Wall clock time and date at job start Tue Mar 31 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46509 * 120.00095 * 2 1 4 4 C 1.38615 * 120.00356 * 179.97438 * 2 1 3 5 5 N 1.29293 * 124.95963 * 0.05563 * 4 2 1 6 6 C 1.32963 * 117.69349 * 180.02562 * 5 4 2 7 7 C 1.34330 * 113.07912 * 359.88726 * 6 5 4 8 8 S 1.70900 * 124.96933 * 180.02562 * 4 2 1 9 9 C 1.51201 * 124.97653 * 180.26446 * 7 6 5 10 10 N 1.47301 * 107.47437 * 349.65422 * 9 7 6 11 11 C 1.34775 * 121.09866 * 223.34305 * 10 9 7 12 12 O 1.21692 * 119.99775 * 180.02562 * 11 10 9 13 13 C 1.46369 * 120.00353 * 359.97438 * 11 10 9 14 14 H 1.08003 * 119.99955 * 359.97438 * 13 11 10 15 15 C 1.40052 * 120.00121 * 180.02562 * 13 11 10 16 16 N 1.30671 * 120.00031 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99805 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47176 * 89.99791 * 17 15 13 19 19 H 1.48501 * 109.46997 * 209.99475 * 17 15 13 20 20 H 1.48497 * 109.47245 * 329.99351 * 17 15 13 21 21 C 1.47077 * 117.79631 * 43.31807 * 10 9 7 22 22 C 1.52117 * 123.90123 * 179.82226 * 6 5 4 23 23 H 1.08997 * 109.47206 * 270.00485 * 1 2 3 24 24 H 1.08998 * 109.46932 * 30.00102 * 1 2 3 25 25 H 1.08999 * 109.46918 * 150.00135 * 1 2 3 26 26 H 1.09004 * 109.46701 * 269.99542 * 3 2 1 27 27 H 1.08997 * 109.46829 * 29.99865 * 3 2 1 28 28 H 1.09003 * 109.46950 * 149.99956 * 3 2 1 29 29 H 1.08996 * 109.85595 * 109.14702 * 9 7 6 30 30 H 1.09001 * 109.85434 * 230.16431 * 9 7 6 31 31 H 0.96992 * 119.99853 * 180.02562 * 16 15 13 32 32 H 1.09005 * 109.53717 * 55.26927 * 21 10 9 33 33 H 1.08998 * 109.53936 * 175.43029 * 21 10 9 34 34 H 1.08993 * 109.52843 * 41.14424 * 22 6 5 35 35 H 1.09000 * 109.51943 * 280.94325 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1581 -1.2004 0.0005 5 7 1.6110 -2.3718 0.0000 6 6 2.4162 -3.4300 0.0012 7 6 3.7185 -3.1007 0.0003 8 16 3.8607 -1.3483 0.0012 9 6 4.8625 -4.0893 -0.0044 10 7 4.2938 -5.4251 0.2445 11 6 4.8869 -6.2869 1.0942 12 8 4.3999 -7.3857 1.2847 13 6 6.1173 -5.9016 1.7870 14 1 6.5502 -4.9269 1.6170 15 6 6.7339 -6.7974 2.6695 16 7 6.2105 -7.9770 2.8748 17 14 8.3039 -6.3054 3.5542 18 1 7.9619 -5.6559 4.8451 19 1 9.1269 -7.5145 3.8112 20 1 9.0709 -5.3548 2.7097 21 6 3.0569 -5.7869 -0.4643 22 6 1.9252 -4.8697 0.0047 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 2.3793 1.5834 -1.0277 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5139 29 1 5.3610 -4.0739 -0.9736 30 1 5.5731 -3.8369 0.7826 31 1 6.6373 -8.5972 3.4863 32 1 3.2032 -5.6658 -1.5377 33 1 2.8017 -6.8238 -0.2460 34 1 1.0746 -4.9663 -0.6699 35 1 1.6243 -5.1494 1.0143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528789856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:11 Heat of formation + Delta-G solvation = 2.958888 kcal Electronic energy + Delta-G solvation = -19643.371945 eV Core-core repulsion = 16574.638387 eV Total energy + Delta-G solvation = -3068.733559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11874 -39.60876 -37.87823 -36.16794 -34.63983 -32.64994 -31.13117 -29.21855 -28.61171 -27.35192 -25.12369 -24.93122 -22.71346 -21.38704 -19.70906 -19.25158 -18.24589 -17.66569 -16.89798 -16.71747 -16.34332 -16.10132 -15.71745 -15.44028 -15.10073 -14.69215 -14.42589 -13.80875 -13.72659 -13.58274 -13.47707 -13.37474 -13.09214 -13.06165 -12.92044 -12.71586 -12.47071 -12.32996 -11.97593 -11.74682 -10.92866 -10.64651 -10.53658 -10.02093 -9.82366 -9.21499 -8.45079 -8.29055 -6.85050 0.02861 0.16930 0.76280 1.40871 1.42214 1.57519 1.88292 1.91959 2.24196 2.45736 2.76452 3.42256 3.59518 3.93683 4.13323 4.16547 4.31260 4.34173 4.39066 4.46076 4.61610 4.68420 4.72916 4.78357 4.80317 4.87376 4.93867 5.05130 5.22461 5.37014 5.67409 5.81983 5.99803 6.07347 6.34903 6.87320 6.97693 7.37013 8.44304 8.66535 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025269 B = 0.004761 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.827330 B = 5879.247771 C = 6634.103129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.593 5.593 3 C 0.087 3.913 4 C 0.302 3.698 5 N -0.575 5.575 6 C 0.105 3.895 7 C -0.300 4.300 8 S 0.148 5.852 9 C 0.212 3.788 10 N -0.642 5.642 11 C 0.545 3.455 12 O -0.627 6.627 13 C -0.568 4.568 14 H 0.093 0.907 15 C 0.030 3.970 16 N -0.820 5.820 17 Si 0.994 3.006 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.245 1.245 21 C 0.121 3.879 22 C -0.043 4.043 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.275 0.725 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 21.204 -6.542 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.314 5.314 3 C -0.055 4.055 4 C -0.068 4.068 5 N -0.302 5.302 6 C -0.025 4.025 7 C -0.423 4.423 8 S 0.399 5.601 9 C 0.087 3.913 10 N -0.379 5.379 11 C 0.352 3.648 12 O -0.514 6.514 13 C -0.604 4.604 14 H 0.111 0.889 15 C -0.185 4.185 16 N -0.450 5.450 17 Si 0.813 3.187 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.168 1.168 21 C -0.003 4.003 22 C -0.084 4.084 23 H 0.069 0.931 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.672 21.322 -6.371 22.965 hybrid contribution -0.049 -1.202 0.527 1.313 sum -5.721 20.121 -5.844 21.719 Atomic orbital electron populations 1.21726 0.76866 1.03669 1.01881 1.46098 1.06498 1.00611 1.78173 1.22072 0.97107 0.82877 1.03445 1.23566 0.93988 0.90375 0.98909 1.65896 1.38967 0.96891 1.28413 1.20371 0.87972 0.94590 0.99561 1.25981 0.99425 0.97412 1.19531 1.83114 1.02485 1.00037 1.74498 1.19814 0.91041 0.78927 1.01546 1.48153 1.26902 1.15383 1.47485 1.18611 0.85219 0.82893 0.78120 1.90546 1.68403 1.24449 1.67972 1.21481 1.08811 1.03151 1.26963 0.88944 1.26977 1.01912 0.93647 0.95960 1.70185 1.38534 1.07215 1.29034 0.85073 0.76151 0.78847 0.78625 1.18816 1.19714 1.16790 1.21235 0.84501 0.98567 0.95982 1.20613 0.98647 0.87056 1.02098 0.93055 0.87964 0.92363 0.90796 0.87399 0.91497 0.90408 0.89130 0.91552 0.90740 0.91196 0.87716 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.56 127.77 1.35 3.04 16 2 N -0.59 -12.02 3.38 -761.37 -2.57 -14.60 16 3 C 0.09 1.00 10.41 127.77 1.33 2.33 16 4 C 0.30 8.60 7.74 179.43 1.39 9.99 16 5 N -0.58 -19.80 9.78 -187.49 -1.83 -21.63 16 6 C 0.10 3.90 6.79 41.95 0.28 4.18 16 7 C -0.30 -10.78 6.47 24.95 0.16 -10.62 16 8 S 0.15 4.02 21.67 -56.49 -1.22 2.80 16 9 C 0.21 8.37 6.60 85.64 0.57 8.94 16 10 N -0.64 -30.86 2.95 -826.71 -2.44 -33.30 16 11 C 0.54 32.42 7.65 86.36 0.66 33.08 16 12 O -0.63 -42.68 14.47 -4.32 -0.06 -42.75 16 13 C -0.57 -32.38 8.84 24.83 0.22 -32.16 16 14 H 0.09 4.70 5.83 -2.91 -0.02 4.68 16 15 C 0.03 1.70 5.50 85.31 0.47 2.17 16 16 N -0.82 -50.57 11.83 21.84 0.26 -50.31 16 17 Si 0.99 40.91 29.56 68.60 2.03 42.94 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.24 -9.24 7.11 99.48 0.71 -8.53 16 21 C 0.12 5.04 6.34 86.28 0.55 5.59 16 22 C -0.04 -1.61 6.46 30.32 0.20 -1.42 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 25 H 0.06 1.21 7.62 -2.39 -0.02 1.19 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.11 0.66 8.07 -2.39 -0.02 0.65 16 28 H 0.07 0.83 7.04 -2.39 -0.02 0.81 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.09 3.68 5.66 -2.39 -0.01 3.67 16 31 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 32 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 33 H 0.07 3.23 7.03 -2.39 -0.02 3.21 16 34 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -80.27 304.80 2.44 -77.83 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.11 Total: 13.90 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 7.17 Total: 25.12 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.59 Total: -119.84 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.06 Total: -42.75 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.22 Total: 2.80 kcal Total: -80.27 2.44 -77.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528789856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.791 kcal (2) G-P(sol) polarization free energy of solvation -80.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds