Wall clock time and date at job start Tue Mar 31 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27941 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47543 * 240.00454 * 3 2 1 5 5 H 1.48498 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47233 * 120.00688 * 3 2 1 7 7 C 1.50700 * 120.00097 * 180.02562 * 2 1 3 8 8 C 1.53123 * 109.52223 * 334.99419 * 7 2 1 9 9 C 1.53042 * 109.27711 * 177.55908 * 8 7 2 10 10 N 1.46845 * 109.51462 * 300.82372 * 9 8 7 11 11 C 1.46896 * 111.00039 * 185.83504 * 10 9 8 12 12 C 1.50702 * 109.47229 * 164.72918 * 11 10 9 13 13 C 1.32843 * 123.05776 * 103.68195 * 12 11 10 14 14 S 1.75687 * 110.05657 * 179.97438 * 13 12 11 15 15 C 1.70626 * 91.80315 * 359.97438 * 14 13 12 16 16 C 1.35985 * 110.34153 * 359.77243 * 15 14 13 17 Xx 1.56995 * 123.04590 * 180.25034 * 16 15 14 18 17 O 1.41996 * 120.00166 * 185.01189 * 17 16 15 19 18 O 1.42007 * 119.99697 * 5.01558 * 17 16 15 20 19 C 1.46834 * 111.20978 * 61.75038 * 10 9 8 21 20 C 1.53036 * 109.51811 * 298.24962 * 20 10 9 22 21 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 23 22 H 1.08994 * 109.57393 * 214.83298 * 7 2 1 24 23 H 1.08995 * 109.50054 * 57.61838 * 8 7 2 25 24 H 1.08996 * 109.53233 * 297.52054 * 8 7 2 26 25 H 1.08997 * 109.46016 * 60.83706 * 9 8 7 27 26 H 1.08996 * 109.45618 * 180.81518 * 9 8 7 28 27 H 1.09001 * 109.47216 * 284.72707 * 11 10 9 29 28 H 1.08997 * 109.47084 * 44.72991 * 11 10 9 30 29 H 1.07997 * 124.96767 * 359.96592 * 13 12 11 31 30 H 1.08000 * 124.83322 * 179.97438 * 15 14 13 32 31 H 0.96708 * 113.99896 * 179.97438 * 18 17 16 33 32 H 0.96698 * 113.99511 * 179.97438 * 19 17 16 34 33 H 1.08993 * 109.46679 * 178.23441 * 20 10 9 35 34 H 1.09003 * 109.45628 * 58.25300 * 20 10 9 36 35 H 1.09004 * 109.50006 * 299.23987 * 21 20 10 37 36 H 1.08995 * 109.54063 * 179.13945 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 3.0671 1.6965 -1.2125 5 1 1.2485 2.7465 0.0006 6 1 3.0673 1.6963 1.2125 7 6 2.0329 -1.3051 -0.0006 8 6 1.1561 -2.4025 0.6090 9 6 1.9030 -3.7370 0.5500 10 7 2.2218 -4.0594 -0.8466 11 6 2.8161 -5.3984 -0.9554 12 6 2.7842 -5.8469 -2.3938 13 6 3.8569 -5.8446 -3.1774 14 16 3.4346 -6.4320 -4.7784 15 6 1.8063 -6.6621 -4.3235 16 6 1.6245 -6.3093 -3.0228 17 8 0.0955 -5.9235 -0.9677 18 8 -0.8761 -6.9831 -2.9634 19 6 3.1018 -3.0439 -1.4387 20 6 2.3908 -1.6888 -1.4392 21 1 -0.4850 0.8401 0.0004 22 1 2.9455 -1.2001 0.5860 23 1 0.2265 -2.4805 0.0453 24 1 0.9327 -2.1559 1.6469 25 1 2.8257 -3.6624 1.1254 26 1 1.2756 -4.5230 0.9701 27 1 3.8486 -5.3670 -0.6074 28 1 2.2476 -6.0989 -0.3437 29 1 4.8439 -5.5278 -2.8747 30 1 1.0310 -7.0377 -4.9748 31 1 -0.7945 -6.0274 -0.6039 32 1 -1.6859 -7.0005 -2.4352 33 1 3.3451 -3.3267 -2.4628 34 1 4.0188 -2.9726 -0.8539 35 1 1.4805 -1.7556 -2.0351 36 1 3.0494 -0.9317 -1.8646 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231946463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:15 Heat of formation + Delta-G solvation = 180.670180 kcal Electronic energy + Delta-G solvation = -19164.950533 eV Core-core repulsion = 16172.545026 eV Total energy + Delta-G solvation = -2992.405508 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 3.68 seconds Orbital eigenvalues (eV) -40.65215 -39.30228 -36.80309 -33.77059 -33.09170 -32.38578 -31.82351 -31.09657 -28.15010 -25.34972 -24.03010 -23.84351 -21.52106 -20.13273 -19.62943 -18.93372 -17.65272 -16.89452 -16.51502 -15.99878 -15.48899 -15.40095 -15.01114 -14.99162 -14.90903 -14.72953 -14.47274 -14.30607 -13.99704 -13.54570 -13.22761 -13.13574 -12.75568 -12.36647 -12.24306 -12.02606 -11.84020 -11.64809 -11.47256 -11.32156 -11.02932 -10.90304 -10.51261 -10.02945 -9.91734 -9.69151 -9.06888 -6.38261 -2.99120 -0.76928 0.01206 0.38949 0.67161 0.89081 1.13390 1.45227 1.80057 1.87973 2.83831 3.06362 3.44826 3.57222 3.84560 3.98074 4.04395 4.07161 4.18485 4.28472 4.40729 4.44554 4.54674 4.69014 4.72827 4.74683 4.80990 4.89680 4.98999 5.09351 5.14705 5.26298 5.33947 5.59537 6.18251 6.29310 6.34365 6.68682 7.00088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.661 5.661 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.229 1.229 5 H -0.270 1.270 6 H -0.237 1.237 7 C -0.064 4.064 8 C -0.092 4.092 9 C 0.070 3.930 10 N -0.542 5.542 11 C 0.122 3.878 12 C -0.109 4.109 13 C -0.194 4.194 14 S 0.458 5.542 15 C -0.295 4.295 16 C 0.330 3.670 17 O -0.602 6.602 18 O -0.813 6.813 19 C 0.051 3.949 20 C -0.104 4.104 21 H 0.338 0.662 22 H 0.111 0.889 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.248 0.752 30 H 0.204 0.796 31 H 0.331 0.669 32 H 0.316 0.684 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.249 2.338 -3.331 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.252 4.252 3 Si 0.789 3.211 4 H -0.151 1.151 5 H -0.194 1.194 6 H -0.160 1.160 7 C -0.083 4.083 8 C -0.130 4.130 9 C -0.057 4.057 10 N -0.267 5.267 11 C -0.008 4.008 12 C -0.120 4.120 13 C -0.330 4.330 14 S 0.731 5.269 15 C -0.430 4.430 16 C 0.299 3.701 17 O -0.433 6.433 18 O -0.641 6.641 19 C -0.076 4.076 20 C -0.143 4.143 21 H 0.154 0.846 22 H 0.129 0.871 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.264 0.736 30 H 0.221 0.779 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.713 2.223 -5.720 16.869 hybrid contribution -3.481 0.403 2.889 4.542 sum 12.232 2.625 -2.830 12.827 Atomic orbital electron populations 1.68259 1.11518 1.37316 1.10301 1.30694 0.96416 1.07033 0.91070 0.85213 0.79829 0.72936 0.83140 1.15099 1.19437 1.16022 1.20667 0.98389 0.90930 0.98327 1.21334 0.98581 0.93028 1.00065 1.21928 0.98846 0.97015 0.87924 1.61582 1.45410 1.01182 1.18565 1.20660 0.99901 0.91078 0.89157 1.18720 0.86663 1.04984 1.01661 1.26098 1.02941 1.06545 0.97454 1.83973 0.84138 1.53335 1.05465 1.26891 1.08593 1.10172 0.97300 1.28203 0.47691 1.11157 0.83054 1.93523 1.27080 1.86122 1.36547 1.93471 1.33284 1.90317 1.47071 1.22265 0.93912 0.90590 1.00851 1.21551 1.00887 0.97176 0.94693 0.84555 0.87097 0.93245 0.92192 0.93168 0.92783 0.89374 0.90753 0.73589 0.77900 0.83388 0.85162 0.89308 0.92061 0.93423 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 104. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -3.72 12.65 24.11 0.30 -3.42 16 2 C 0.00 0.00 4.84 88.68 0.43 0.43 16 3 Si 0.97 -3.11 29.37 68.60 2.01 -1.09 16 4 H -0.23 0.98 7.11 99.48 0.71 1.69 16 5 H -0.27 -0.01 7.11 99.48 0.71 0.70 16 6 H -0.24 0.73 7.11 99.48 0.71 1.44 16 7 C -0.06 0.05 2.18 -11.46 -0.02 0.02 16 8 C -0.09 -0.43 4.92 30.65 0.15 -0.28 16 9 C 0.07 0.21 5.43 86.33 0.47 0.68 16 10 N -0.54 -0.97 3.88 -900.98 -3.50 -4.46 16 11 C 0.12 -0.14 4.30 85.56 0.37 0.22 16 12 C -0.11 0.38 4.62 -20.66 -0.10 0.28 16 13 C -0.19 2.73 10.22 66.64 0.68 3.41 16 14 S 0.46 -6.58 23.08 -56.49 -1.30 -7.89 16 15 C -0.29 0.60 10.80 67.30 0.73 1.32 16 16 C 0.33 1.81 9.84 22.12 0.22 2.03 16 17 O -0.60 -11.49 14.24 -127.47 -1.82 -13.31 16 18 O -0.81 -22.73 17.59 -127.47 -2.24 -24.97 16 19 C 0.05 -0.24 5.30 86.33 0.46 0.22 16 20 C -0.10 0.22 5.29 30.65 0.16 0.38 16 21 H 0.34 0.97 8.23 -92.71 -0.76 0.21 16 22 H 0.11 -0.67 7.85 -2.39 -0.02 -0.69 16 23 H 0.05 0.62 7.71 -2.39 -0.02 0.60 16 24 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.05 0.42 7.74 -2.39 -0.02 0.40 16 27 H 0.09 -0.76 7.99 -2.39 -0.02 -0.78 16 28 H 0.07 0.41 6.52 -2.39 -0.02 0.40 16 29 H 0.25 -5.68 8.06 -2.91 -0.02 -5.70 16 30 H 0.20 -0.03 8.06 -2.91 -0.02 -0.06 16 31 H 0.33 5.82 8.90 -74.05 -0.66 5.16 16 32 H 0.32 7.89 8.90 -74.06 -0.66 7.23 16 33 H 0.09 -0.70 6.78 -2.39 -0.02 -0.72 16 34 H 0.06 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.09 -0.66 8.03 -2.39 -0.02 -0.68 16 Total: 0.00 -34.24 317.22 -3.21 -37.45 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -0.21 Total: 8.98 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 3.54 Total: 8.71 kcal Atomic # 7 Polarization: -4.69 SS G_CDS: -3.19 Total: -7.88 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -4.06 Total: -38.28 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.01 Total: -1.09 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -1.30 Total: -7.89 kcal Total: -34.24 -3.21 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231946463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.122 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds