Wall clock time and date at job start Tue Mar 31 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40782 * 120.17859 * 204.36202 * 9 7 2 11 11 C 1.37709 * 120.04062 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41454 * 0.05068 * 11 10 9 13 13 C 1.39882 * 120.35542 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02157 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99420 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00215 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99764 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46976 * 179.97438 * 17 16 14 19 19 C 1.38243 * 120.00130 * 269.73135 * 18 17 16 20 20 C 1.38234 * 119.99764 * 179.76937 * 19 18 17 21 21 C 1.38233 * 120.00277 * 0.47599 * 20 19 18 22 22 C 1.38238 * 119.99786 * 359.79560 * 21 20 19 23 23 C 1.38231 * 120.00330 * 359.95690 * 22 21 20 24 24 C 1.39030 * 119.95217 * 359.97438 * 13 12 11 25 25 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.98168 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.79563 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.82123 * 179.97438 * 12 11 10 29 29 H 0.96996 * 119.99968 * 359.97438 * 16 14 13 30 30 H 1.08992 * 109.47231 * 300.00018 * 17 16 14 31 31 H 1.08999 * 109.47030 * 59.99886 * 17 16 14 32 32 H 1.07997 * 119.99515 * 359.97438 * 19 18 17 33 33 H 1.07996 * 119.99869 * 180.25173 * 20 19 18 34 34 H 1.08000 * 120.00370 * 179.77520 * 21 20 19 35 35 H 1.08002 * 120.00202 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.00393 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.20691 * 179.73118 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8274 -3.6500 0.0858 11 6 1.1862 -4.8122 -0.2808 12 6 0.0738 -4.7693 -1.1026 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2181 -4.6534 -2.7977 17 6 -3.3964 -4.6164 -3.6675 18 6 -3.8897 -6.0204 -3.9051 19 6 -3.4127 -6.7481 -4.9793 20 6 -3.8617 -8.0377 -5.1944 21 6 -4.7950 -8.5961 -4.3412 22 6 -5.2761 -7.8663 -3.2703 23 6 -4.8234 -6.5786 -3.0521 24 6 0.2225 -2.3613 -1.2087 25 1 -0.4850 0.8399 -0.0004 26 1 2.6951 -3.6917 0.7276 27 1 1.5541 -5.7633 0.0751 28 1 -0.4214 -5.6867 -1.3845 29 1 -1.8806 -5.5033 -2.4742 30 1 -4.1820 -4.0307 -3.1903 31 1 -3.1303 -4.1590 -4.6204 32 1 -2.6868 -6.3103 -5.6484 33 1 -3.4860 -8.6077 -6.0312 34 1 -5.1485 -9.6023 -4.5113 35 1 -6.0056 -8.3023 -2.6038 36 1 -5.1990 -6.0085 -2.2152 37 1 -0.1471 -1.4134 -1.5709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042191390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:41 Heat of formation + Delta-G solvation = -0.626608 kcal Electronic energy + Delta-G solvation = -20178.980265 eV Core-core repulsion = 17078.187620 eV Total energy + Delta-G solvation = -3100.792645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69875 -38.82317 -36.99252 -34.58773 -33.71883 -31.48932 -31.05874 -29.94767 -29.41928 -26.21124 -25.17954 -22.72526 -22.44078 -21.31126 -20.86155 -19.54357 -17.84969 -16.98669 -16.14610 -15.52657 -15.48927 -15.22678 -14.92125 -14.54814 -14.20558 -13.72286 -13.55929 -13.27497 -12.94322 -12.80166 -12.54663 -12.44104 -12.36618 -11.63709 -11.19906 -11.19476 -11.14200 -11.06637 -10.73109 -10.48302 -10.03349 -9.68338 -9.27702 -9.21132 -9.08957 -8.79084 -8.66719 -7.62632 -7.51632 -6.79880 -4.40900 1.10794 1.23789 2.21478 2.81179 3.08351 3.13231 3.15354 3.47045 3.87187 3.92525 4.00392 4.60520 4.63795 4.72424 4.83817 4.96475 5.28259 5.33463 5.56903 5.58896 5.63840 5.80972 5.90942 5.95426 6.09941 6.27497 6.28726 6.33194 6.48808 6.72236 6.80301 6.85214 6.99225 7.02533 7.21650 7.38605 7.70867 7.76664 7.93219 8.10104 8.19643 8.51220 8.80655 8.83915 8.95090 10.14820 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030905 B = 0.003444 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.780766 B = 8128.261622 C = 8661.170527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.564 3.436 15 O -0.546 6.546 16 N -0.733 5.733 17 C 0.161 3.839 18 C -0.101 4.101 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.092 4.092 25 H 0.284 0.716 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.400 0.600 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.609 -12.370 -6.570 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.354 3.646 15 O -0.424 6.424 16 N -0.387 5.387 17 C 0.037 3.963 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.112 4.112 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.236 0.764 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.134 -11.410 -6.854 15.599 hybrid contribution 0.389 0.189 0.231 0.490 sum -7.745 -11.221 -6.623 15.158 Atomic orbital electron populations 1.69797 1.07584 1.29683 1.33630 1.25972 0.94767 1.01571 0.92313 0.86240 0.80885 0.80831 0.78682 1.18340 1.19544 1.19925 1.19619 0.98239 0.91037 1.39934 0.90039 1.17607 0.91179 0.92468 0.89178 1.21097 1.03473 0.92762 1.05819 1.20433 0.96032 0.96734 0.98400 1.20346 1.01309 0.94623 1.07519 1.19462 0.96498 0.95312 1.01795 1.18877 0.83312 0.82761 0.79611 1.90697 1.66324 1.29878 1.55540 1.46005 1.30552 1.09872 1.52275 1.20101 0.88569 0.92160 0.95429 1.20007 0.97869 0.96182 0.96075 1.21157 0.99205 0.94389 0.97253 1.21157 0.97821 0.95436 0.99728 1.21189 0.97388 0.99800 0.95248 1.21163 1.00332 0.94611 0.98011 1.21167 0.96617 0.95440 0.98752 1.21633 0.96457 0.96434 0.96724 0.90486 0.88617 0.88917 0.89276 0.76436 0.90957 0.91002 0.85758 0.85985 0.86147 0.85971 0.85726 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.81 10.95 55.55 0.61 -20.20 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 9 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 10 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 11 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 12 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C 0.56 12.47 7.77 -12.31 -0.10 12.38 16 15 O -0.55 -13.82 16.33 5.32 0.09 -13.73 16 16 N -0.73 -12.42 5.50 -62.42 -0.34 -12.76 16 17 C 0.16 2.31 5.80 -5.19 -0.03 2.28 16 18 C -0.10 -1.20 5.25 -104.62 -0.55 -1.75 16 19 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 24 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 25 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 26 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 27 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.09 1.59 6.38 -52.48 -0.33 1.25 16 29 H 0.40 6.10 6.48 -40.82 -0.26 5.83 16 30 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 3.88 5.74 -52.49 -0.30 3.57 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -30.01 322.65 -9.81 -39.82 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.25 Total: 10.92 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -5.74 Total: -22.69 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.27 Total: -32.96 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.01 -9.81 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042191390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.191 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds