Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38127 * 120.03582 * 2 1 4 4 C 1.38267 * 120.06919 * 179.97438 * 3 2 1 5 5 C 1.38299 * 120.14768 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.06970 * 359.74986 * 5 4 3 7 7 C 1.38865 * 120.03453 * 179.97438 * 2 1 3 8 8 N 1.39847 * 120.07554 * 0.02562 * 7 2 1 9 9 C 1.34770 * 120.00351 * 145.78115 * 8 7 2 10 10 O 1.21560 * 119.99903 * 3.88574 * 9 8 7 11 11 C 1.47851 * 120.00160 * 183.88671 * 9 8 7 12 12 C 1.39938 * 120.02777 * 359.72605 * 11 9 8 13 13 C 1.38325 * 120.35979 * 179.69709 * 12 11 9 14 14 C 1.37758 * 120.41070 * 0.59944 * 13 12 11 15 15 C 1.40755 * 120.04425 * 359.68111 * 14 13 12 16 16 C 1.41435 * 120.17809 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99782 * 34.65433 * 16 15 14 18 18 C 1.39938 * 120.00211 * 214.64928 * 16 15 14 19 19 N 1.30831 * 119.99890 * 355.73460 * 18 16 15 20 20 Si 1.86796 * 120.00231 * 175.72685 * 18 16 15 21 21 H 1.48498 * 109.46791 * 90.00556 * 20 18 16 22 22 H 1.48495 * 109.46995 * 210.00287 * 20 18 16 23 23 H 1.48502 * 109.47114 * 330.00538 * 20 18 16 24 24 C 1.39014 * 120.03053 * 180.02562 * 11 9 8 25 25 H 1.08999 * 109.47271 * 270.03230 * 1 2 3 26 26 H 1.08998 * 109.46681 * 30.02607 * 1 2 3 27 27 H 1.08994 * 109.47170 * 150.02690 * 1 2 3 28 28 H 1.07997 * 119.96885 * 359.97004 * 3 2 1 29 29 H 1.08002 * 119.92442 * 179.97438 * 4 3 2 30 30 H 1.08004 * 119.96884 * 180.02562 * 5 4 3 31 31 H 1.08005 * 120.03582 * 180.27273 * 6 5 4 32 32 H 0.96998 * 119.99599 * 325.50136 * 8 7 2 33 33 H 1.07998 * 119.81848 * 359.97438 * 12 11 9 34 34 H 1.07998 * 119.79796 * 180.30299 * 13 12 11 35 35 H 1.07998 * 119.98000 * 179.69882 * 14 13 12 36 36 H 0.96990 * 120.00159 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.19931 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2763 0.0011 0.0005 6 6 3.5911 -1.1978 0.0052 7 6 2.2021 -1.2022 0.0005 8 7 1.5051 -2.4146 0.0005 9 6 2.0063 -3.4800 -0.6554 10 8 3.0969 -3.4083 -1.1873 11 6 1.2295 -4.7359 -0.7279 12 6 -0.0236 -4.8209 -0.1109 13 6 -0.7590 -5.9905 -0.1798 14 6 -0.2613 -7.0889 -0.8458 15 6 0.9998 -7.0242 -1.4677 16 6 1.5133 -8.1501 -2.1527 17 1 0.8443 -8.8086 -2.6867 18 6 2.8881 -8.4107 -2.1386 19 7 3.7076 -7.5688 -1.5630 20 14 3.5532 -9.9607 -2.9413 21 1 3.8725 -9.6829 -4.3647 22 1 4.7842 -10.3954 -2.2336 23 1 2.5317 -11.0358 -2.8638 24 6 1.7460 -5.8354 -1.4039 25 1 -0.3634 0.0006 1.0276 26 1 -0.3632 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6585 2.1311 -0.0005 29 1 4.1193 2.1329 0.0001 30 1 5.3564 0.0051 0.0014 31 1 4.1347 -2.1311 0.0097 32 1 0.6631 -2.4899 0.4760 33 1 -0.4207 -3.9672 0.4181 34 1 -1.7272 -6.0445 0.2955 35 1 -0.8392 -8.0001 -0.8912 36 1 4.6604 -7.7496 -1.5529 37 1 2.7146 -5.7758 -1.8778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042191811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = 3.661704 kcal Electronic energy + Delta-G solvation = -20670.249190 eV Core-core repulsion = 17569.642499 eV Total energy + Delta-G solvation = -3100.606690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29801 -38.43923 -37.03014 -34.50703 -33.67113 -32.44738 -30.67799 -29.53385 -29.03421 -26.76903 -25.35790 -23.59745 -21.97153 -21.17103 -20.80413 -19.57231 -17.95825 -17.27362 -16.03687 -15.67665 -15.25707 -15.07365 -14.76041 -14.29716 -13.91848 -13.72349 -13.56814 -13.21190 -12.98785 -12.72548 -12.61935 -12.35606 -12.01458 -11.73327 -11.33960 -11.20029 -11.12537 -11.08550 -10.79554 -10.50793 -10.10484 -9.96605 -9.80577 -9.33127 -9.08939 -8.58124 -7.93043 -7.65910 -7.47594 -6.69364 -4.50734 1.40586 1.54732 2.12021 2.77095 3.06948 3.08143 3.12858 3.49692 3.66140 3.92679 4.00836 4.64352 4.89283 4.95718 5.20845 5.30091 5.41627 5.48332 5.55938 5.62569 5.70233 5.85307 5.95928 6.00268 6.15658 6.22701 6.47878 6.57587 6.64665 6.68399 6.76931 6.89993 6.94580 7.20236 7.27706 7.30785 7.59155 7.65074 7.82620 7.97692 8.13718 8.46140 8.72251 8.77933 8.81630 10.21556 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.004250 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.104233 B = 6585.957726 C = 7617.281755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.143 4.143 5 C -0.108 4.108 6 C -0.121 4.121 7 C 0.159 3.841 8 N -0.677 5.677 9 C 0.564 3.436 10 O -0.522 6.522 11 C -0.137 4.137 12 C -0.205 4.205 13 C -0.105 4.105 14 C -0.196 4.196 15 C 0.093 3.907 16 C -0.464 4.464 17 H 0.080 0.920 18 C 0.069 3.931 19 N -0.803 5.803 20 Si 0.918 3.082 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.077 4.077 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.282 0.718 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 11.962 3.935 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.124 4.124 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.141 4.141 7 C 0.064 3.936 8 N -0.323 5.323 9 C 0.356 3.644 10 O -0.398 6.398 11 C -0.140 4.140 12 C -0.225 4.225 13 C -0.124 4.124 14 C -0.216 4.216 15 C 0.091 3.909 16 C -0.494 4.494 17 H 0.098 0.902 18 C -0.148 4.148 19 N -0.429 5.429 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.097 4.097 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.093 11.947 3.571 12.643 hybrid contribution -0.059 -0.686 0.031 0.689 sum -2.151 11.261 3.602 12.017 Atomic orbital electron populations 1.20722 0.91177 1.03083 1.02111 1.19693 0.96017 0.91946 1.04798 1.20754 0.94138 0.96596 1.00903 1.21028 0.94198 0.97868 1.03124 1.21033 0.99792 0.92026 0.99801 1.21423 0.92840 0.99613 1.00248 1.17693 0.91498 0.85032 0.99371 1.43640 1.25857 1.09384 1.53430 1.19015 0.85659 0.83317 0.76411 1.90702 1.20658 1.82968 1.45515 1.19459 0.95774 0.93089 1.05703 1.20419 0.95958 0.98124 1.08002 1.20461 0.98080 0.93663 1.00150 1.21293 0.99382 0.97533 1.03361 1.17659 0.90695 0.92078 0.90457 1.19538 0.92325 1.08521 1.28989 0.90231 1.25933 0.96937 0.98226 0.93686 1.69710 1.04955 1.34156 1.34047 0.86150 0.78755 0.81243 0.79613 1.19374 1.20176 1.18662 1.21972 1.00997 0.89514 0.97249 0.91344 0.91351 0.91454 0.86151 0.86412 0.86057 0.84047 0.75373 0.89168 0.88620 0.88323 0.90652 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.47 36.01 0.34 -0.88 16 2 C -0.12 -1.66 5.90 -104.43 -0.62 -2.27 16 3 C -0.11 -1.27 9.70 -39.61 -0.38 -1.66 16 4 C -0.14 -1.74 10.04 -39.55 -0.40 -2.14 16 5 C -0.11 -1.51 10.04 -39.61 -0.40 -1.90 16 6 C -0.12 -2.06 8.69 -39.39 -0.34 -2.40 16 7 C 0.16 2.62 6.29 -83.72 -0.53 2.10 16 8 N -0.68 -11.67 4.70 -10.72 -0.05 -11.72 16 9 C 0.56 12.20 7.61 -12.33 -0.09 12.10 16 10 O -0.52 -12.77 13.75 5.31 0.07 -12.70 16 11 C -0.14 -3.15 5.87 -105.04 -0.62 -3.77 16 12 C -0.21 -4.15 9.55 -38.91 -0.37 -4.52 16 13 C -0.11 -2.16 10.01 -39.73 -0.40 -2.55 16 14 C -0.20 -4.51 9.78 -38.81 -0.38 -4.89 16 15 C 0.09 2.42 5.55 -106.87 -0.59 1.83 16 16 C -0.46 -12.04 9.04 -37.73 -0.34 -12.38 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 18 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 19 N -0.80 -21.17 10.60 55.55 0.59 -20.58 16 20 Si 0.92 18.81 29.56 -169.99 -5.03 13.79 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.08 -2.02 8.21 -38.44 -0.32 -2.33 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.07 0.77 7.17 -51.93 -0.37 0.40 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.14 2.72 6.20 -52.48 -0.33 2.39 16 32 H 0.41 5.96 5.86 -40.82 -0.24 5.72 16 33 H 0.09 1.48 6.39 -52.49 -0.34 1.15 16 34 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 37 H 0.15 4.14 5.72 -52.49 -0.30 3.84 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -29.03 315.09 -9.27 -38.30 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.08 Total: 12.19 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -5.53 Total: -24.03 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.54 Total: -32.30 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.03 -9.27 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042191811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.960 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds