Wall clock time and date at job start Tue Mar 31 2020 05:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40782 * 120.17859 * 204.36202 * 9 7 2 11 11 C 1.37709 * 120.04062 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41454 * 0.05068 * 11 10 9 13 13 C 1.39882 * 120.35542 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02157 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99420 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00215 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99764 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46976 * 179.97438 * 17 16 14 19 19 C 1.38243 * 120.00130 * 269.73135 * 18 17 16 20 20 C 1.38234 * 119.99764 * 179.76937 * 19 18 17 21 21 C 1.38233 * 120.00277 * 0.47599 * 20 19 18 22 22 C 1.38238 * 119.99786 * 359.79560 * 21 20 19 23 23 C 1.38231 * 120.00330 * 359.95690 * 22 21 20 24 24 C 1.39030 * 119.95217 * 359.97438 * 13 12 11 25 25 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.98168 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.79563 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.82123 * 179.97438 * 12 11 10 29 29 H 0.96996 * 119.99968 * 359.97438 * 16 14 13 30 30 H 1.08992 * 109.47231 * 300.00018 * 17 16 14 31 31 H 1.08999 * 109.47030 * 59.99886 * 17 16 14 32 32 H 1.07997 * 119.99515 * 359.97438 * 19 18 17 33 33 H 1.07996 * 119.99869 * 180.25173 * 20 19 18 34 34 H 1.08000 * 120.00370 * 179.77520 * 21 20 19 35 35 H 1.08002 * 120.00202 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.00393 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.20691 * 179.73118 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8274 -3.6500 0.0858 11 6 1.1862 -4.8122 -0.2808 12 6 0.0738 -4.7693 -1.1026 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2181 -4.6534 -2.7977 17 6 -3.3964 -4.6164 -3.6675 18 6 -3.8897 -6.0204 -3.9051 19 6 -3.4127 -6.7481 -4.9793 20 6 -3.8617 -8.0377 -5.1944 21 6 -4.7950 -8.5961 -4.3412 22 6 -5.2761 -7.8663 -3.2703 23 6 -4.8234 -6.5786 -3.0521 24 6 0.2225 -2.3613 -1.2087 25 1 -0.4850 0.8399 -0.0004 26 1 2.6951 -3.6917 0.7276 27 1 1.5541 -5.7633 0.0751 28 1 -0.4214 -5.6867 -1.3845 29 1 -1.8806 -5.5033 -2.4742 30 1 -4.1820 -4.0307 -3.1903 31 1 -3.1303 -4.1590 -4.6204 32 1 -2.6868 -6.3103 -5.6484 33 1 -3.4860 -8.6077 -6.0312 34 1 -5.1485 -9.6023 -4.5113 35 1 -6.0056 -8.3023 -2.6038 36 1 -5.1990 -6.0085 -2.2152 37 1 -0.1471 -1.4134 -1.5709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042191390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:40 Heat of formation + Delta-G solvation = -17.222749 kcal Electronic energy + Delta-G solvation = -20179.699928 eV Core-core repulsion = 17078.187620 eV Total energy + Delta-G solvation = -3101.512308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05694 -40.02706 -38.79285 -36.03526 -35.55447 -32.80602 -31.80523 -31.56147 -31.25265 -27.59017 -26.90199 -24.05979 -23.47882 -22.83234 -22.17838 -21.24734 -19.58322 -18.23896 -17.46969 -17.20071 -16.71260 -16.55903 -16.43181 -15.85899 -15.59881 -15.31463 -15.05653 -14.42847 -14.30884 -14.27678 -13.87784 -13.72998 -13.49247 -13.40976 -12.95779 -12.79378 -12.54723 -12.18945 -12.01371 -11.92536 -11.91488 -11.50786 -11.08592 -10.89916 -10.20863 -9.83803 -9.76896 -9.48421 -9.39541 -8.67204 -6.38572 0.29455 0.36352 0.48605 0.99745 1.36523 1.46462 1.52963 2.08000 2.19115 2.27479 2.77740 2.95482 3.63317 3.69108 3.91549 4.02953 4.14942 4.29848 4.34783 4.40974 4.57350 4.58270 4.66752 4.76170 4.90603 5.04235 5.08363 5.15321 5.18273 5.30248 5.38511 5.51151 5.53960 5.60685 5.65368 5.85631 5.91795 6.04729 6.07897 6.27588 6.49324 6.66144 6.87349 6.93923 7.26697 8.29778 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030905 B = 0.003444 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.780766 B = 8128.261622 C = 8661.170527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.199 4.199 13 C -0.139 4.139 14 C 0.560 3.440 15 O -0.589 6.589 16 N -0.708 5.708 17 C 0.162 3.838 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.131 4.131 25 H 0.287 0.713 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.411 0.589 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -15.550 -6.829 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.218 4.218 13 C -0.142 4.142 14 C 0.350 3.650 15 O -0.470 6.470 16 N -0.361 5.361 17 C 0.040 3.960 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.131 4.131 24 C -0.151 4.151 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.249 0.751 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.257 -14.659 -7.112 18.266 hybrid contribution 0.330 0.896 0.258 0.989 sum -7.928 -13.763 -6.854 17.299 Atomic orbital electron populations 1.69895 1.09277 1.30585 1.35265 1.26875 0.95413 1.05025 0.91321 0.85142 0.79665 0.76045 0.78774 1.17398 1.19552 1.18842 1.19893 0.98606 0.92177 1.41851 0.89734 1.17954 0.91731 0.93966 0.89854 1.21411 1.03898 0.92731 1.05581 1.20917 0.95292 0.97767 0.97306 1.20826 1.00609 0.95005 1.05396 1.19765 0.96931 0.95562 1.01920 1.18772 0.83235 0.83479 0.79494 1.90671 1.67438 1.31738 1.57196 1.45825 1.30390 1.08657 1.51239 1.20168 0.87139 0.94342 0.94384 1.19767 0.99375 0.94828 0.97588 1.21284 0.99514 0.95173 0.96973 1.21463 0.97566 0.94838 1.00410 1.21583 0.96387 1.00896 0.94320 1.21457 1.00434 0.93895 0.98550 1.21280 0.96680 0.96371 0.98769 1.21438 0.98300 0.96356 0.99037 0.90291 0.87242 0.84349 0.84958 0.75108 0.91739 0.91453 0.85517 0.83682 0.83350 0.83799 0.85756 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.47 10.95 21.82 0.24 -46.23 16 2 C 0.03 1.51 5.14 85.25 0.44 1.95 16 3 Si 0.98 39.94 29.60 68.60 2.03 41.97 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.50 -27.23 9.05 23.47 0.21 -27.02 16 8 H 0.08 4.38 7.91 -2.91 -0.02 4.35 16 9 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 10 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 11 C -0.09 -3.80 10.01 22.18 0.22 -3.58 16 12 C -0.20 -7.97 9.55 22.70 0.22 -7.75 16 13 C -0.14 -6.69 5.87 -20.13 -0.12 -6.81 16 14 C 0.56 25.29 7.77 86.80 0.67 25.96 16 15 O -0.59 -31.30 16.33 -3.87 -0.06 -31.36 16 16 N -0.71 -23.52 5.50 -469.67 -2.58 -26.10 16 17 C 0.16 4.66 5.80 85.63 0.50 5.16 16 18 C -0.12 -2.59 5.25 -19.86 -0.10 -2.69 16 19 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 20 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 21 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 22 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.11 -2.25 9.70 22.27 0.22 -2.04 16 24 C -0.13 -7.37 8.23 23.01 0.19 -7.18 16 25 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 26 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 27 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.13 4.12 6.38 -2.91 -0.02 4.10 16 29 H 0.41 11.59 6.48 -92.71 -0.60 10.99 16 30 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 31 H 0.07 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.10 6.20 5.74 -2.91 -0.02 6.19 16 Total: -1.00 -69.42 322.65 3.55 -65.87 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.49 Total: 33.03 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.43 Total: -37.18 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -2.34 Total: -72.33 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.06 Total: -31.36 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -69.42 3.55 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042191390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.645 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds