Wall clock time and date at job start Tue Mar 31 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27941 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47543 * 240.00454 * 3 2 1 5 5 H 1.48498 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47233 * 120.00688 * 3 2 1 7 7 C 1.50700 * 120.00097 * 180.02562 * 2 1 3 8 8 C 1.53123 * 109.52223 * 334.99419 * 7 2 1 9 9 C 1.53042 * 109.27711 * 177.55908 * 8 7 2 10 10 N 1.46845 * 109.51462 * 300.82372 * 9 8 7 11 11 C 1.46896 * 111.00039 * 185.83504 * 10 9 8 12 12 C 1.50702 * 109.47229 * 164.72918 * 11 10 9 13 13 C 1.32843 * 123.05776 * 103.68195 * 12 11 10 14 14 S 1.75687 * 110.05657 * 179.97438 * 13 12 11 15 15 C 1.70626 * 91.80315 * 359.97438 * 14 13 12 16 16 C 1.35985 * 110.34153 * 359.77243 * 15 14 13 17 Xx 1.56995 * 123.04590 * 180.25034 * 16 15 14 18 17 O 1.41996 * 120.00166 * 185.01189 * 17 16 15 19 18 O 1.42007 * 119.99697 * 5.01558 * 17 16 15 20 19 C 1.46834 * 111.20978 * 61.75038 * 10 9 8 21 20 C 1.53036 * 109.51811 * 298.24962 * 20 10 9 22 21 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 23 22 H 1.08994 * 109.57393 * 214.83298 * 7 2 1 24 23 H 1.08995 * 109.50054 * 57.61838 * 8 7 2 25 24 H 1.08996 * 109.53233 * 297.52054 * 8 7 2 26 25 H 1.08997 * 109.46016 * 60.83706 * 9 8 7 27 26 H 1.08996 * 109.45618 * 180.81518 * 9 8 7 28 27 H 1.09001 * 109.47216 * 284.72707 * 11 10 9 29 28 H 1.08997 * 109.47084 * 44.72991 * 11 10 9 30 29 H 1.07997 * 124.96767 * 359.96592 * 13 12 11 31 30 H 1.08000 * 124.83322 * 179.97438 * 15 14 13 32 31 H 0.96708 * 113.99896 * 179.97438 * 18 17 16 33 32 H 0.96698 * 113.99511 * 179.97438 * 19 17 16 34 33 H 1.08993 * 109.46679 * 178.23441 * 20 10 9 35 34 H 1.09003 * 109.45628 * 58.25300 * 20 10 9 36 35 H 1.09004 * 109.50006 * 299.23987 * 21 20 10 37 36 H 1.08995 * 109.54063 * 179.13945 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 3.0671 1.6965 -1.2125 5 1 1.2485 2.7465 0.0006 6 1 3.0673 1.6963 1.2125 7 6 2.0329 -1.3051 -0.0006 8 6 1.1561 -2.4025 0.6090 9 6 1.9030 -3.7370 0.5500 10 7 2.2218 -4.0594 -0.8466 11 6 2.8161 -5.3984 -0.9554 12 6 2.7842 -5.8469 -2.3938 13 6 3.8569 -5.8446 -3.1774 14 16 3.4346 -6.4320 -4.7784 15 6 1.8063 -6.6621 -4.3235 16 6 1.6245 -6.3093 -3.0228 17 8 0.0955 -5.9235 -0.9677 18 8 -0.8761 -6.9831 -2.9634 19 6 3.1018 -3.0439 -1.4387 20 6 2.3908 -1.6888 -1.4392 21 1 -0.4850 0.8401 0.0004 22 1 2.9455 -1.2001 0.5860 23 1 0.2265 -2.4805 0.0453 24 1 0.9327 -2.1559 1.6469 25 1 2.8257 -3.6624 1.1254 26 1 1.2756 -4.5230 0.9701 27 1 3.8486 -5.3670 -0.6074 28 1 2.2476 -6.0989 -0.3437 29 1 4.8439 -5.5278 -2.8747 30 1 1.0310 -7.0377 -4.9748 31 1 -0.7945 -6.0274 -0.6039 32 1 -1.6859 -7.0005 -2.4352 33 1 3.3451 -3.3267 -2.4628 34 1 4.0188 -2.9726 -0.8539 35 1 1.4805 -1.7556 -2.0351 36 1 3.0494 -0.9317 -1.8646 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231946463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:19 Heat of formation + Delta-G solvation = 186.407689 kcal Electronic energy + Delta-G solvation = -19164.701736 eV Core-core repulsion = 16172.545026 eV Total energy + Delta-G solvation = -2992.156711 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.63300 -39.23577 -36.76845 -33.72472 -32.77926 -32.16635 -31.80765 -31.05298 -28.19632 -25.34019 -24.02097 -23.76891 -21.52077 -20.11665 -19.61307 -19.05370 -17.64352 -16.90445 -16.52770 -15.99045 -15.40963 -15.18832 -15.02145 -14.90576 -14.75699 -14.68342 -14.49578 -14.31199 -14.02067 -13.54812 -13.23848 -13.18256 -12.81810 -12.41889 -12.30486 -12.02498 -11.79887 -11.66067 -11.45843 -11.02025 -10.96656 -10.74152 -10.51180 -10.00807 -9.69081 -9.55453 -9.13815 -5.90264 -2.93496 -0.73660 -0.08520 0.40765 0.82023 0.85931 1.07984 1.35580 1.72398 1.82195 3.00376 3.02576 3.51291 3.55636 3.84002 3.93020 4.02216 4.06959 4.17140 4.20740 4.31664 4.41333 4.51686 4.63364 4.69906 4.71284 4.77200 4.89508 4.96244 5.13949 5.15206 5.28317 5.36031 5.71615 6.16718 6.24643 6.68225 6.95348 6.97542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.001 4.001 3 Si 0.925 3.075 4 H -0.236 1.236 5 H -0.250 1.250 6 H -0.237 1.237 7 C -0.060 4.060 8 C -0.097 4.097 9 C 0.064 3.936 10 N -0.517 5.517 11 C 0.121 3.879 12 C -0.082 4.082 13 C -0.224 4.224 14 S 0.311 5.689 15 C -0.272 4.272 16 C 0.320 3.680 17 O -0.570 6.570 18 O -0.674 6.674 19 C 0.052 3.948 20 C -0.105 4.105 21 H 0.335 0.665 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.197 0.803 30 H 0.205 0.795 31 H 0.332 0.668 32 H 0.330 0.670 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 1.244 -1.612 8.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.250 4.250 3 Si 0.742 3.258 4 H -0.159 1.159 5 H -0.173 1.173 6 H -0.160 1.160 7 C -0.080 4.080 8 C -0.135 4.135 9 C -0.063 4.063 10 N -0.241 5.241 11 C -0.009 4.009 12 C -0.095 4.095 13 C -0.361 4.361 14 S 0.580 5.420 15 C -0.406 4.406 16 C 0.287 3.713 17 O -0.398 6.398 18 O -0.502 6.502 19 C -0.076 4.076 20 C -0.144 4.144 21 H 0.151 0.849 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.214 0.786 30 H 0.222 0.778 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.287 1.145 -3.933 10.150 hybrid contribution -2.067 0.659 2.563 3.357 sum 7.221 1.804 -1.370 7.568 Atomic orbital electron populations 1.68193 1.10164 1.36656 1.08525 1.30206 0.96595 1.05575 0.92637 0.85883 0.81221 0.75579 0.83151 1.15857 1.17284 1.16026 1.20519 0.97919 0.91904 0.97621 1.21460 0.99573 0.91583 1.00873 1.22071 0.98640 0.98364 0.87273 1.61686 1.43750 1.00020 1.18636 1.20683 0.98604 0.92236 0.89354 1.18685 0.87584 1.02532 1.00706 1.25468 1.02844 1.10043 0.97713 1.84060 0.91362 1.58238 1.08329 1.26310 1.04914 1.11031 0.98381 1.28044 0.56414 1.04362 0.82451 1.93599 1.27559 1.85239 1.33435 1.93528 1.29793 1.87296 1.39540 1.22165 0.93687 0.91923 0.99836 1.21541 1.01597 0.95686 0.95541 0.84858 0.89843 0.89414 0.91702 0.95244 0.90228 0.93175 0.87671 0.78624 0.77802 0.83201 0.83502 0.90746 0.94661 0.90339 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 -1.05 12.65 56.23 0.71 -0.33 16 2 C 0.00 0.00 4.84 -13.90 -0.07 -0.07 16 3 Si 0.93 -0.96 29.37 -169.99 -4.99 -5.95 16 4 H -0.24 0.19 7.11 56.52 0.40 0.60 16 5 H -0.25 0.01 7.11 56.52 0.40 0.41 16 6 H -0.24 0.13 7.11 56.52 0.40 0.53 16 7 C -0.06 0.01 2.18 -91.64 -0.20 -0.19 16 8 C -0.10 -0.12 4.92 -26.65 -0.13 -0.25 16 9 C 0.06 0.05 5.43 -3.83 -0.02 0.03 16 10 N -0.52 -0.42 3.88 -236.13 -0.92 -1.34 16 11 C 0.12 -0.02 4.30 -4.98 -0.02 -0.04 16 12 C -0.08 0.05 4.62 -105.89 -0.49 -0.44 16 13 C -0.22 0.89 10.22 28.88 0.30 1.19 16 14 S 0.31 -1.34 23.08 -107.50 -2.48 -3.83 16 15 C -0.27 0.15 10.80 29.92 0.32 0.47 16 16 C 0.32 0.71 9.84 -39.81 -0.39 0.31 16 17 O -0.57 -3.48 14.24 -57.73 -0.82 -4.31 16 18 O -0.67 -6.16 17.59 -57.73 -1.02 -7.18 16 19 C 0.05 -0.05 5.30 -3.84 -0.02 -0.07 16 20 C -0.10 0.05 5.29 -26.65 -0.14 -0.09 16 21 H 0.33 0.09 8.23 -40.82 -0.34 -0.25 16 22 H 0.08 -0.15 7.85 -51.93 -0.41 -0.56 16 23 H 0.09 0.34 7.71 -51.93 -0.40 -0.06 16 24 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 25 H 0.03 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.08 0.15 7.74 -51.93 -0.40 -0.25 16 27 H 0.05 -0.12 7.99 -51.93 -0.41 -0.53 16 28 H 0.11 0.18 6.52 -51.93 -0.34 -0.16 16 29 H 0.20 -1.34 8.06 -52.49 -0.42 -1.77 16 30 H 0.21 -0.12 8.06 -52.49 -0.42 -0.55 16 31 H 0.33 1.45 8.90 45.56 0.41 1.86 16 32 H 0.33 2.17 8.90 45.56 0.41 2.57 16 33 H 0.07 -0.13 6.78 -51.93 -0.35 -0.48 16 34 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 35 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 36 H 0.07 -0.14 8.03 -51.93 -0.42 -0.56 16 LS Contribution 317.22 15.07 4.78 4.78 Total: 0.00 -8.85 317.22 -9.19 -18.04 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.59 Total: -0.76 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.86 Total: 0.87 kcal Atomic # 7 Polarization: -1.47 SS G_CDS: -0.20 Total: -1.67 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.84 Total: -11.48 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -4.99 Total: -5.95 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.48 Total: -3.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -8.85 -9.19 -18.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231946463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.444 kcal (2) G-P(sol) polarization free energy of solvation -8.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds