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.52642 * 359.72256 * 5 4 3 7 7 C 1.39078 * 120.15706 * 0.55740 * 6 5 4 8 8 C 1.48144 * 120.17136 * 179.72143 * 7 6 5 9 9 C 1.40079 * 119.99243 * 130.50144 * 8 7 6 10 10 N 1.32176 * 120.29010 * 179.97438 * 9 8 7 11 11 C 1.31883 * 120.28749 * 359.69768 * 10 9 8 12 12 C 1.40851 * 119.97484 * 0.59816 * 11 10 9 13 13 C 1.41333 * 120.14664 * 179.68236 * 12 11 10 14 14 H 1.08003 * 119.99512 * 5.13352 * 13 12 11 15 15 C 1.40049 * 120.00356 * 185.13264 * 13 12 11 16 16 N 1.30729 * 119.99812 * 184.82657 * 15 13 12 17 17 Si 1.86803 * 119.99822 * 4.83313 * 15 13 12 18 18 H 1.48498 * 109.47088 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46982 * 299.99905 * 17 15 13 20 20 H 1.48501 * 109.47025 * 60.00058 * 17 15 13 21 21 N 1.32586 * 119.98844 * 310.51680 * 8 7 6 22 22 C 1.40033 * 120.08922 * 180.02562 * 3 2 1 23 23 C 1.43195 * 120.25863 * 0.02562 * 22 3 2 24 24 N 3.53242 * 165.89564 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47379 * 59.99963 * 1 2 3 26 26 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46998 * 299.99655 * 1 2 3 28 28 H 1.08005 * 119.82447 * 0.04968 * 4 3 2 29 29 H 1.07998 * 119.73906 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.91611 * 180.27706 * 6 5 4 31 31 H 1.08002 * 119.85135 * 0.02562 * 9 8 7 32 32 H 1.07997 * 120.01239 * 180.28295 * 11 10 9 33 33 H 0.96998 * 120.00517 * 354.98181 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2916 2.3734 -0.0005 5 6 1.9135 3.6079 -0.0011 6 6 3.2928 3.6992 0.0047 7 6 4.0694 2.5456 -0.0006 8 6 5.5477 2.6432 -0.0007 9 6 6.2986 1.8990 0.9184 10 7 7.6178 1.9813 0.9232 11 6 8.2388 2.7601 0.0588 12 6 7.4950 3.5182 -0.8663 13 6 8.1565 4.3591 -1.7897 14 1 9.2352 4.3593 -1.8432 15 6 7.4133 5.1922 -2.6354 16 7 8.0187 5.8993 -3.5532 17 14 5.5571 5.2929 -2.4516 18 1 5.0106 6.2380 -3.4582 19 1 4.9651 3.9474 -2.6625 20 1 5.2201 5.7737 -1.0876 21 7 6.1595 3.4351 -0.8704 22 6 3.4434 1.2844 -0.0005 23 6 4.2305 0.0882 -0.0017 24 7 4.8549 -0.8608 -0.0004 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2131 2.3153 -0.0001 29 1 1.3170 4.5082 -0.0011 30 1 3.7683 4.6689 0.0087 31 1 5.7974 1.2547 1.6255 32 1 9.3171 2.8204 0.0637 33 1 8.9874 5.9037 -3.6018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242297714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = 45.906309 kcal Electronic energy + Delta-G solvation = -20798.489767 eV Core-core repulsion = 17596.174597 eV Total energy + Delta-G solvation = -3202.315170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49284 -39.45884 -37.56706 -36.02167 -34.35337 -33.11995 -31.98288 -30.89681 -29.25719 -27.57032 -26.03653 -24.35021 -23.45371 -21.96830 -20.98171 -18.97834 -18.63783 -17.64269 -16.54132 -16.06633 -15.89650 -15.85516 -15.25957 -14.84091 -14.17329 -13.83019 -13.56718 -13.37399 -13.23534 -12.89844 -12.70284 -12.35913 -12.32482 -12.22187 -11.87228 -11.40521 -11.34768 -11.23950 -11.14672 -11.01922 -9.99757 -9.90020 -9.52503 -9.23783 -9.03138 -8.38433 -8.05337 -7.84552 -7.33838 -5.07176 0.73632 1.21701 2.13215 2.44337 2.98649 3.07447 3.17902 3.40196 3.50693 3.82895 3.97173 4.11331 4.22532 4.42546 4.56573 4.71530 4.93116 4.93940 5.08148 5.16516 5.25918 5.32973 5.42138 5.55136 5.65477 5.85160 5.99231 6.06632 6.31866 6.42570 6.45933 6.62266 6.68349 7.12598 7.13338 7.18684 7.72956 7.88039 7.88858 8.27167 8.66359 9.13907 9.73524 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.006493 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.413271 B = 4311.585040 C = 5280.233147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.171 3.829 4 C -0.213 4.213 5 C -0.051 4.051 6 C -0.135 4.135 7 C 0.068 3.932 8 C 0.150 3.850 9 C -0.091 4.091 10 N -0.416 5.416 11 C -0.030 4.030 12 C 0.198 3.802 13 C -0.446 4.446 14 H 0.091 0.909 15 C 0.042 3.958 16 N -0.787 5.787 17 Si 1.139 2.861 18 H -0.324 1.324 19 H -0.269 1.269 20 H -0.287 1.287 21 N -0.527 5.527 22 C -0.049 4.049 23 C 0.267 3.733 24 N -0.414 5.414 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.956 -2.163 4.984 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.122 3.878 4 C -0.232 4.232 5 C -0.070 4.070 6 C -0.153 4.153 7 C 0.064 3.936 8 C 0.006 3.994 9 C -0.247 4.247 10 N -0.126 5.126 11 C -0.203 4.203 12 C 0.074 3.926 13 C -0.479 4.479 14 H 0.109 0.891 15 C -0.182 4.182 16 N -0.407 5.407 17 Si 0.972 3.028 18 H -0.257 1.257 19 H -0.196 1.196 20 H -0.215 1.215 21 N -0.249 5.249 22 C -0.054 4.054 23 C -0.048 4.048 24 N -0.090 5.090 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.108 -3.173 4.301 16.972 hybrid contribution 1.265 -0.155 0.577 1.399 sum -14.843 -3.328 4.878 15.975 Atomic orbital electron populations 1.23136 0.77821 1.04216 1.01708 1.86083 1.21819 1.26469 1.87991 1.18681 0.89900 0.84880 0.94313 1.21144 1.00141 0.91609 1.10296 1.21088 0.94236 0.97265 0.94362 1.21318 0.93284 0.98569 1.02175 1.18396 0.91591 0.90632 0.93003 1.20125 0.91416 0.94417 0.93399 1.22419 0.90252 1.07285 1.04757 1.67736 1.09623 1.14774 1.20516 1.23263 0.99814 1.00349 0.96844 1.19427 0.87925 0.92630 0.92666 1.20843 0.96279 1.16722 1.14045 0.89112 1.27883 1.10978 0.89994 0.89342 1.70628 1.13843 1.30997 1.25228 0.82203 0.70049 0.76049 0.74527 1.25668 1.19588 1.21459 1.67568 1.10074 1.23217 1.24051 1.15219 0.88167 0.87741 1.14240 1.25069 0.93190 0.92570 0.93997 1.81140 1.07991 1.11170 1.08723 0.92182 0.88128 0.92209 0.84461 0.84573 0.84082 0.84980 0.83974 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.90 9.92 -18.81 -0.19 -4.08 16 3 C 0.17 2.32 6.69 -38.74 -0.26 2.06 16 4 C -0.21 -2.27 9.02 -39.42 -0.36 -2.62 16 5 C -0.05 -0.58 10.02 -39.59 -0.40 -0.97 16 6 C -0.13 -2.09 9.27 -39.27 -0.36 -2.46 16 7 C 0.07 1.25 5.64 -104.55 -0.59 0.66 16 8 C 0.15 3.34 5.94 -82.78 -0.49 2.85 16 9 C -0.09 -2.06 9.62 -16.71 -0.16 -2.22 16 10 N -0.42 -9.98 10.47 -12.04 -0.13 -10.10 16 11 C -0.03 -0.72 10.98 -16.54 -0.18 -0.90 16 12 C 0.20 5.01 6.39 -84.84 -0.54 4.47 16 13 C -0.45 -11.43 9.59 -37.73 -0.36 -11.80 16 14 H 0.09 2.27 8.05 -52.48 -0.42 1.85 16 15 C 0.04 1.06 5.52 -17.34 -0.10 0.97 16 16 N -0.79 -20.16 13.65 55.55 0.76 -19.40 16 17 Si 1.14 26.21 24.66 -169.99 -4.19 22.02 16 18 H -0.32 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.27 -6.28 6.60 56.52 0.37 -5.91 16 20 H -0.29 -6.26 6.27 56.52 0.35 -5.91 16 21 N -0.53 -12.91 4.59 -7.52 -0.03 -12.95 16 22 C -0.05 -0.83 5.75 -106.33 -0.61 -1.44 16 23 C 0.27 5.15 12.12 -22.48 -0.27 4.88 16 24 N -0.41 -8.65 18.54 41.84 0.78 -7.87 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.14 0.96 6.28 -52.48 -0.33 0.63 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.14 2.28 6.60 -52.49 -0.35 1.93 16 31 H 0.13 2.78 7.21 -52.49 -0.38 2.40 16 32 H 0.14 3.08 8.06 -52.49 -0.42 2.66 16 33 H 0.29 6.99 8.72 -40.82 -0.36 6.63 16 LS Contribution 294.59 15.07 4.44 4.44 Total: -1.00 -30.29 294.59 -5.02 -35.32 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -2.77 Total: -2.02 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.69 Total: -5.34 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 1.37 Total: -50.32 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.19 Total: -4.08 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.19 Total: 22.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.29 -5.02 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242297714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.222 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds