Wall clock time and date at job start Tue Mar 31 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35492 * 117.00100 * 2 1 4 4 C 1.39103 * 120.48353 * 359.97438 * 3 2 1 5 5 C 1.38321 * 118.63759 * 179.70413 * 4 3 2 6 6 C 1.40092 * 119.57055 * 0.27792 * 5 4 3 7 7 C 1.48095 * 119.52440 * 180.02562 * 6 5 4 8 8 C 1.39676 * 120.98208 * 311.18848 * 7 6 5 9 9 C 1.38022 * 119.16080 * 179.79728 * 8 7 6 10 10 N 1.32026 * 121.23542 * 0.48904 * 9 8 7 11 11 C 1.31646 * 122.18846 * 359.74028 * 10 9 8 12 12 C 1.39530 * 120.67278 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.64311 * 180.02562 * 12 11 10 14 14 N 6.13324 * 136.15109 * 37.84300 * 2 1 3 15 15 N 1.32252 * 120.95879 * 359.97410 * 6 5 4 16 16 C 1.33486 * 121.46093 * 0.02575 * 15 6 5 17 17 C 1.41036 * 119.82801 * 180.02562 * 16 15 6 18 18 H 1.08001 * 120.00009 * 185.21339 * 17 16 15 19 19 C 1.40037 * 119.99813 * 5.21612 * 17 16 15 20 20 N 1.30758 * 120.00373 * 5.39136 * 19 17 16 21 21 Si 1.86801 * 119.99691 * 185.39502 * 19 17 16 22 22 H 1.48495 * 109.47488 * 89.99700 * 21 19 17 23 23 H 1.48507 * 109.46986 * 209.99965 * 21 19 17 24 24 H 1.48504 * 109.47213 * 329.99646 * 21 19 17 25 25 H 1.08999 * 109.46850 * 60.00487 * 1 2 3 26 26 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47178 * 300.00194 * 1 2 3 28 28 H 1.08005 * 120.68206 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.21440 * 180.25134 * 5 4 3 30 30 H 1.08001 * 120.41379 * 0.02562 * 8 7 6 31 31 H 1.07999 * 119.37957 * 180.21150 * 9 8 7 32 32 H 1.07999 * 119.66353 * 179.97438 * 11 10 9 33 33 H 0.97002 * 120.00117 * 175.00601 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 1.2965 2.3802 -0.0005 5 6 1.9638 3.5918 0.0058 6 6 3.3646 3.6095 0.0065 7 6 4.0781 4.9072 0.0139 8 6 3.7338 5.9220 -0.8821 9 6 4.4209 7.1183 -0.8395 10 7 5.4002 7.3150 0.0239 11 6 5.7696 6.3927 0.8875 12 6 5.1299 5.1532 0.9223 13 6 5.5319 4.1504 1.8623 14 7 5.8521 3.3553 2.6067 15 7 4.0592 2.4841 0.0019 16 6 3.4562 1.2932 -0.0043 17 6 4.2308 0.1146 -0.0085 18 1 3.7492 -0.8478 -0.0985 19 6 5.6245 0.1924 0.1039 20 7 6.1998 1.3469 0.3185 21 14 6.6618 -1.3532 -0.0529 22 1 7.0365 -1.5558 -1.4755 23 1 7.8915 -1.2093 0.7673 24 1 5.8822 -2.5232 0.4251 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2170 2.3457 -0.0014 29 1 1.4085 4.5181 0.0096 30 1 2.9376 5.7737 -1.5965 31 1 4.1554 7.9066 -1.5283 32 1 6.5766 6.5971 1.5754 33 1 7.1571 1.3913 0.4685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244335127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:10 Heat of formation + Delta-G solvation = 64.774164 kcal Electronic energy + Delta-G solvation = -20908.257441 eV Core-core repulsion = 17706.760443 eV Total energy + Delta-G solvation = -3201.496998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98040 -38.91682 -36.86001 -35.59152 -33.96193 -32.47061 -31.20660 -30.51127 -29.26873 -26.73488 -25.90846 -23.99058 -23.47865 -21.57678 -20.67918 -18.38708 -17.66919 -16.86568 -16.64235 -16.07166 -15.46418 -14.86414 -14.82261 -14.09068 -13.98667 -13.90884 -13.20045 -12.92414 -12.71649 -12.59877 -12.34482 -12.27467 -11.97947 -11.62341 -11.36782 -11.33858 -11.21853 -10.76932 -10.57373 -10.53433 -9.98893 -9.57030 -9.35541 -9.23227 -8.77686 -8.31426 -7.92139 -7.25965 -6.54255 -4.49754 1.00808 1.35671 2.58620 2.75901 3.08399 3.11278 3.13023 3.59684 3.67190 3.92309 4.27564 4.37494 4.52364 4.62301 4.75894 4.90632 5.08111 5.44435 5.59180 5.60149 5.67470 5.72214 5.80508 5.91785 5.95207 6.07547 6.12076 6.40344 6.58716 6.70951 6.79809 7.08730 7.20425 7.34144 7.66452 8.06085 8.08589 8.17334 8.46157 8.59405 8.85176 9.79531 10.20288 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.007580 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.751320 B = 3693.253819 C = 5214.978171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.018 4.018 4 C -0.149 4.149 5 C -0.262 4.262 6 C 0.126 3.874 7 C 0.087 3.913 8 C -0.164 4.164 9 C 0.110 3.890 10 N -0.495 5.495 11 C 0.138 3.862 12 C -0.045 4.045 13 C 0.261 3.739 14 N -0.389 5.389 15 N -0.444 5.444 16 C 0.251 3.749 17 C -0.405 4.405 18 H 0.092 0.908 19 C 0.067 3.933 20 N -0.701 5.701 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.261 1.261 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 6.419 -2.232 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C -0.067 4.067 4 C -0.173 4.173 5 C -0.287 4.287 6 C -0.015 4.015 7 C 0.076 3.924 8 C -0.185 4.185 9 C -0.046 4.046 10 N -0.204 5.204 11 C -0.022 4.022 12 C -0.051 4.051 13 C -0.056 4.056 14 N -0.064 5.064 15 N -0.159 5.159 16 C 0.124 3.876 17 C -0.436 4.436 18 H 0.110 0.890 19 C -0.160 4.160 20 N -0.322 5.322 21 Si 0.734 3.266 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.185 1.185 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.380 5.899 -1.107 6.457 hybrid contribution -1.474 -1.085 -0.457 1.887 sum -3.854 4.813 -1.564 6.361 Atomic orbital electron populations 1.22786 0.81445 1.02083 1.00035 1.85943 1.18535 1.27754 1.89784 1.20392 0.93682 0.83346 1.09265 1.20846 0.97907 0.92448 1.06075 1.20826 0.93269 0.96510 1.18059 1.19441 0.89703 0.91569 1.00826 1.19185 0.90196 0.92666 0.90385 1.22168 1.02465 0.93680 1.00172 1.22720 0.90834 0.95777 0.95227 1.67615 1.14857 1.32804 1.05106 1.22734 0.96955 0.87253 0.95274 1.17112 0.98824 0.92543 0.96619 1.24717 0.94592 0.93012 0.93263 1.81004 1.07138 1.06308 1.11907 1.68920 1.34550 0.95147 1.17238 1.18069 0.85034 0.91840 0.92661 1.19563 0.90832 0.93075 1.40130 0.88961 1.26044 0.98641 0.97299 0.94018 1.70026 1.11495 1.24925 1.25710 0.86279 0.79278 0.81951 0.79093 1.19344 1.20135 1.18496 0.94029 0.89723 0.94067 0.87496 0.88100 0.84065 0.82487 0.82229 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.83 101.05 0.99 1.52 16 2 O -0.31 -6.81 9.62 -18.17 -0.17 -6.98 16 3 C -0.02 -0.42 6.74 -38.03 -0.26 -0.68 16 4 C -0.15 -3.17 9.11 -39.23 -0.36 -3.53 16 5 C -0.26 -5.49 9.56 -38.86 -0.37 -5.86 16 6 C 0.13 2.86 5.92 -82.95 -0.49 2.37 16 7 C 0.09 1.65 5.65 -104.22 -0.59 1.06 16 8 C -0.16 -2.45 9.58 -39.12 -0.37 -2.82 16 9 C 0.11 1.44 11.16 -17.55 -0.20 1.24 16 10 N -0.50 -7.23 10.33 -12.98 -0.13 -7.36 16 11 C 0.14 2.10 10.92 -17.15 -0.19 1.91 16 12 C -0.04 -0.83 5.77 -106.39 -0.61 -1.45 16 13 C 0.26 5.61 13.74 -22.50 -0.31 5.30 16 14 N -0.39 -9.17 18.36 41.81 0.77 -8.40 16 15 N -0.44 -11.54 6.74 -7.59 -0.05 -11.59 16 16 C 0.25 6.72 6.55 -84.86 -0.56 6.17 16 17 C -0.40 -10.82 8.93 -37.85 -0.34 -11.16 16 18 H 0.09 2.40 7.33 -52.49 -0.38 2.02 16 19 C 0.07 1.69 5.48 -17.33 -0.10 1.60 16 20 N -0.70 -18.33 11.34 55.55 0.63 -17.70 16 21 Si 0.91 19.08 29.57 -169.99 -5.03 14.06 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 28 H 0.11 1.93 6.43 -52.48 -0.34 1.60 16 29 H 0.10 1.81 8.03 -52.48 -0.42 1.39 16 30 H 0.14 1.83 8.05 -52.49 -0.42 1.41 16 31 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -30.74 303.98 -5.92 -36.66 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -2.77 Total: 1.05 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.74 Total: -4.32 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 1.21 Total: -45.05 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.17 Total: -6.98 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.74 -5.92 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244335127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.436 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds