Wall clock time and date at job start Tue Mar 31 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 119.92494 * 2 1 4 4 C 1.38111 * 120.06944 * 179.72172 * 3 2 1 5 5 C 1.38891 * 119.92891 * 0.25518 * 4 3 2 6 6 N 1.39842 * 120.07047 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99485 * 213.62203 * 6 5 4 8 8 O 1.21562 * 120.00330 * 5.13396 * 7 6 5 9 9 C 1.47855 * 119.99787 * 185.14127 * 7 6 5 10 10 C 1.39939 * 120.02640 * 359.72063 * 9 7 6 11 11 C 1.38321 * 120.35315 * 179.74115 * 10 9 7 12 12 C 1.37757 * 120.41800 * 0.51967 * 11 10 9 13 13 C 1.40755 * 120.03973 * 359.76275 * 12 11 10 14 14 C 1.41437 * 120.17515 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99678 * 331.72805 * 14 13 12 16 16 C 1.39936 * 120.00148 * 151.72797 * 14 13 12 17 17 N 1.30825 * 119.99768 * 349.00316 * 16 14 13 18 18 Si 1.86797 * 120.00183 * 168.99804 * 16 14 13 19 19 H 1.48497 * 109.47026 * 90.00211 * 18 16 14 20 20 H 1.48502 * 109.47231 * 210.00368 * 18 16 14 21 21 H 1.48501 * 109.46896 * 330.00103 * 18 16 14 22 22 C 1.39012 * 120.02561 * 180.02562 * 9 7 6 23 23 C 1.38897 * 119.85169 * 359.97438 * 5 4 3 24 24 C 1.38098 * 119.93176 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.47199 * 90.00244 * 1 2 3 26 26 H 1.09005 * 109.47183 * 210.00178 * 1 2 3 27 27 H 1.09001 * 109.47553 * 330.00284 * 1 2 3 28 28 H 1.07994 * 119.96142 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.03117 * 180.27449 * 4 3 2 30 30 H 0.96992 * 120.00265 * 33.62120 * 6 5 4 31 31 H 1.07993 * 119.81810 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.79147 * 180.24194 * 11 10 9 33 33 H 1.07999 * 119.97822 * 179.74375 * 12 11 10 34 34 H 0.97004 * 120.00076 * 180.02562 * 17 16 14 35 35 H 1.07995 * 120.20298 * 359.97438 * 22 9 7 36 36 H 1.08004 * 120.03004 * 179.97438 * 23 5 4 37 37 H 1.08009 * 119.96645 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0058 5 6 4.2740 0.0001 0.0063 6 7 5.6724 0.0002 0.0127 7 6 6.3492 -0.9703 -0.6327 8 8 5.7481 -1.7916 -1.2975 9 6 7.8228 -1.0362 -0.5320 10 6 8.5158 -0.0877 0.2285 11 6 9.8940 -0.1461 0.3317 12 6 10.6011 -1.1317 -0.3212 13 6 9.9219 -2.0909 -1.0956 14 6 10.6450 -3.1044 -1.7667 15 1 11.6621 -2.9236 -2.0817 16 6 10.0427 -4.3413 -2.0225 17 7 8.9001 -4.6411 -1.4604 18 14 10.8700 -5.5643 -3.1668 19 1 11.7710 -6.4455 -2.3815 20 1 9.8355 -6.3889 -3.8415 21 1 11.6610 -4.8305 -4.1871 22 6 8.5215 -2.0366 -1.1979 23 6 3.5779 -1.2019 0.0015 24 6 2.1970 -1.1984 -0.0043 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6550 2.1327 -0.0004 29 1 4.1160 2.1383 0.0103 30 1 6.1552 0.6986 0.4816 31 1 7.9714 0.6917 0.7406 32 1 10.4193 0.5882 0.9242 33 1 11.6774 -1.1681 -0.2391 34 1 8.4826 -5.4987 -1.6374 35 1 7.9912 -2.7680 -1.7896 36 1 4.1162 -2.1382 0.0014 37 1 1.6551 -2.1328 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042192304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:25 Heat of formation + Delta-G solvation = -15.325607 kcal Electronic energy + Delta-G solvation = -20377.466982 eV Core-core repulsion = 17276.036940 eV Total energy + Delta-G solvation = -3101.430042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63498 -39.87543 -38.77224 -36.15313 -35.55404 -32.91053 -31.89487 -31.60984 -31.28090 -27.62211 -26.99834 -24.58725 -23.83828 -22.88055 -22.14163 -21.15357 -19.62912 -18.78207 -17.72341 -17.07574 -16.57250 -16.43747 -16.27741 -15.82750 -15.40439 -15.11654 -14.83624 -14.56262 -14.43711 -14.35890 -14.25241 -13.55633 -13.24799 -12.96426 -12.93425 -12.80136 -12.58868 -12.52758 -12.22019 -12.05255 -11.88187 -11.55296 -11.23205 -11.13035 -10.80654 -9.88560 -9.58601 -9.39435 -8.93099 -8.63415 -6.42967 0.07318 0.45021 0.53517 0.98088 1.35815 1.44999 1.51185 1.99901 2.07619 2.18795 2.74331 2.87452 3.64734 3.79979 3.99841 4.03607 4.12283 4.35913 4.45200 4.49982 4.52743 4.62609 4.85439 4.87029 4.90452 5.05230 5.09158 5.13394 5.16726 5.28562 5.37995 5.41500 5.47845 5.56650 5.69559 5.81525 5.87150 6.02823 6.10761 6.24871 6.42575 6.59645 6.86277 6.90972 7.15031 8.32009 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.003921 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.552897 B = 7139.753386 C = 8180.488541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C -0.099 4.099 4 C -0.141 4.141 5 C 0.123 3.877 6 N -0.659 5.659 7 C 0.561 3.439 8 O -0.566 6.566 9 C -0.143 4.143 10 C -0.192 4.192 11 C -0.097 4.097 12 C -0.209 4.209 13 C 0.065 3.935 14 C -0.496 4.496 15 H 0.085 0.915 16 C 0.025 3.975 17 N -0.834 5.834 18 Si 0.986 3.014 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.121 4.121 23 C -0.148 4.148 24 C -0.112 4.112 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.424 0.576 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.285 0.715 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 11.022 4.544 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.117 4.117 4 C -0.161 4.161 5 C 0.029 3.971 6 N -0.305 5.305 7 C 0.352 3.648 8 O -0.445 6.445 9 C -0.146 4.146 10 C -0.211 4.211 11 C -0.115 4.115 12 C -0.229 4.229 13 C 0.063 3.937 14 C -0.526 4.526 15 H 0.103 0.897 16 C -0.188 4.188 17 N -0.461 5.461 18 Si 0.807 3.193 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.142 4.142 23 C -0.168 4.168 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.178 0.822 29 H 0.170 0.830 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.033 10.248 4.118 16.333 hybrid contribution 0.837 -0.973 -0.349 1.330 sum -11.196 9.275 3.770 15.020 Atomic orbital electron populations 1.20796 0.88692 1.03868 1.03018 1.20292 0.97893 0.92475 1.00307 1.21232 0.92835 0.98814 0.98806 1.21199 0.95289 0.96083 1.03576 1.18076 0.82486 0.95015 1.01493 1.43310 1.04713 1.29370 1.53105 1.18910 0.88301 0.80045 0.77502 1.90697 1.70890 1.41327 1.41620 1.19682 0.90578 1.00007 1.04353 1.20903 0.94720 1.00586 1.04939 1.20951 0.93786 0.97887 0.98858 1.21504 0.99323 0.99882 1.02157 1.17966 0.91806 0.92845 0.91106 1.19868 1.00782 0.97452 1.34520 0.89716 1.26864 0.94994 1.01124 0.95842 1.69872 1.16910 1.23193 1.36091 0.85139 0.78540 0.77271 0.78397 1.18263 1.19885 1.17768 1.21507 0.94965 0.97223 1.00466 1.21151 0.95517 0.97166 1.02990 1.21102 0.92493 0.99278 1.00187 0.90602 0.91123 0.89662 0.82188 0.83035 0.73643 0.84369 0.83985 0.87013 0.90488 0.88101 0.88423 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.23 0.71 -0.80 16 2 C -0.11 -2.38 5.88 -19.84 -0.12 -2.49 16 3 C -0.10 -1.97 9.69 22.25 0.22 -1.76 16 4 C -0.14 -3.36 9.96 22.40 0.22 -3.13 16 5 C 0.12 3.98 6.27 38.18 0.24 4.22 16 6 N -0.66 -22.42 5.28 -306.08 -1.62 -24.04 16 7 C 0.56 25.33 7.51 86.79 0.65 25.98 16 8 O -0.57 -30.03 14.03 -3.91 -0.05 -30.08 16 9 C -0.14 -6.78 5.87 -20.13 -0.12 -6.90 16 10 C -0.19 -7.42 9.55 22.70 0.22 -7.20 16 11 C -0.10 -3.75 10.01 22.18 0.22 -3.53 16 12 C -0.21 -9.62 9.78 22.77 0.22 -9.40 16 13 C 0.06 3.52 5.55 -21.32 -0.12 3.41 16 14 C -0.50 -27.06 9.06 23.47 0.21 -26.85 16 15 H 0.08 4.33 7.87 -2.91 -0.02 4.31 16 16 C 0.03 1.33 5.25 85.25 0.45 1.78 16 17 N -0.83 -47.09 10.82 21.82 0.24 -46.86 16 18 Si 0.99 39.99 29.57 68.60 2.03 42.02 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 22 C -0.12 -6.75 8.20 23.01 0.19 -6.56 16 23 C -0.15 -5.24 8.65 22.39 0.19 -5.04 16 24 C -0.11 -3.13 9.69 22.25 0.22 -2.91 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.92 8.09 -2.38 -0.02 0.91 16 27 H 0.08 0.86 8.08 -2.39 -0.02 0.85 16 28 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.42 11.17 6.85 -92.71 -0.64 10.54 16 31 H 0.14 3.96 6.39 -2.91 -0.02 3.94 16 32 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 34 H 0.28 14.88 8.30 -92.71 -0.77 14.11 16 35 H 0.10 6.30 5.77 -2.91 -0.02 6.29 16 36 H 0.10 4.16 6.43 -2.91 -0.02 4.14 16 37 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -70.66 318.18 4.67 -65.99 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.46 Total: 34.16 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.61 Total: -41.20 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.38 Total: -70.89 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -70.66 4.67 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042192304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.667 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds