Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46927 * 2 1 4 4 H 1.08994 * 109.46922 * 304.82593 * 3 2 1 5 5 C 1.50696 * 109.47010 * 184.82249 * 3 2 1 6 6 H 1.07990 * 120.00280 * 239.99926 * 5 3 2 7 7 C 1.37880 * 119.99724 * 60.00831 * 5 3 2 8 8 N 1.31519 * 120.00077 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47362 * 89.99436 * 9 7 5 11 11 H 1.48504 * 109.46984 * 209.99264 * 9 7 5 12 12 H 1.48498 * 109.47228 * 329.99074 * 9 7 5 13 13 N 1.46903 * 109.46759 * 64.82527 * 3 2 1 14 14 C 1.46899 * 111.00016 * 252.51986 * 13 3 2 15 15 H 1.08997 * 110.83517 * 38.03811 * 14 13 3 16 16 C 1.54712 * 110.93939 * 274.32423 * 14 13 3 17 17 O 1.43764 * 102.79313 * 267.20796 * 16 14 13 18 18 C 1.36131 * 109.29192 * 332.44782 * 17 16 14 19 19 C 1.39266 * 129.86509 * 198.54034 * 18 17 16 20 20 C 1.38044 * 120.23028 * 180.43215 * 19 18 17 21 21 Cl 1.73604 * 119.83409 * 179.97438 * 20 19 18 22 22 C 1.38400 * 120.32495 * 0.02562 * 20 19 18 23 23 C 1.38329 * 119.75498 * 359.79701 * 22 20 19 24 24 C 1.37676 * 120.01630 * 359.97438 * 23 22 20 25 25 H 1.08997 * 109.47560 * 55.35849 * 1 2 3 26 26 H 1.09003 * 109.47189 * 175.35673 * 1 2 3 27 27 H 1.09001 * 109.47198 * 295.35745 * 1 2 3 28 28 H 1.08998 * 109.46986 * 240.00389 * 2 1 3 29 29 H 1.08991 * 109.47419 * 120.00242 * 2 1 3 30 30 H 0.96999 * 119.99357 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00101 * 16.47480 * 13 3 2 32 32 H 1.08996 * 110.74911 * 25.53727 * 16 14 13 33 33 H 1.09007 * 110.74543 * 148.70715 * 16 14 13 34 34 H 1.08005 * 119.88426 * 0.45807 * 19 18 17 35 35 H 1.07999 * 120.12275 * 179.77882 * 22 20 19 36 36 H 1.07997 * 120.00235 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6077 1.9807 -0.8436 5 6 3.5422 1.4443 -0.1194 6 1 4.1452 1.8896 0.6579 7 6 4.1467 0.8774 -1.2214 8 7 3.4123 0.3347 -2.1679 9 14 6.0088 0.8801 -1.3698 10 1 6.5570 -0.3507 -0.7454 11 1 6.3909 0.9198 -2.8043 12 1 6.5588 2.0734 -0.6779 13 7 1.6476 2.1006 1.2535 14 6 0.5754 3.0777 1.0220 15 1 -0.1319 2.7084 0.2795 16 6 1.1573 4.4471 0.5983 17 8 1.2778 5.1430 1.8505 18 6 0.3472 4.6655 2.7218 19 6 -0.1521 5.2303 3.8927 20 6 -1.1000 4.5592 4.6389 21 17 -1.7149 5.2726 6.0972 22 6 -1.5617 3.3201 4.2305 23 6 -1.0729 2.7547 3.0665 24 6 -0.1310 3.4244 2.3184 25 1 -0.3634 0.5841 -0.8454 26 1 -0.3634 -1.0243 -0.0832 27 1 -0.3634 0.4401 0.9287 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8378 -0.0644 -2.9429 31 1 1.3744 1.4217 1.9481 32 1 2.1336 4.3235 0.1297 33 1 0.4722 4.9673 -0.0712 34 1 0.2032 6.1970 4.2180 35 1 -2.3008 2.7963 4.8187 36 1 -1.4307 1.7881 2.7440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -28.842677 kcal Electronic energy + Delta-G solvation = -19823.034979 eV Core-core repulsion = 16718.585943 eV Total energy + Delta-G solvation = -3104.449035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.19073 -38.82430 -38.03751 -37.20299 -34.71955 -33.19303 -31.56722 -30.86317 -29.43511 -28.03424 -24.86656 -24.18558 -23.23018 -22.07705 -21.54592 -18.63163 -18.29344 -17.73634 -17.51696 -16.88608 -16.58592 -15.80289 -15.40379 -15.22676 -14.96089 -14.70525 -14.27360 -14.13723 -14.11008 -13.32591 -13.27965 -13.06229 -12.75534 -12.73262 -12.68145 -12.49313 -12.30940 -11.96133 -11.91730 -11.63821 -11.62744 -11.49260 -11.05322 -10.41353 -9.91583 -9.24438 -8.98160 -8.06393 -6.16616 0.02974 0.28073 0.98579 1.42015 1.44283 1.53955 2.36228 2.44286 2.54314 3.19997 3.38818 3.47933 3.74995 3.90985 4.06451 4.14594 4.37880 4.43859 4.51201 4.53639 4.61144 4.68644 4.73477 4.85635 5.03961 5.07670 5.17736 5.19736 5.34597 5.39352 5.44594 5.53757 5.75241 5.87378 6.08537 6.34037 6.63021 6.78410 6.96222 7.52630 8.96587 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.004190 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.023809 B = 6681.378415 C = 7188.942259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.226 3.774 4 H 0.005 0.995 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.103 3.897 15 H 0.069 0.931 16 C 0.059 3.941 17 O -0.312 6.312 18 C 0.115 3.885 19 C -0.147 4.147 20 C -0.001 4.001 21 Cl -0.054 7.054 22 C -0.136 4.136 23 C -0.051 4.051 24 C -0.175 4.175 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.260 0.740 31 H 0.335 0.665 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 5.910 10.870 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.118 3.882 4 H 0.023 0.977 5 C -0.550 4.550 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.007 4.007 15 H 0.087 0.913 16 C -0.017 4.017 17 O -0.226 6.226 18 C 0.068 3.932 19 C -0.166 4.166 20 C -0.028 4.028 21 Cl -0.025 7.025 22 C -0.154 4.154 23 C -0.069 4.069 24 C -0.177 4.177 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.821 6.535 10.798 17.293 hybrid contribution 0.555 -0.708 -0.650 1.110 sum -11.266 5.827 10.148 16.244 Atomic orbital electron populations 1.21754 0.96141 1.01071 1.00506 1.22006 0.94447 1.00150 1.01397 1.19027 0.93802 0.89711 0.85639 0.97722 1.21505 0.92945 1.35917 1.04596 0.93444 1.25575 1.01789 0.95367 0.95638 1.69975 1.36060 1.39704 1.10001 0.85678 0.81432 0.78274 0.76925 1.20427 1.20986 1.20007 1.60785 1.37493 1.20030 1.12011 1.21637 0.91417 0.94321 0.93300 0.91302 1.24004 1.03508 0.90447 0.83717 1.86783 1.51187 1.61087 1.23513 1.19600 0.89102 0.92362 0.92131 1.20072 0.99762 1.02210 0.94556 1.20480 0.97417 0.94961 0.89903 1.98371 1.86188 1.83595 1.34348 1.21164 1.02728 0.94196 0.97330 1.20503 0.93762 0.99864 0.92799 1.21045 1.01122 0.95824 0.99695 0.94161 0.92694 0.92667 0.91289 0.94724 0.93089 0.84596 0.88400 0.88513 0.83844 0.81797 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 8.90 71.98 0.64 -4.04 16 2 C -0.14 -6.17 5.06 30.60 0.15 -6.02 16 3 C 0.23 10.60 2.03 44.17 0.09 10.69 16 4 H 0.00 0.25 7.48 -2.39 -0.02 0.23 16 5 C -0.51 -27.57 8.84 25.60 0.23 -27.35 16 6 H 0.05 2.66 7.81 -2.92 -0.02 2.64 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -50.93 11.29 21.45 0.24 -50.69 16 9 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 N -0.67 -26.77 5.90 -472.58 -2.79 -29.56 16 14 C 0.10 3.48 2.62 45.06 0.12 3.59 16 15 H 0.07 2.26 7.10 -2.39 -0.02 2.24 16 16 C 0.06 1.99 7.67 72.57 0.56 2.54 16 17 O -0.31 -10.95 11.10 -95.04 -1.05 -12.01 16 18 C 0.11 3.54 7.04 22.70 0.16 3.70 16 19 C -0.15 -3.82 9.84 22.47 0.22 -3.59 16 20 C 0.00 -0.01 6.31 22.26 0.14 0.13 16 21 Cl -0.05 -1.03 28.94 -2.72 -0.08 -1.11 16 22 C -0.14 -2.73 9.84 22.33 0.22 -2.51 16 23 C -0.05 -1.16 10.03 22.16 0.22 -0.94 16 24 C -0.18 -5.12 5.70 -19.51 -0.11 -5.23 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.61 7.13 -2.39 -0.02 1.59 16 28 H 0.07 3.52 5.96 -2.39 -0.01 3.50 16 29 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 30 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.34 12.57 7.45 -89.69 -0.67 11.90 16 32 H 0.10 3.80 8.06 -2.39 -0.02 3.79 16 33 H 0.10 2.72 8.14 -2.38 -0.02 2.71 16 34 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -58.47 313.22 1.86 -56.61 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.43 Total: 18.90 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.09 Total: -27.79 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -2.54 Total: -80.24 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.05 Total: -12.01 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -58.47 1.86 -56.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.766 kcal (2) G-P(sol) polarization free energy of solvation -58.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds