Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38305 * 119.96007 * 2 1 4 4 C 1.38265 * 120.14296 * 179.97438 * 3 2 1 5 5 C 1.38130 * 120.07171 * 0.29874 * 4 3 2 6 6 C 1.38873 * 119.92434 * 359.45383 * 5 4 3 7 7 N 1.39852 * 120.07124 * 180.27595 * 6 5 4 8 8 C 1.34772 * 119.99768 * 213.86941 * 7 6 5 9 9 O 1.21568 * 120.00258 * 5.13445 * 8 7 6 10 10 C 1.47858 * 120.00193 * 185.13771 * 8 7 6 11 11 C 1.39930 * 120.02158 * 359.72473 * 10 8 7 12 12 C 1.38328 * 120.35255 * 179.76827 * 11 10 8 13 13 C 1.37751 * 120.41386 * 0.50910 * 12 11 10 14 14 C 1.40750 * 120.04392 * 359.74430 * 13 12 11 15 15 C 1.41431 * 120.17626 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00609 * 331.72582 * 15 14 13 17 17 C 1.39944 * 120.00041 * 151.72625 * 15 14 13 18 18 N 1.30825 * 119.99639 * 349.00297 * 17 15 14 19 19 Si 1.86794 * 120.00176 * 169.00467 * 17 15 14 20 20 H 1.48500 * 109.47439 * 89.99969 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00110 * 19 17 15 22 22 H 1.48507 * 109.47272 * 329.99719 * 19 17 15 23 23 C 1.39005 * 120.02672 * 179.97438 * 10 8 7 24 24 C 1.38079 * 119.96244 * 180.02562 * 2 1 3 25 25 H 1.08992 * 109.47107 * 89.99837 * 1 2 3 26 26 H 1.08996 * 109.47159 * 210.00283 * 1 2 3 27 27 H 1.09000 * 109.46765 * 329.99613 * 1 2 3 28 28 H 1.08001 * 119.93567 * 0.02809 * 3 2 1 29 29 H 1.08002 * 119.96678 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.03773 * 179.72283 * 5 4 3 31 31 H 0.96996 * 120.00438 * 33.86847 * 7 6 5 32 32 H 1.08002 * 119.82629 * 359.97438 * 11 10 8 33 33 H 1.08007 * 119.79049 * 180.23643 * 12 11 10 34 34 H 1.08002 * 119.97891 * 179.77151 * 13 12 11 35 35 H 0.96997 * 119.99985 * 180.02562 * 18 17 15 36 36 H 1.07996 * 120.20557 * 359.96158 * 23 10 8 37 37 H 1.07998 * 120.03742 * 359.95555 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 0.0005 5 6 4.2764 0.0095 -0.0052 6 6 3.5858 -1.1954 0.0000 7 7 4.2874 -2.4052 0.0001 8 6 3.7846 -3.4757 -0.6461 9 8 2.7699 -3.3658 -1.3064 10 6 4.4673 -4.7838 -0.5521 11 6 5.6385 -4.9096 0.2032 12 6 6.2801 -6.1313 0.2998 13 6 5.7797 -7.2354 -0.3544 14 6 4.6056 -7.1270 -1.1231 15 6 4.0891 -8.2590 -1.7955 16 1 4.7545 -9.0469 -2.1162 17 6 2.7157 -8.3581 -2.0454 18 7 1.8854 -7.5223 -1.4767 19 14 2.0681 -9.6839 -3.1909 20 1 1.7618 -10.9081 -2.4081 21 1 0.8325 -9.2011 -3.8583 22 1 3.0951 -9.9965 -4.2170 23 6 3.9489 -5.8884 -1.2180 24 6 2.1967 -1.1963 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6561 2.1326 0.0005 29 1 4.1169 2.1400 0.0010 30 1 5.3563 0.0136 -0.0093 31 1 5.1358 -2.4739 0.4653 32 1 6.0420 -4.0491 0.7161 33 1 7.1815 -6.2190 0.8883 34 1 6.2884 -8.1851 -0.2772 35 1 0.9335 -7.5912 -1.6495 36 1 3.0471 -5.7952 -1.8048 37 1 1.6567 -2.1315 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042192056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = 0.382106 kcal Electronic energy + Delta-G solvation = -20511.159900 eV Core-core repulsion = 17410.410995 eV Total energy + Delta-G solvation = -3100.748904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19844 -38.47216 -37.04695 -34.62547 -33.73848 -32.28403 -30.67660 -29.53979 -28.95941 -26.85398 -25.38934 -23.60153 -21.98501 -21.22831 -20.77632 -19.57328 -17.86195 -17.01381 -16.11506 -15.95706 -15.28528 -15.03388 -14.72834 -14.25756 -13.99236 -13.66538 -13.53239 -13.22468 -12.95186 -12.75512 -12.58761 -12.25356 -12.03578 -11.69852 -11.47087 -11.18990 -11.12173 -11.06035 -10.81239 -10.54229 -10.08484 -9.99147 -9.77239 -9.30844 -9.15045 -8.56619 -7.93167 -7.66475 -7.55344 -6.79553 -4.48677 1.40160 1.53933 2.14067 2.76023 3.05902 3.08074 3.11608 3.48629 3.65367 3.89541 4.01293 4.60658 4.91216 4.96148 5.26008 5.34436 5.44455 5.51862 5.55292 5.68300 5.70161 5.83459 5.98120 6.04339 6.18421 6.20495 6.49028 6.52611 6.65604 6.67957 6.80352 6.91456 6.93427 7.16046 7.27011 7.30135 7.60477 7.65227 7.82855 7.95624 8.11202 8.44074 8.71623 8.76146 8.78466 10.14294 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004297 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.691867 B = 6515.114268 C = 7679.960699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.099 4.099 5 C -0.161 4.161 6 C 0.166 3.834 7 N -0.680 5.680 8 C 0.564 3.436 9 O -0.523 6.523 10 C -0.133 4.133 11 C -0.214 4.214 12 C -0.099 4.099 13 C -0.205 4.205 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.792 5.792 19 Si 0.914 3.086 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.083 4.083 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.410 0.590 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.284 0.716 36 H 0.138 0.862 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 11.994 3.444 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.069 4.069 3 C -0.167 4.167 4 C -0.118 4.118 5 C -0.182 4.182 6 C 0.071 3.929 7 N -0.326 5.326 8 C 0.356 3.644 9 O -0.399 6.399 10 C -0.136 4.136 11 C -0.234 4.234 12 C -0.117 4.117 13 C -0.225 4.225 14 C 0.095 3.905 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.147 4.147 18 N -0.417 5.417 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.103 4.103 24 C -0.144 4.144 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.247 0.753 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.156 0.844 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.032 12.023 2.983 12.387 hybrid contribution 0.204 -0.609 -0.140 0.657 sum 0.236 11.414 2.843 11.765 Atomic orbital electron populations 1.20777 0.91201 1.02526 1.02427 1.19789 0.96061 0.92619 0.98465 1.20910 0.94181 0.97237 1.04376 1.20834 0.94123 0.97146 0.99665 1.20873 0.99709 0.91303 1.06309 1.17826 0.91572 0.85505 0.97983 1.43679 1.25157 1.09285 1.54438 1.19023 0.84066 0.84052 0.77240 1.90721 1.24761 1.84765 1.39691 1.19395 0.97717 0.91870 1.04611 1.20367 0.98456 0.97150 1.07450 1.20447 0.98447 0.93183 0.99640 1.21178 1.01310 0.97155 1.02884 1.17615 0.90704 0.92375 0.89782 1.19592 0.92500 1.04294 1.32503 0.90081 1.25957 0.97104 0.96900 0.94760 1.69744 1.04718 1.33105 1.34107 0.86220 0.78935 0.80519 0.80554 1.19422 1.19984 1.18438 1.21729 1.00400 0.89922 0.98251 1.21140 0.92718 0.98875 1.01693 0.91094 0.91436 0.91738 0.86410 0.86055 0.85984 0.75314 0.89158 0.88697 0.88423 0.90467 0.84446 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.07 -0.97 5.88 -104.65 -0.62 -1.59 16 3 C -0.15 -1.82 9.70 -39.55 -0.38 -2.21 16 4 C -0.10 -1.18 10.04 -39.61 -0.40 -1.58 16 5 C -0.16 -2.17 9.97 -39.39 -0.39 -2.57 16 6 C 0.17 2.75 6.27 -83.71 -0.53 2.22 16 7 N -0.68 -11.79 5.28 -10.71 -0.06 -11.84 16 8 C 0.56 12.28 7.51 -12.33 -0.09 12.19 16 9 O -0.52 -12.88 14.03 5.31 0.07 -12.80 16 10 C -0.13 -3.08 5.87 -105.04 -0.62 -3.69 16 11 C -0.21 -4.39 9.55 -38.92 -0.37 -4.76 16 12 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 13 C -0.21 -4.77 9.78 -38.81 -0.38 -5.15 16 14 C 0.10 2.54 5.55 -106.87 -0.59 1.95 16 15 C -0.46 -11.91 9.06 -37.73 -0.34 -12.25 16 16 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 17 C 0.07 1.77 5.25 -17.34 -0.09 1.68 16 18 N -0.79 -20.76 10.82 55.55 0.60 -20.16 16 19 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.08 -2.17 8.20 -38.44 -0.32 -2.49 16 24 C -0.12 -2.12 8.30 -39.39 -0.33 -2.45 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.41 5.93 6.85 -40.82 -0.28 5.65 16 32 H 0.09 1.51 6.39 -52.49 -0.34 1.17 16 33 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 36 H 0.14 3.90 5.76 -52.49 -0.30 3.60 16 37 H 0.14 2.65 6.43 -52.49 -0.34 2.31 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -29.18 318.17 -9.27 -38.46 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -4.18 Total: 12.04 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -5.48 Total: -24.09 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.54 Total: -32.00 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.18 -9.27 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042192056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.837 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds