Wall clock time and date at job start Tue Mar 31 2020 05:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47066 * 2 1 4 4 C 1.50696 * 109.47416 * 239.99561 * 2 1 3 5 5 H 1.07997 * 120.00608 * 240.00631 * 4 2 1 6 6 C 1.37881 * 119.99764 * 59.99985 * 4 2 1 7 7 N 1.31518 * 120.00135 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47703 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46895 * 120.00779 * 8 6 4 11 11 H 1.48502 * 109.47327 * 239.99969 * 8 6 4 12 12 N 1.46503 * 109.46575 * 119.99934 * 2 1 3 13 13 C 1.46494 * 120.00109 * 60.00242 * 12 2 1 14 14 C 1.34781 * 119.99424 * 239.99754 * 12 2 1 15 15 O 1.21614 * 120.00447 * 5.66273 * 14 12 2 16 16 C 1.47170 * 119.99629 * 185.66475 * 14 12 2 17 17 S 1.77343 * 128.47788 * 7.18433 * 16 14 12 18 18 N 1.56634 * 95.28298 * 180.02562 * 17 16 14 19 19 N 1.27334 * 109.74197 * 0.02562 * 18 17 16 20 20 C 1.31243 * 120.04054 * 359.68905 * 19 18 17 21 21 C 1.50695 * 124.06072 * 180.36943 * 20 19 18 22 22 C 1.53005 * 117.49751 * 8.93225 * 21 20 19 23 23 C 1.52997 * 117.49844 * 300.27723 * 21 20 19 24 24 H 1.09000 * 109.47306 * 300.00615 * 1 2 3 25 25 H 1.09008 * 109.47080 * 60.00202 * 1 2 3 26 26 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 27 27 H 0.96999 * 119.99561 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47104 * 95.45358 * 13 12 2 29 29 H 1.09005 * 109.46634 * 215.45126 * 13 12 2 30 30 H 1.08992 * 109.47466 * 335.44575 * 13 12 2 31 31 H 1.09000 * 115.55116 * 154.60079 * 21 20 19 32 32 H 1.09004 * 117.49788 * 0.02562 * 22 21 20 33 33 H 1.09001 * 117.50088 * 145.01665 * 22 21 20 34 34 H 1.09003 * 117.50009 * 214.97980 * 23 21 20 35 35 H 1.08996 * 117.49968 * 359.97058 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6036 10 1 1.1661 -1.5868 -4.8160 11 1 3.1467 -0.1877 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0024 1.1545 1.9458 16 6 3.3859 -0.7605 3.2187 17 16 3.3765 -2.5044 3.5404 18 7 4.1843 -2.4085 4.8790 19 7 4.4692 -1.1917 5.1232 20 6 4.0902 -0.2488 4.2927 21 6 4.3845 1.2162 4.4879 22 6 5.3470 1.5995 5.6139 23 6 3.8493 1.8811 5.7577 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7096 1.1616 -3.4845 28 1 2.4630 -2.7355 1.0573 29 1 1.5287 -2.2618 2.4964 30 1 0.7378 -2.3256 0.9032 31 1 4.4099 1.8160 3.5781 32 1 5.7676 0.7919 6.2131 33 1 6.0054 2.4516 5.4450 34 1 3.5229 2.9185 5.6834 35 1 3.2840 1.2591 6.4516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262822549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:12 Heat of formation + Delta-G solvation = 69.406370 kcal Electronic energy + Delta-G solvation = -19892.343661 eV Core-core repulsion = 16826.491482 eV Total energy + Delta-G solvation = -3065.852180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87953 -39.12244 -36.91906 -35.56394 -33.13922 -31.68996 -29.60126 -27.34529 -26.37472 -25.32185 -23.89741 -22.34796 -22.20027 -20.60898 -18.75945 -18.07853 -16.92494 -16.18129 -16.12294 -15.74138 -15.41756 -14.64490 -14.46231 -14.28439 -13.45397 -13.02193 -12.78686 -12.74972 -12.12302 -12.00727 -11.81797 -11.65651 -11.51781 -11.16917 -11.07673 -10.94560 -10.82362 -10.40300 -10.35046 -10.28789 -9.87990 -9.56986 -9.42624 -9.30250 -9.24422 -8.54558 -7.85310 -6.18367 -4.27369 -0.08415 0.94691 1.64854 2.03673 3.19898 3.28244 3.30336 3.43920 3.56071 3.85582 4.06582 4.30685 4.51063 4.82316 4.96800 5.06074 5.13725 5.18734 5.31492 5.65438 5.70587 5.73420 5.89976 6.02768 6.14931 6.28665 6.62651 6.68023 6.89596 7.18849 7.31381 7.58238 7.78808 7.86965 8.01748 8.25405 8.59160 8.79456 9.39728 10.86985 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.005106 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.294422 B = 5482.245588 C = 6004.238413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.260 3.740 3 H 0.068 0.932 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.578 5.578 13 C 0.072 3.928 14 C 0.586 3.414 15 O -0.524 6.524 16 C -0.266 4.266 17 S 0.425 5.575 18 N -0.290 5.290 19 N -0.251 5.251 20 C 0.114 3.886 21 C -0.083 4.083 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.014 0.986 25 H 0.097 0.903 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -4.068 11.733 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.086 0.914 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.309 5.309 13 C -0.074 4.074 14 C 0.370 3.630 15 O -0.403 6.403 16 C -0.407 4.407 17 S 0.562 5.438 18 N -0.270 5.270 19 N -0.117 5.117 20 C -0.033 4.033 21 C -0.104 4.104 22 C -0.201 4.201 23 C -0.196 4.196 24 H 0.033 0.967 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.165 0.835 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.728 -5.181 12.254 13.582 hybrid contribution 0.218 0.663 -1.279 1.457 sum 2.946 -4.518 10.975 12.229 Atomic orbital electron populations 1.22120 0.97760 0.99603 1.01232 1.19104 0.91242 0.94565 0.79023 0.91392 1.21319 1.32273 1.13258 0.90048 0.92039 1.24884 0.94792 0.94927 0.99010 1.69882 1.36084 1.22446 1.23894 0.86413 0.78652 0.79599 0.82585 1.19749 1.20839 1.20837 1.48204 1.47838 1.11660 1.23205 1.21848 1.03126 0.83485 0.98968 1.16520 0.79746 0.86268 0.80453 1.90749 1.61388 1.13745 1.74373 1.28069 1.10414 0.98299 1.03915 1.82964 1.39001 1.05363 1.16432 1.78598 1.16693 1.15000 1.16660 1.70556 1.19991 0.93810 1.27365 1.21843 0.95291 0.96916 0.89207 1.20652 1.06395 0.87069 0.96311 1.23042 0.92669 1.03490 1.00850 1.22986 0.96963 1.01538 0.98070 0.96672 0.88480 0.94918 0.92561 0.92069 0.93283 0.88488 0.83511 0.87780 0.88091 0.87798 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.96 37.16 0.33 -2.99 16 2 C 0.26 6.23 2.62 -69.08 -0.18 6.04 16 3 H 0.07 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.53 -13.50 8.37 -34.44 -0.29 -13.79 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.26 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.58 -11.65 2.75 -176.64 -0.49 -12.14 16 13 C 0.07 1.11 8.15 59.84 0.49 1.60 16 14 C 0.59 11.83 7.65 -12.63 -0.10 11.73 16 15 O -0.52 -12.03 14.30 5.27 0.08 -11.96 16 16 C -0.27 -4.50 6.44 -35.95 -0.23 -4.73 16 17 S 0.42 5.73 19.08 -107.50 -2.05 3.68 16 18 N -0.29 -4.44 12.51 60.35 0.75 -3.68 16 19 N -0.25 -4.04 10.95 33.42 0.37 -3.67 16 20 C 0.11 1.85 6.59 -82.84 -0.55 1.30 16 21 C -0.08 -1.21 5.69 -91.77 -0.52 -1.74 16 22 C -0.16 -1.91 10.11 -26.69 -0.27 -2.18 16 23 C -0.16 -1.90 10.24 -26.70 -0.27 -2.17 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.10 2.40 6.07 -51.92 -0.32 2.09 16 26 H 0.03 0.66 6.67 -51.93 -0.35 0.31 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 29 H 0.05 0.64 5.20 -31.80 -0.17 0.47 16 30 H 0.10 1.47 6.44 -51.93 -0.33 1.14 16 31 H 0.15 2.38 6.55 -51.93 -0.34 2.04 16 32 H 0.10 1.24 7.80 -51.93 -0.41 0.84 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -29.02 303.76 -6.73 -35.75 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.89 Total: 0.85 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.68 Total: -5.28 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 1.26 Total: -42.74 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -2.05 Total: 3.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.02 -6.73 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.156 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds