Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 119.92494 * 2 1 4 4 C 1.38111 * 120.06944 * 179.72172 * 3 2 1 5 5 C 1.38891 * 119.92891 * 0.25518 * 4 3 2 6 6 N 1.39842 * 120.07047 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99485 * 213.62203 * 6 5 4 8 8 O 1.21562 * 120.00330 * 5.13396 * 7 6 5 9 9 C 1.47855 * 119.99787 * 185.14127 * 7 6 5 10 10 C 1.39939 * 120.02640 * 359.72063 * 9 7 6 11 11 C 1.38321 * 120.35315 * 179.74115 * 10 9 7 12 12 C 1.37757 * 120.41800 * 0.51967 * 11 10 9 13 13 C 1.40755 * 120.03973 * 359.76275 * 12 11 10 14 14 C 1.41437 * 120.17515 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99678 * 331.72805 * 14 13 12 16 16 C 1.39936 * 120.00148 * 151.72797 * 14 13 12 17 17 N 1.30825 * 119.99768 * 349.00316 * 16 14 13 18 18 Si 1.86797 * 120.00183 * 168.99804 * 16 14 13 19 19 H 1.48497 * 109.47026 * 90.00211 * 18 16 14 20 20 H 1.48502 * 109.47231 * 210.00368 * 18 16 14 21 21 H 1.48501 * 109.46896 * 330.00103 * 18 16 14 22 22 C 1.39012 * 120.02561 * 180.02562 * 9 7 6 23 23 C 1.38897 * 119.85169 * 359.97438 * 5 4 3 24 24 C 1.38098 * 119.93176 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.47199 * 90.00244 * 1 2 3 26 26 H 1.09005 * 109.47183 * 210.00178 * 1 2 3 27 27 H 1.09001 * 109.47553 * 330.00284 * 1 2 3 28 28 H 1.07994 * 119.96142 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.03117 * 180.27449 * 4 3 2 30 30 H 0.96992 * 120.00265 * 33.62120 * 6 5 4 31 31 H 1.07993 * 119.81810 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.79147 * 180.24194 * 11 10 9 33 33 H 1.07999 * 119.97822 * 179.74375 * 12 11 10 34 34 H 0.97004 * 120.00076 * 180.02562 * 17 16 14 35 35 H 1.07995 * 120.20298 * 359.97438 * 22 9 7 36 36 H 1.08004 * 120.03004 * 179.97438 * 23 5 4 37 37 H 1.08009 * 119.96645 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0058 5 6 4.2740 0.0001 0.0063 6 7 5.6724 0.0002 0.0127 7 6 6.3492 -0.9703 -0.6327 8 8 5.7481 -1.7916 -1.2975 9 6 7.8228 -1.0362 -0.5320 10 6 8.5158 -0.0877 0.2285 11 6 9.8940 -0.1461 0.3317 12 6 10.6011 -1.1317 -0.3212 13 6 9.9219 -2.0909 -1.0956 14 6 10.6450 -3.1044 -1.7667 15 1 11.6621 -2.9236 -2.0817 16 6 10.0427 -4.3413 -2.0225 17 7 8.9001 -4.6411 -1.4604 18 14 10.8700 -5.5643 -3.1668 19 1 11.7710 -6.4455 -2.3815 20 1 9.8355 -6.3889 -3.8415 21 1 11.6610 -4.8305 -4.1871 22 6 8.5215 -2.0366 -1.1979 23 6 3.5779 -1.2019 0.0015 24 6 2.1970 -1.1984 -0.0043 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6550 2.1327 -0.0004 29 1 4.1160 2.1383 0.0103 30 1 6.1552 0.6986 0.4816 31 1 7.9714 0.6917 0.7406 32 1 10.4193 0.5882 0.9242 33 1 11.6774 -1.1681 -0.2391 34 1 8.4826 -5.4987 -1.6374 35 1 7.9912 -2.7680 -1.7896 36 1 4.1162 -2.1382 0.0014 37 1 1.6551 -2.1328 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042192304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = 0.405039 kcal Electronic energy + Delta-G solvation = -20376.784850 eV Core-core repulsion = 17276.036940 eV Total energy + Delta-G solvation = -3100.747910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.18809 -38.50267 -37.06487 -34.70232 -33.75098 -31.60264 -30.80968 -30.00514 -29.49706 -26.37491 -25.29478 -23.09640 -22.63879 -21.18355 -20.80467 -19.55907 -17.95478 -17.33051 -16.04070 -15.48568 -15.22207 -15.03827 -14.73110 -14.24849 -14.00632 -13.74169 -13.58016 -13.29608 -13.20311 -12.73643 -12.58369 -12.31000 -12.08359 -11.69907 -11.52495 -11.18903 -11.12164 -11.00094 -10.80980 -10.54050 -10.08183 -9.90209 -9.76863 -9.30631 -9.15857 -8.77221 -7.86390 -7.62583 -7.55146 -6.79275 -4.48385 1.38203 1.54579 2.13668 2.76218 3.06101 3.08290 3.11812 3.49663 3.65026 3.89735 4.01128 4.60908 4.89010 4.95582 5.13856 5.28091 5.45974 5.52236 5.52752 5.54818 5.73803 5.84441 5.93242 5.99060 6.16332 6.18584 6.43581 6.52627 6.66005 6.71764 6.76940 6.91320 6.93624 7.16175 7.26184 7.30313 7.60698 7.65442 7.83074 7.95889 8.11410 8.44276 8.71938 8.76345 8.78714 10.14524 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.003921 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.552897 B = 7139.753386 C = 8180.488541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.152 4.152 5 C 0.158 3.842 6 N -0.680 5.680 7 C 0.564 3.436 8 O -0.524 6.524 9 C -0.133 4.133 10 C -0.214 4.214 11 C -0.099 4.099 12 C -0.205 4.205 13 C 0.097 3.903 14 C -0.459 4.459 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.791 5.791 18 Si 0.914 3.086 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.082 4.082 23 C -0.120 4.120 24 C -0.100 4.100 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.409 0.591 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.284 0.716 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 7.819 3.436 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.121 4.121 4 C -0.172 4.172 5 C 0.063 3.937 6 N -0.325 5.325 7 C 0.356 3.644 8 O -0.400 6.400 9 C -0.136 4.136 10 C -0.234 4.234 11 C -0.117 4.117 12 C -0.225 4.225 13 C 0.095 3.905 14 C -0.488 4.488 15 H 0.099 0.901 16 C -0.148 4.148 17 N -0.416 5.416 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.119 4.119 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.247 0.753 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.885 6.989 2.972 13.273 hybrid contribution 0.658 -0.199 -0.137 0.701 sum -10.227 6.789 2.835 12.599 Atomic orbital electron populations 1.20711 0.91487 1.02315 1.01955 1.19829 0.95874 0.93207 1.02871 1.20727 0.93267 0.97382 1.00712 1.20870 0.94481 0.96449 1.05427 1.17836 0.83202 0.93933 0.98713 1.43668 1.04020 1.30549 1.54304 1.19018 0.88612 0.79463 0.77278 1.90719 1.70328 1.39432 1.39526 1.19400 0.89500 1.00148 1.04559 1.20363 0.94338 1.01313 1.07389 1.20446 0.93590 0.98052 0.99645 1.21180 0.98347 1.00175 1.02839 1.17622 0.91561 0.91545 0.89786 1.19586 1.00257 0.96440 1.32565 0.90089 1.25960 0.94594 0.99433 0.94776 1.69746 1.15116 1.22620 1.34158 0.86215 0.79636 0.79812 0.80530 1.19438 1.19985 1.18454 1.21726 0.94424 0.95858 0.98250 1.21256 0.94082 0.98082 1.00563 1.20904 0.93573 0.97484 0.99906 0.91593 0.91833 0.91925 0.86110 0.85912 0.75347 0.89164 0.88702 0.88424 0.90467 0.84461 0.84560 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.12 -1.44 5.88 -104.59 -0.62 -2.05 16 3 C -0.10 -1.23 9.69 -39.61 -0.38 -1.61 16 4 C -0.15 -2.03 9.96 -39.39 -0.39 -2.43 16 5 C 0.16 2.60 6.27 -83.72 -0.53 2.07 16 6 N -0.68 -11.74 5.28 -10.71 -0.06 -11.80 16 7 C 0.56 12.27 7.51 -12.32 -0.09 12.17 16 8 O -0.52 -12.89 14.03 5.31 0.07 -12.81 16 9 C -0.13 -3.08 5.87 -105.04 -0.62 -3.69 16 10 C -0.21 -4.38 9.55 -38.91 -0.37 -4.75 16 11 C -0.10 -2.06 10.01 -39.73 -0.40 -2.45 16 12 C -0.21 -4.77 9.78 -38.81 -0.38 -5.15 16 13 C 0.10 2.53 5.55 -106.87 -0.59 1.94 16 14 C -0.46 -11.89 9.06 -37.73 -0.34 -12.24 16 15 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 16 C 0.07 1.76 5.25 -17.34 -0.09 1.67 16 17 N -0.79 -20.75 10.82 55.55 0.60 -20.15 16 18 Si 0.91 18.65 29.57 -169.99 -5.03 13.62 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.08 -2.16 8.20 -38.44 -0.32 -2.48 16 23 C -0.12 -2.03 8.65 -39.39 -0.34 -2.37 16 24 C -0.10 -1.41 9.69 -39.61 -0.38 -1.79 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.41 5.91 6.85 -40.82 -0.28 5.63 16 31 H 0.09 1.50 6.39 -52.49 -0.34 1.17 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 35 H 0.14 3.90 5.77 -52.49 -0.30 3.60 16 36 H 0.14 2.62 6.43 -52.48 -0.34 2.28 16 37 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -29.16 318.18 -9.27 -38.44 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.18 Total: 11.68 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -5.48 Total: -23.77 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.54 Total: -31.95 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.16 -9.27 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042192304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.843 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds