Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46927 * 2 1 4 4 H 1.08994 * 109.46922 * 304.82593 * 3 2 1 5 5 C 1.50696 * 109.47010 * 184.82249 * 3 2 1 6 6 H 1.07990 * 120.00280 * 239.99926 * 5 3 2 7 7 C 1.37880 * 119.99724 * 60.00831 * 5 3 2 8 8 N 1.31519 * 120.00077 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47362 * 89.99436 * 9 7 5 11 11 H 1.48504 * 109.46984 * 209.99264 * 9 7 5 12 12 H 1.48498 * 109.47228 * 329.99074 * 9 7 5 13 13 N 1.46903 * 109.46759 * 64.82527 * 3 2 1 14 14 C 1.46899 * 111.00016 * 252.51986 * 13 3 2 15 15 H 1.08997 * 110.83517 * 38.03811 * 14 13 3 16 16 C 1.54712 * 110.93939 * 274.32423 * 14 13 3 17 17 O 1.43764 * 102.79313 * 267.20796 * 16 14 13 18 18 C 1.36131 * 109.29192 * 332.44782 * 17 16 14 19 19 C 1.39266 * 129.86509 * 198.54034 * 18 17 16 20 20 C 1.38044 * 120.23028 * 180.43215 * 19 18 17 21 21 Cl 1.73604 * 119.83409 * 179.97438 * 20 19 18 22 22 C 1.38400 * 120.32495 * 0.02562 * 20 19 18 23 23 C 1.38329 * 119.75498 * 359.79701 * 22 20 19 24 24 C 1.37676 * 120.01630 * 359.97438 * 23 22 20 25 25 H 1.08997 * 109.47560 * 55.35849 * 1 2 3 26 26 H 1.09003 * 109.47189 * 175.35673 * 1 2 3 27 27 H 1.09001 * 109.47198 * 295.35745 * 1 2 3 28 28 H 1.08998 * 109.46986 * 240.00389 * 2 1 3 29 29 H 1.08991 * 109.47419 * 120.00242 * 2 1 3 30 30 H 0.96999 * 119.99357 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00101 * 16.47480 * 13 3 2 32 32 H 1.08996 * 110.74911 * 25.53727 * 16 14 13 33 33 H 1.09007 * 110.74543 * 148.70715 * 16 14 13 34 34 H 1.08005 * 119.88426 * 0.45807 * 19 18 17 35 35 H 1.07999 * 120.12275 * 179.77882 * 22 20 19 36 36 H 1.07997 * 120.00235 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6077 1.9807 -0.8436 5 6 3.5422 1.4443 -0.1194 6 1 4.1452 1.8896 0.6579 7 6 4.1467 0.8774 -1.2214 8 7 3.4123 0.3347 -2.1679 9 14 6.0088 0.8801 -1.3698 10 1 6.5570 -0.3507 -0.7454 11 1 6.3909 0.9198 -2.8043 12 1 6.5588 2.0734 -0.6779 13 7 1.6476 2.1006 1.2535 14 6 0.5754 3.0777 1.0220 15 1 -0.1319 2.7084 0.2795 16 6 1.1573 4.4471 0.5983 17 8 1.2778 5.1430 1.8505 18 6 0.3472 4.6655 2.7218 19 6 -0.1521 5.2303 3.8927 20 6 -1.1000 4.5592 4.6389 21 17 -1.7149 5.2726 6.0972 22 6 -1.5617 3.3201 4.2305 23 6 -1.0729 2.7547 3.0665 24 6 -0.1310 3.4244 2.3184 25 1 -0.3634 0.5841 -0.8454 26 1 -0.3634 -1.0243 -0.0832 27 1 -0.3634 0.4401 0.9287 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8378 -0.0644 -2.9429 31 1 1.3744 1.4217 1.9481 32 1 2.1336 4.3235 0.1297 33 1 0.4722 4.9673 -0.0712 34 1 0.2032 6.1970 4.2180 35 1 -2.3008 2.7963 4.8187 36 1 -1.4307 1.7881 2.7440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -13.714443 kcal Electronic energy + Delta-G solvation = -19822.378969 eV Core-core repulsion = 16718.585943 eV Total energy + Delta-G solvation = -3103.793026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99368 -37.74603 -36.40683 -36.22771 -33.01121 -31.54496 -30.38256 -29.65366 -28.03161 -26.25019 -23.33636 -22.84634 -22.08709 -20.79313 -19.80856 -17.36606 -16.73649 -16.35509 -16.11575 -15.72265 -14.75127 -14.44684 -14.09481 -13.81234 -13.68750 -13.23571 -13.16801 -12.84481 -12.63083 -11.87986 -11.79870 -11.59296 -11.44420 -11.31439 -11.21746 -10.94679 -10.83651 -10.62902 -10.49587 -10.11232 -9.88934 -9.82495 -9.18708 -8.85902 -8.39636 -8.10447 -7.38578 -6.03955 -4.07563 1.09382 1.32882 1.95624 3.30028 3.36930 3.41697 3.50044 3.65003 4.39982 4.58095 4.80811 4.85273 5.05560 5.17064 5.23107 5.26732 5.56592 5.72098 5.76246 5.90737 6.01350 6.02236 6.12450 6.15095 6.23198 6.27277 6.44971 6.48582 6.68965 6.82807 7.05711 7.21163 7.27303 7.66297 7.83603 8.16810 8.38018 8.49081 9.01178 9.58167 11.01767 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.004190 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.023809 B = 6681.378415 C = 7188.942259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.028 0.972 5 C -0.493 4.493 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.101 3.899 15 H 0.066 0.934 16 C 0.059 3.941 17 O -0.293 6.293 18 C 0.141 3.859 19 C -0.144 4.144 20 C 0.000 4.000 21 Cl -0.071 7.071 22 C -0.147 4.147 23 C -0.053 4.053 24 C -0.164 4.164 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.102 0.898 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 6.050 9.341 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.046 0.954 5 C -0.532 4.532 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.297 5.297 14 C -0.009 4.009 15 H 0.083 0.917 16 C -0.016 4.016 17 O -0.205 6.205 18 C 0.093 3.907 19 C -0.163 4.163 20 C -0.026 4.026 21 Cl -0.042 7.042 22 C -0.166 4.166 23 C -0.072 4.072 24 C -0.166 4.166 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.245 6.669 9.251 15.331 hybrid contribution 0.130 -0.808 -0.288 0.867 sum -10.115 5.861 8.964 14.732 Atomic orbital electron populations 1.21900 0.99511 0.99788 0.99468 1.22197 0.91432 1.01630 1.03306 1.19328 0.95684 0.89014 0.85063 0.95407 1.21226 0.90936 1.36114 1.04944 0.91758 1.24956 0.98257 0.95498 0.95775 1.69862 1.34862 1.39222 1.09752 0.86523 0.85602 0.78469 0.76974 1.20823 1.21420 1.19845 1.60971 1.35394 1.19916 1.13398 1.21697 0.92034 0.95288 0.91881 0.91665 1.24058 1.04391 0.89921 0.83277 1.86836 1.49939 1.60671 1.23086 1.19362 0.88413 0.91545 0.91361 1.19894 0.99619 1.01692 0.95131 1.20334 0.98011 0.94726 0.89566 1.98359 1.86563 1.83782 1.35541 1.20816 1.03173 0.94717 0.97928 1.20229 0.94756 0.99269 0.92971 1.21129 0.99910 0.95513 1.00038 0.93754 0.94364 0.94973 0.87963 0.94346 0.93020 0.85088 0.85717 0.90950 0.84678 0.84752 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.90 37.16 0.33 -2.33 16 2 C -0.15 -3.20 5.06 -26.73 -0.14 -3.34 16 3 C 0.22 4.97 2.03 -68.86 -0.14 4.83 16 4 H 0.03 0.69 7.48 -51.93 -0.39 0.31 16 5 C -0.49 -12.97 8.84 -34.44 -0.30 -13.28 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -24.45 11.29 55.43 0.63 -23.82 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -13.20 5.90 -100.72 -0.59 -13.80 16 14 C 0.10 1.72 2.62 -67.50 -0.18 1.55 16 15 H 0.07 1.10 7.10 -51.93 -0.37 0.73 16 16 C 0.06 0.98 7.67 38.06 0.29 1.27 16 17 O -0.29 -5.07 11.10 -20.16 -0.22 -5.30 16 18 C 0.14 2.23 7.04 -38.92 -0.27 1.95 16 19 C -0.14 -1.99 9.84 -39.27 -0.39 -2.37 16 20 C 0.00 0.01 6.31 -39.59 -0.25 -0.24 16 21 Cl -0.07 -0.78 28.94 -51.86 -1.50 -2.28 16 22 C -0.15 -1.75 9.84 -39.49 -0.39 -2.14 16 23 C -0.05 -0.69 10.03 -39.75 -0.40 -1.09 16 24 C -0.16 -2.52 5.70 -104.08 -0.59 -3.11 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.51 7.13 -51.93 -0.37 0.14 16 28 H 0.10 2.56 5.96 -51.93 -0.31 2.26 16 29 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.33 6.31 7.45 -39.29 -0.29 6.02 16 32 H 0.12 2.29 8.06 -51.93 -0.42 1.88 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -26.90 313.22 -9.16 -36.06 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.65 Total: 5.41 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.52 Total: -16.94 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.03 Total: -37.62 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.22 Total: -5.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.90 -9.16 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.346 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds