Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 119.99880 * 2 1 4 4 C 1.50698 * 109.47026 * 270.00132 * 3 2 1 5 5 H 1.08005 * 120.00149 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00138 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99893 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99867 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47468 * 90.00010 * 8 6 4 10 10 H 1.48503 * 109.47006 * 209.99576 * 8 6 4 11 11 H 1.48497 * 109.47184 * 329.99464 * 8 6 4 12 12 C 1.34777 * 119.99758 * 179.97438 * 2 1 3 13 13 O 1.21363 * 119.99737 * 174.33940 * 12 2 1 14 14 C 1.49342 * 120.00243 * 354.33732 * 12 2 1 15 15 O 1.21384 * 120.00165 * 359.71015 * 14 12 2 16 16 N 1.34781 * 120.00267 * 179.71001 * 14 12 2 17 17 C 1.39836 * 120.00259 * 185.23063 * 16 14 12 18 18 C 1.39387 * 120.46011 * 325.22184 * 17 16 14 19 19 C 1.38401 * 118.38388 * 179.97438 * 18 17 16 20 20 C 1.38592 * 119.22177 * 359.97438 * 19 18 17 21 21 F 1.35094 * 119.57266 * 179.97438 * 20 19 18 22 22 N 1.32021 * 120.85880 * 359.97438 * 20 19 18 23 23 C 1.31877 * 121.76999 * 0.04495 * 22 20 19 24 24 H 1.09007 * 109.47105 * 264.13125 * 1 2 3 25 25 H 1.08997 * 109.47094 * 24.12912 * 1 2 3 26 26 H 1.08996 * 109.47155 * 144.13725 * 1 2 3 27 27 H 1.09000 * 109.47253 * 30.00063 * 3 2 1 28 28 H 1.09001 * 109.47420 * 150.00410 * 3 2 1 29 29 H 0.96995 * 119.99635 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99449 * 5.22841 * 16 14 12 31 31 H 1.07996 * 120.80914 * 359.95328 * 18 17 16 32 32 H 1.08000 * 120.38977 * 179.72674 * 19 18 17 33 33 H 1.08001 * 119.65499 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4387 3.4163 -3.4340 9 1 2.3091 4.2595 -3.9012 10 1 4.6993 4.1988 -3.4964 11 1 3.5558 2.2190 -4.3046 12 6 2.1389 -1.1672 0.0005 13 8 3.3481 -1.1698 -0.1031 14 6 1.3977 -2.4574 0.1287 15 8 0.1887 -2.4545 0.2377 16 7 2.0710 -3.6249 0.1234 17 6 1.3714 -4.8356 0.1330 18 6 0.1709 -4.9524 0.8317 19 6 -0.4860 -6.1704 0.8119 20 6 0.0664 -7.2257 0.1033 21 9 -0.5686 -8.4179 0.0796 22 7 1.2051 -7.0810 -0.5489 23 6 1.8617 -5.9373 -0.5543 24 1 -0.3634 -0.1051 1.0223 25 1 -0.3633 0.9378 -0.4201 26 1 -0.3633 -0.8328 -0.6020 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.0310 4.4434 -0.8505 30 1 3.0409 -3.6253 0.1127 31 1 -0.2365 -4.1131 1.3756 32 1 -1.4162 -6.2983 1.3457 33 1 2.7907 -5.8571 -1.0991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322755232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -53.751791 kcal Electronic energy + Delta-G solvation = -21075.682416 eV Core-core repulsion = 17438.276522 eV Total energy + Delta-G solvation = -3637.405894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.20438 -41.24516 -39.85699 -38.10159 -35.91727 -34.65898 -32.70475 -32.65867 -30.08485 -28.15261 -26.38389 -24.90907 -24.43102 -23.39033 -21.76362 -19.91246 -18.35158 -18.04728 -17.57756 -16.93909 -16.70356 -16.27077 -15.95855 -15.61557 -15.15785 -14.86428 -14.46489 -14.20619 -14.02484 -13.44616 -13.32296 -13.30123 -13.04511 -12.50829 -12.22212 -12.12778 -11.41352 -11.13981 -11.05574 -10.90216 -10.65398 -10.27788 -10.21395 -10.01186 -9.76311 -8.98141 -8.59549 -8.54700 -7.92633 -6.16316 -4.21942 0.47149 0.79474 1.66937 2.40097 3.23469 3.24771 3.31471 3.32684 3.35850 3.54828 3.80614 4.22727 4.35446 4.46429 4.51418 4.62370 4.93568 5.17883 5.18844 5.59972 5.63743 5.80882 5.88891 6.00873 6.28963 6.41309 6.66140 6.91003 7.16237 7.24889 7.28094 7.62397 7.79251 8.03913 8.06335 8.47733 8.82072 9.43487 10.91967 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.037058 B = 0.003394 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.385723 B = 8246.868604 C = 8493.223349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.560 5.560 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.494 3.506 13 O -0.519 6.519 14 C 0.511 3.489 15 O -0.502 6.502 16 N -0.646 5.646 17 C 0.091 3.909 18 C -0.052 4.052 19 C -0.171 4.171 20 C 0.285 3.715 21 F -0.114 7.114 22 N -0.494 5.494 23 C 0.117 3.883 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.265 0.735 30 H 0.428 0.572 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 -16.259 4.042 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.291 5.291 3 C 0.124 3.876 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.274 3.726 13 O -0.396 6.396 14 C 0.295 3.705 15 O -0.375 6.375 16 N -0.294 5.294 17 C -0.006 4.006 18 C -0.080 4.080 19 C -0.193 4.193 20 C 0.131 3.869 21 F -0.094 7.094 22 N -0.208 5.208 23 C -0.042 4.042 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.267 0.733 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.660 -16.707 3.649 18.353 hybrid contribution 0.137 0.828 -0.566 1.013 sum -6.524 -15.879 3.083 17.442 Atomic orbital electron populations 1.22062 0.79411 1.03456 1.01636 1.48151 1.07662 1.06732 1.66584 1.19545 0.92617 0.77200 0.98205 1.21364 1.37109 1.06656 0.91873 0.92201 1.24932 0.95093 0.96216 0.97716 1.69921 1.38051 1.14314 1.30875 0.86440 0.77764 0.78664 0.84252 1.20519 1.20985 1.19800 1.19410 0.87545 0.84195 0.81424 1.90767 1.13241 1.86334 1.49246 1.21134 0.87720 0.85671 0.75952 1.90676 1.13998 1.87044 1.45823 1.43176 1.11707 1.02765 1.71757 1.18840 0.95566 0.87406 0.98805 1.21745 0.93418 0.97578 0.95254 1.21792 1.02904 0.92153 1.02414 1.18142 0.89930 0.81929 0.96942 1.91617 1.79346 1.43736 1.94655 1.66979 1.07568 1.26431 1.19843 1.22398 0.99929 0.86045 0.95869 0.93026 0.90904 0.90051 0.94023 0.93459 0.92508 0.73302 0.81903 0.83010 0.80990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 9.27 59.85 0.55 1.84 16 2 N -0.56 -11.46 2.86 -183.51 -0.52 -11.99 16 3 C 0.24 6.00 5.09 -5.20 -0.03 5.98 16 4 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.49 9.53 7.72 -11.64 -0.09 9.44 16 13 O -0.52 -11.37 16.12 5.49 0.09 -11.28 16 14 C 0.51 7.74 7.62 -11.63 -0.09 7.65 16 15 O -0.50 -7.65 10.72 5.47 0.06 -7.59 16 16 N -0.65 -7.71 5.33 -10.19 -0.05 -7.76 16 17 C 0.09 1.00 6.33 -83.57 -0.53 0.47 16 18 C -0.05 -0.55 8.81 -39.09 -0.34 -0.90 16 19 C -0.17 -1.62 10.08 -39.39 -0.40 -2.02 16 20 C 0.28 3.19 8.41 -17.34 -0.15 3.05 16 21 F -0.11 -1.30 17.29 2.25 0.04 -1.26 16 22 N -0.49 -5.89 10.36 -13.43 -0.14 -6.03 16 23 C 0.12 1.20 11.12 -17.32 -0.19 1.01 16 24 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 25 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 26 H 0.08 1.30 5.84 -51.93 -0.30 0.99 16 27 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 28 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.43 4.48 8.30 -40.82 -0.34 4.14 16 31 H 0.16 1.76 6.29 -52.49 -0.33 1.43 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -31.09 300.52 -4.98 -36.07 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.01 Total: 0.55 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.68 Total: 13.38 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.02 Total: -50.53 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.15 Total: -18.87 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.09 -4.98 -36.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322755232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.681 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds