Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38305 * 119.96007 * 2 1 4 4 C 1.38265 * 120.14296 * 179.97438 * 3 2 1 5 5 C 1.38130 * 120.07171 * 0.29874 * 4 3 2 6 6 C 1.38873 * 119.92434 * 359.45383 * 5 4 3 7 7 N 1.39852 * 120.07124 * 180.27595 * 6 5 4 8 8 C 1.34772 * 119.99768 * 213.86941 * 7 6 5 9 9 O 1.21568 * 120.00258 * 5.13445 * 8 7 6 10 10 C 1.47858 * 120.00193 * 185.13771 * 8 7 6 11 11 C 1.39930 * 120.02158 * 359.72473 * 10 8 7 12 12 C 1.38328 * 120.35255 * 179.76827 * 11 10 8 13 13 C 1.37751 * 120.41386 * 0.50910 * 12 11 10 14 14 C 1.40750 * 120.04392 * 359.74430 * 13 12 11 15 15 C 1.41431 * 120.17626 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00609 * 331.72582 * 15 14 13 17 17 C 1.39944 * 120.00041 * 151.72625 * 15 14 13 18 18 N 1.30825 * 119.99639 * 349.00297 * 17 15 14 19 19 Si 1.86794 * 120.00176 * 169.00467 * 17 15 14 20 20 H 1.48500 * 109.47439 * 89.99969 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00110 * 19 17 15 22 22 H 1.48507 * 109.47272 * 329.99719 * 19 17 15 23 23 C 1.39005 * 120.02672 * 179.97438 * 10 8 7 24 24 C 1.38079 * 119.96244 * 180.02562 * 2 1 3 25 25 H 1.08992 * 109.47107 * 89.99837 * 1 2 3 26 26 H 1.08996 * 109.47159 * 210.00283 * 1 2 3 27 27 H 1.09000 * 109.46765 * 329.99613 * 1 2 3 28 28 H 1.08001 * 119.93567 * 0.02809 * 3 2 1 29 29 H 1.08002 * 119.96678 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.03773 * 179.72283 * 5 4 3 31 31 H 0.96996 * 120.00438 * 33.86847 * 7 6 5 32 32 H 1.08002 * 119.82629 * 359.97438 * 11 10 8 33 33 H 1.08007 * 119.79049 * 180.23643 * 12 11 10 34 34 H 1.08002 * 119.97891 * 179.77151 * 13 12 11 35 35 H 0.96997 * 119.99985 * 180.02562 * 18 17 15 36 36 H 1.07996 * 120.20557 * 359.96158 * 23 10 8 37 37 H 1.07998 * 120.03742 * 359.95555 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 0.0005 5 6 4.2764 0.0095 -0.0052 6 6 3.5858 -1.1954 0.0000 7 7 4.2874 -2.4052 0.0001 8 6 3.7846 -3.4757 -0.6461 9 8 2.7699 -3.3658 -1.3064 10 6 4.4673 -4.7838 -0.5521 11 6 5.6385 -4.9096 0.2032 12 6 6.2801 -6.1313 0.2998 13 6 5.7797 -7.2354 -0.3544 14 6 4.6056 -7.1270 -1.1231 15 6 4.0891 -8.2590 -1.7955 16 1 4.7545 -9.0469 -2.1162 17 6 2.7157 -8.3581 -2.0454 18 7 1.8854 -7.5223 -1.4767 19 14 2.0681 -9.6839 -3.1909 20 1 1.7618 -10.9081 -2.4081 21 1 0.8325 -9.2011 -3.8583 22 1 3.0951 -9.9965 -4.2170 23 6 3.9489 -5.8884 -1.2180 24 6 2.1967 -1.1963 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6561 2.1326 0.0005 29 1 4.1169 2.1400 0.0010 30 1 5.3563 0.0136 -0.0093 31 1 5.1358 -2.4739 0.4653 32 1 6.0420 -4.0491 0.7161 33 1 7.1815 -6.2190 0.8883 34 1 6.2884 -8.1851 -0.2772 35 1 0.9335 -7.5912 -1.6495 36 1 3.0471 -5.7952 -1.8048 37 1 1.6567 -2.1315 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042192056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -15.418667 kcal Electronic energy + Delta-G solvation = -20511.845072 eV Core-core repulsion = 17410.410995 eV Total energy + Delta-G solvation = -3101.434077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64485 -39.86084 -38.75703 -36.10653 -35.53915 -33.35875 -32.32873 -31.34357 -30.33032 -27.87597 -27.24487 -25.13320 -23.26242 -22.88599 -22.15208 -21.18859 -19.58169 -18.42152 -17.67556 -17.25175 -16.88478 -16.51290 -16.35843 -15.77680 -15.47038 -15.13241 -14.75766 -14.63244 -14.42054 -14.32313 -14.01971 -13.55513 -13.25716 -13.07148 -12.96259 -12.80356 -12.59289 -12.48383 -12.22173 -12.12113 -11.88840 -11.55825 -11.31411 -11.13397 -10.82097 -9.67002 -9.59489 -9.39842 -9.04654 -8.63836 -6.43478 0.08417 0.43901 0.56165 0.97748 1.35618 1.44760 1.50975 1.99935 2.06826 2.18582 2.74524 2.88571 3.64321 3.76637 3.99645 4.03695 4.24676 4.36947 4.41028 4.46353 4.52935 4.64359 4.76213 4.81273 4.88293 4.94619 5.04969 5.12774 5.23177 5.28459 5.39350 5.42329 5.47616 5.55852 5.70385 5.81191 5.86864 6.02455 6.12429 6.24485 6.42103 6.59225 6.85908 6.90641 7.14440 8.31737 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004297 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.691867 B = 6515.114268 C = 7679.960699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.092 4.092 5 C -0.155 4.155 6 C 0.132 3.868 7 N -0.659 5.659 8 C 0.561 3.439 9 O -0.565 6.565 10 C -0.143 4.143 11 C -0.192 4.192 12 C -0.097 4.097 13 C -0.209 4.209 14 C 0.066 3.934 15 C -0.497 4.497 16 H 0.085 0.915 17 C 0.026 3.974 18 N -0.835 5.835 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.254 1.254 23 C -0.122 4.122 24 C -0.156 4.156 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.424 0.576 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.285 0.715 36 H 0.101 0.899 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 14.617 4.553 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.158 4.158 4 C -0.110 4.110 5 C -0.175 4.175 6 C 0.038 3.962 7 N -0.306 5.306 8 C 0.352 3.648 9 O -0.444 6.444 10 C -0.146 4.146 11 C -0.212 4.212 12 C -0.114 4.114 13 C -0.228 4.228 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.103 0.897 17 C -0.187 4.187 18 N -0.461 5.461 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.177 1.177 23 C -0.143 4.143 24 C -0.177 4.177 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.171 0.829 29 H 0.181 0.819 30 H 0.168 0.832 31 H 0.264 0.736 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.159 14.680 4.131 15.402 hybrid contribution -0.330 -1.173 -0.353 1.268 sum 1.830 13.507 3.778 14.144 Atomic orbital electron populations 1.20825 0.89896 1.03422 1.02761 1.20097 0.97323 0.92436 0.98264 1.21364 0.94820 0.97545 1.02049 1.21363 0.94155 0.98125 0.97353 1.21208 1.01150 0.90355 1.04772 1.18102 0.91509 0.85983 1.00570 1.43332 1.25318 1.08686 1.53244 1.18917 0.83588 0.84792 0.77469 1.90700 1.26536 1.85432 1.41769 1.19678 0.98697 0.91840 1.04395 1.20906 0.96386 0.98896 1.05019 1.20951 0.99577 0.92089 0.98829 1.21502 1.00208 0.98932 1.02201 1.17953 0.92198 0.92394 0.91080 1.19882 0.93403 1.04964 1.34467 0.89691 1.26858 0.97027 0.99029 0.95811 1.69871 1.04890 1.35319 1.36054 0.85148 0.78137 0.77704 0.78427 1.18225 1.19883 1.17735 1.21516 1.00584 0.91649 1.00509 1.21060 0.93550 0.98611 1.04430 0.90996 0.92680 0.88707 0.82909 0.81919 0.83238 0.73637 0.84388 0.83972 0.86996 0.90476 0.88074 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 10.01 71.24 0.71 -1.84 16 2 C -0.08 -2.23 5.88 -19.88 -0.12 -2.34 16 3 C -0.14 -2.93 9.70 22.29 0.22 -2.72 16 4 C -0.09 -1.78 10.04 22.25 0.22 -1.56 16 5 C -0.15 -3.68 9.97 22.40 0.22 -3.45 16 6 C 0.13 4.30 6.27 38.18 0.24 4.54 16 7 N -0.66 -22.60 5.28 -306.07 -1.62 -24.21 16 8 C 0.56 25.41 7.51 86.79 0.65 26.06 16 9 O -0.57 -30.05 14.03 -3.93 -0.06 -30.11 16 10 C -0.14 -6.79 5.87 -20.14 -0.12 -6.91 16 11 C -0.19 -7.46 9.55 22.70 0.22 -7.25 16 12 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 13 C -0.21 -9.62 9.78 22.77 0.22 -9.40 16 14 C 0.07 3.58 5.55 -21.32 -0.12 3.46 16 15 C -0.50 -27.13 9.06 23.47 0.21 -26.92 16 16 H 0.08 4.35 7.87 -2.91 -0.02 4.32 16 17 C 0.03 1.38 5.25 85.26 0.45 1.83 16 18 N -0.83 -47.17 10.82 21.83 0.24 -46.93 16 19 Si 0.99 39.96 29.57 68.60 2.03 41.98 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 23 C -0.12 -6.82 8.20 23.01 0.19 -6.63 16 24 C -0.16 -5.55 8.30 22.39 0.19 -5.37 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.35 8.08 -2.39 -0.02 1.34 16 27 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 28 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.42 11.28 6.85 -92.71 -0.64 10.64 16 32 H 0.14 3.98 6.39 -2.91 -0.02 3.96 16 33 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16 36 H 0.10 6.33 5.76 -2.91 -0.02 6.31 16 37 H 0.10 4.13 6.43 -2.91 -0.02 4.11 16 Total: -1.00 -71.07 318.17 4.67 -66.40 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.46 Total: 34.87 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 3.61 Total: -42.00 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.38 Total: -71.14 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Total: -71.07 4.67 -66.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042192056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.981 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds