Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38127 * 120.03582 * 2 1 4 4 C 1.38267 * 120.06919 * 179.97438 * 3 2 1 5 5 C 1.38299 * 120.14768 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.06970 * 359.74986 * 5 4 3 7 7 C 1.38865 * 120.03453 * 179.97438 * 2 1 3 8 8 N 1.39847 * 120.07554 * 0.02562 * 7 2 1 9 9 C 1.34770 * 120.00351 * 145.78115 * 8 7 2 10 10 O 1.21560 * 119.99903 * 3.88574 * 9 8 7 11 11 C 1.47851 * 120.00160 * 183.88671 * 9 8 7 12 12 C 1.39938 * 120.02777 * 359.72605 * 11 9 8 13 13 C 1.38325 * 120.35979 * 179.69709 * 12 11 9 14 14 C 1.37758 * 120.41070 * 0.59944 * 13 12 11 15 15 C 1.40755 * 120.04425 * 359.68111 * 14 13 12 16 16 C 1.41435 * 120.17809 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99782 * 34.65433 * 16 15 14 18 18 C 1.39938 * 120.00211 * 214.64928 * 16 15 14 19 19 N 1.30831 * 119.99890 * 355.73460 * 18 16 15 20 20 Si 1.86796 * 120.00231 * 175.72685 * 18 16 15 21 21 H 1.48498 * 109.46791 * 90.00556 * 20 18 16 22 22 H 1.48495 * 109.46995 * 210.00287 * 20 18 16 23 23 H 1.48502 * 109.47114 * 330.00538 * 20 18 16 24 24 C 1.39014 * 120.03053 * 180.02562 * 11 9 8 25 25 H 1.08999 * 109.47271 * 270.03230 * 1 2 3 26 26 H 1.08998 * 109.46681 * 30.02607 * 1 2 3 27 27 H 1.08994 * 109.47170 * 150.02690 * 1 2 3 28 28 H 1.07997 * 119.96885 * 359.97004 * 3 2 1 29 29 H 1.08002 * 119.92442 * 179.97438 * 4 3 2 30 30 H 1.08004 * 119.96884 * 180.02562 * 5 4 3 31 31 H 1.08005 * 120.03582 * 180.27273 * 6 5 4 32 32 H 0.96998 * 119.99599 * 325.50136 * 8 7 2 33 33 H 1.07998 * 119.81848 * 359.97438 * 12 11 9 34 34 H 1.07998 * 119.79796 * 180.30299 * 13 12 11 35 35 H 1.07998 * 119.98000 * 179.69882 * 14 13 12 36 36 H 0.96990 * 120.00159 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.19931 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2763 0.0011 0.0005 6 6 3.5911 -1.1978 0.0052 7 6 2.2021 -1.2022 0.0005 8 7 1.5051 -2.4146 0.0005 9 6 2.0063 -3.4800 -0.6554 10 8 3.0969 -3.4083 -1.1873 11 6 1.2295 -4.7359 -0.7279 12 6 -0.0236 -4.8209 -0.1109 13 6 -0.7590 -5.9905 -0.1798 14 6 -0.2613 -7.0889 -0.8458 15 6 0.9998 -7.0242 -1.4677 16 6 1.5133 -8.1501 -2.1527 17 1 0.8443 -8.8086 -2.6867 18 6 2.8881 -8.4107 -2.1386 19 7 3.7076 -7.5688 -1.5630 20 14 3.5532 -9.9607 -2.9413 21 1 3.8725 -9.6829 -4.3647 22 1 4.7842 -10.3954 -2.2336 23 1 2.5317 -11.0358 -2.8638 24 6 1.7460 -5.8354 -1.4039 25 1 -0.3634 0.0006 1.0276 26 1 -0.3632 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6585 2.1311 -0.0005 29 1 4.1193 2.1329 0.0001 30 1 5.3564 0.0051 0.0014 31 1 4.1347 -2.1311 0.0097 32 1 0.6631 -2.4899 0.4760 33 1 -0.4207 -3.9672 0.4181 34 1 -1.7272 -6.0445 0.2955 35 1 -0.8392 -8.0001 -0.8912 36 1 4.6604 -7.7496 -1.5529 37 1 2.7146 -5.7758 -1.8778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042191811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -11.776046 kcal Electronic energy + Delta-G solvation = -20670.918621 eV Core-core repulsion = 17569.642499 eV Total energy + Delta-G solvation = -3101.276121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71783 -39.85456 -38.72944 -35.98352 -35.45753 -33.49466 -32.33958 -31.33038 -30.35732 -27.78238 -27.18492 -25.11124 -23.30951 -22.82033 -22.09267 -21.17817 -19.61435 -18.70474 -17.69730 -17.10639 -16.65512 -16.49102 -16.40889 -15.85184 -15.32640 -15.11342 -14.84663 -14.59609 -14.41551 -14.34867 -14.03279 -13.58909 -13.23910 -12.99611 -12.89904 -12.82810 -12.55260 -12.37158 -12.19290 -12.16597 -11.87484 -11.57916 -11.35171 -11.14609 -10.75926 -9.66972 -9.58652 -9.31513 -9.02204 -8.53994 -6.46238 0.09196 0.44511 0.55253 0.99394 1.36662 1.44525 1.52006 2.00515 2.07919 2.20983 2.77627 2.88712 3.60876 3.81588 3.96116 3.99308 4.23838 4.35647 4.41936 4.51496 4.54223 4.62730 4.81943 4.83257 4.87049 5.03016 5.06597 5.13196 5.28335 5.32466 5.40055 5.47732 5.49501 5.59467 5.63061 5.81405 5.86280 6.06594 6.12779 6.26071 6.42406 6.60443 6.89005 6.92686 7.15112 8.38043 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.004250 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.104233 B = 6585.957726 C = 7617.281755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.131 4.131 5 C -0.119 4.119 6 C -0.151 4.151 7 C 0.123 3.877 8 N -0.656 5.656 9 C 0.560 3.440 10 O -0.564 6.564 11 C -0.147 4.147 12 C -0.183 4.183 13 C -0.102 4.102 14 C -0.198 4.198 15 C 0.060 3.940 16 C -0.500 4.500 17 H 0.083 0.917 18 C 0.022 3.978 19 N -0.845 5.845 20 Si 0.990 3.010 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.116 4.116 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.422 0.578 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.282 0.718 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 14.452 5.102 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.119 4.119 3 C -0.120 4.120 4 C -0.150 4.150 5 C -0.137 4.137 6 C -0.172 4.172 7 C 0.029 3.971 8 N -0.302 5.302 9 C 0.351 3.649 10 O -0.444 6.444 11 C -0.150 4.150 12 C -0.202 4.202 13 C -0.120 4.120 14 C -0.217 4.217 15 C 0.058 3.942 16 C -0.531 4.531 17 H 0.101 0.899 18 C -0.189 4.189 19 N -0.473 5.473 20 Si 0.810 3.190 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.137 4.137 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.262 0.738 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.667 14.476 4.769 15.940 hybrid contribution 0.615 -1.188 -0.224 1.356 sum -4.052 13.288 4.545 14.617 Atomic orbital electron populations 1.20821 0.88835 1.03775 1.03683 1.20075 0.97765 0.91068 1.03028 1.21265 0.94285 0.97483 0.99000 1.21474 0.94720 0.98255 1.00534 1.21255 1.00740 0.91831 0.99880 1.21323 0.93666 0.99414 1.02753 1.17948 0.91470 0.85525 1.02175 1.43273 1.25954 1.08762 1.52214 1.18928 0.85117 0.84086 0.76731 1.90685 1.22361 1.83731 1.47575 1.19722 0.97093 0.92887 1.05334 1.20952 0.94043 0.99652 1.05554 1.20968 0.99731 0.92411 0.98843 1.21602 0.98164 0.99240 1.02737 1.17990 0.92293 0.92073 0.91802 1.19832 0.93262 1.09364 1.30627 0.89895 1.26859 0.96919 1.01275 0.93890 1.69872 1.05067 1.36199 1.36154 0.85082 0.78170 0.77261 0.78453 1.18987 1.19718 1.17493 1.21733 1.00556 0.91414 0.99985 0.89192 0.89098 0.92365 0.82230 0.82823 0.84734 0.87894 0.73833 0.84397 0.83797 0.86839 0.90750 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.47 71.24 0.67 -1.31 16 2 C -0.12 -2.84 5.90 -19.74 -0.12 -2.96 16 3 C -0.10 -2.04 9.70 22.25 0.22 -1.82 16 4 C -0.13 -2.76 10.04 22.29 0.22 -2.54 16 5 C -0.12 -3.25 10.04 22.25 0.22 -3.03 16 6 C -0.15 -5.36 8.69 22.40 0.19 -5.17 16 7 C 0.12 4.01 6.29 38.17 0.24 4.25 16 8 N -0.66 -22.47 4.70 -306.10 -1.44 -23.91 16 9 C 0.56 25.29 7.61 86.79 0.66 25.95 16 10 O -0.56 -29.93 13.75 -3.90 -0.05 -29.99 16 11 C -0.15 -6.95 5.87 -20.13 -0.12 -7.07 16 12 C -0.18 -6.97 9.55 22.70 0.22 -6.75 16 13 C -0.10 -3.86 10.01 22.18 0.22 -3.64 16 14 C -0.20 -9.00 9.78 22.77 0.22 -8.78 16 15 C 0.06 3.27 5.55 -21.32 -0.12 3.15 16 16 C -0.50 -27.34 9.04 23.47 0.21 -27.13 16 17 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 18 C 0.02 1.18 5.42 85.25 0.46 1.64 16 19 N -0.85 -48.09 10.60 21.83 0.23 -47.86 16 20 Si 0.99 40.27 29.56 68.60 2.03 42.30 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 24 C -0.12 -6.48 8.21 23.01 0.19 -6.29 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 27 H 0.06 1.13 7.17 -2.39 -0.02 1.11 16 28 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.10 4.39 6.20 -2.91 -0.02 4.37 16 32 H 0.42 11.42 5.86 -92.71 -0.54 10.88 16 33 H 0.14 3.90 6.39 -2.91 -0.02 3.88 16 34 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.28 14.89 8.30 -92.72 -0.77 14.13 16 37 H 0.11 6.77 5.72 -2.91 -0.02 6.76 16 Total: -1.00 -70.89 315.09 4.93 -65.96 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.56 Total: 34.99 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 3.61 Total: -41.51 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.21 Total: -71.76 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -70.89 4.93 -65.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042191811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.186 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds