Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53002 * 109.46561 * 119.99448 * 2 1 3 5 5 N 1.46505 * 109.47008 * 174.11299 * 4 2 1 6 6 C 1.46503 * 119.99770 * 276.68429 * 5 4 2 7 7 C 1.50698 * 109.47361 * 269.99741 * 6 5 4 8 8 H 1.07998 * 119.99838 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99980 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99585 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47194 * 90.00557 * 11 9 7 13 13 H 1.48507 * 109.46704 * 210.00042 * 11 9 7 14 14 H 1.48493 * 109.47236 * 330.00029 * 11 9 7 15 15 C 1.34770 * 120.00562 * 96.68460 * 5 4 2 16 16 O 1.21279 * 120.00312 * 185.40694 * 15 5 4 17 17 C 1.50706 * 119.99734 * 5.40305 * 15 5 4 18 18 C 1.50694 * 109.47119 * 174.69972 * 17 15 5 19 19 C 1.33385 * 125.20558 * 90.00103 * 18 17 15 20 20 C 1.38424 * 114.92572 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91668 * 0.02562 * 20 19 18 22 22 S 1.75882 * 109.59648 * 359.76025 * 21 20 19 23 23 H 1.08999 * 109.47565 * 300.00809 * 1 2 3 24 24 H 1.08995 * 109.47049 * 60.00528 * 1 2 3 25 25 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47565 * 239.99191 * 2 1 3 27 27 H 1.09001 * 109.46770 * 304.70214 * 3 2 1 28 28 H 1.09000 * 109.47253 * 64.69854 * 3 2 1 29 29 H 1.09001 * 109.47011 * 184.70807 * 3 2 1 30 30 H 1.08997 * 109.47569 * 54.11111 * 4 2 1 31 31 H 1.09002 * 109.47413 * 294.10518 * 4 2 1 32 32 H 1.09004 * 109.46763 * 30.00300 * 6 5 4 33 33 H 1.09003 * 109.47081 * 149.99529 * 6 5 4 34 34 H 0.97000 * 119.99954 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47379 * 294.69904 * 17 15 5 36 36 H 1.09004 * 109.46745 * 54.70082 * 17 15 5 37 37 H 1.08002 * 122.54121 * 359.95830 * 19 18 17 38 38 H 1.07996 * 122.54512 * 180.02562 * 20 19 18 39 39 H 1.08003 * 125.19917 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 7 3.4980 -0.8451 1.1807 6 6 4.1050 -1.9449 0.4267 7 6 4.2994 -3.1305 1.3364 8 1 4.0003 -3.0710 2.3724 9 6 4.8580 -4.2916 0.8457 10 7 5.2217 -4.3642 -0.4161 11 14 5.0983 -5.7614 1.9732 12 1 3.8877 -6.6204 1.9315 13 1 6.2765 -6.5445 1.5213 14 1 5.3220 -5.2881 3.3627 15 6 4.2811 0.0524 1.8112 16 8 5.4854 0.0083 1.6745 17 6 3.6603 1.1109 2.6860 18 6 4.7478 1.8977 3.3711 19 6 5.3215 2.9999 2.8862 20 6 6.2998 3.5524 3.6948 21 6 6.5208 2.8986 4.8362 22 16 5.4502 1.5067 4.9355 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6095 1.9800 -0.8449 28 1 1.7470 1.9315 0.9291 29 1 3.1267 1.4436 -0.0844 30 1 1.5930 -1.7138 1.3038 31 1 1.7652 -0.1500 2.1362 32 1 3.4504 -2.2238 -0.3991 33 1 5.0704 -1.6264 0.0335 34 1 5.6151 -5.1810 -0.7612 35 1 3.0579 1.7815 2.0732 36 1 3.0272 0.6369 3.4361 37 1 5.0440 3.4287 1.9345 38 1 6.8428 4.4452 3.4222 39 1 7.2435 3.1831 5.5867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = -14.082099 kcal Electronic energy + Delta-G solvation = -20166.866187 eV Core-core repulsion = 17200.934020 eV Total energy + Delta-G solvation = -2965.932168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40534 -37.48960 -36.24161 -33.70516 -32.33491 -31.81958 -28.03911 -27.10652 -26.55857 -25.40053 -23.47406 -22.26828 -20.22618 -19.16562 -18.38279 -16.83840 -16.54047 -16.43204 -15.51172 -15.07047 -14.85236 -14.49016 -14.10727 -13.46813 -13.38031 -12.77687 -12.74875 -12.55308 -12.28039 -12.27731 -12.04316 -11.92328 -11.69868 -11.33550 -11.19301 -10.91469 -10.89067 -10.74241 -10.54955 -10.51961 -10.37330 -10.11770 -9.60035 -9.00578 -8.42821 -8.37667 -8.24027 -7.61338 -6.03318 -4.08044 1.19504 1.84783 2.21392 2.93770 3.30296 3.36924 3.39695 3.45342 3.99286 4.45842 4.88310 5.04041 5.10058 5.12976 5.19032 5.30681 5.33092 5.44532 5.53620 5.62828 5.70687 5.73606 5.77506 5.86177 5.96420 6.06327 6.17734 6.26107 6.28910 6.44424 6.46000 6.55512 6.67226 7.08945 7.47649 7.56921 7.93548 8.25037 8.43883 8.91357 9.11509 9.57158 11.04650 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.006195 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.904411 B = 4519.042624 C = 6094.455004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.150 4.150 4 C 0.114 3.886 5 N -0.596 5.596 6 C 0.247 3.753 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.510 3.490 16 O -0.531 6.531 17 C -0.085 4.085 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.224 4.224 22 S 0.103 5.897 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 14.507 6.113 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.207 4.207 4 C -0.011 4.011 5 N -0.327 5.327 6 C 0.128 3.872 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.295 3.705 16 O -0.408 6.408 17 C -0.127 4.127 18 C -0.258 4.258 19 C -0.167 4.167 20 C -0.161 4.161 21 C -0.359 4.359 22 S 0.367 5.633 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.760 13.196 6.975 16.385 hybrid contribution 0.424 0.137 -0.511 0.678 sum -6.336 13.333 6.464 16.115 Atomic orbital electron populations 1.21760 0.95008 1.01871 1.01375 1.21563 0.95419 0.96453 1.00210 1.21980 1.01547 0.96089 1.01045 1.21567 0.81816 1.01153 0.96524 1.48171 1.05175 1.28011 1.51394 1.19250 0.94496 0.82483 0.90969 1.21437 1.41112 0.97266 0.96704 0.92531 1.24924 0.95240 0.98721 0.95157 1.69933 1.42068 1.27826 1.13497 0.86525 0.77694 0.82363 0.81034 1.20632 1.21085 1.19884 1.20050 0.87353 0.82125 0.80952 1.90690 1.14351 1.73014 1.62734 1.20559 0.95823 0.97251 0.99036 1.23907 1.03471 0.99659 0.98733 1.19995 0.98464 0.97097 1.01189 1.20069 0.99760 1.01827 0.94462 1.25517 1.06574 1.00421 1.03433 1.84247 1.33480 1.28020 1.17554 0.92874 0.92832 0.92425 0.90353 0.92852 0.92796 0.92441 0.90135 0.91542 0.95049 0.93833 0.92745 0.87051 0.88660 0.84684 0.84667 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.12 -1.58 3.11 -90.62 -0.28 -1.86 16 3 C -0.15 -1.83 7.59 37.16 0.28 -1.55 16 4 C 0.11 1.79 4.89 -4.04 -0.02 1.77 16 5 N -0.60 -12.38 2.26 -175.05 -0.40 -12.78 16 6 C 0.25 6.44 5.22 -5.19 -0.03 6.41 16 7 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 11 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.51 10.58 6.44 -10.99 -0.07 10.51 16 16 O -0.53 -13.55 15.60 5.56 0.09 -13.47 16 17 C -0.08 -1.30 4.55 -29.03 -0.13 -1.44 16 18 C -0.14 -2.20 5.01 -36.01 -0.18 -2.38 16 19 C -0.14 -2.00 10.05 -41.21 -0.41 -2.41 16 20 C -0.13 -1.70 10.18 -41.21 -0.42 -2.12 16 21 C -0.22 -2.90 11.23 29.04 0.33 -2.58 16 22 S 0.10 1.54 23.33 -107.50 -2.51 -0.97 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.56 6.49 -51.93 -0.34 0.23 16 29 H 0.06 0.84 6.87 -51.93 -0.36 0.48 16 30 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 31 H 0.07 0.87 6.10 -51.93 -0.32 0.55 16 32 H 0.03 0.83 7.94 -51.93 -0.41 0.41 16 33 H 0.04 1.29 7.35 -51.93 -0.38 0.91 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.11 1.41 4.80 -51.93 -0.25 1.16 16 36 H 0.10 1.30 7.37 -51.93 -0.38 0.92 16 37 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.16 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -33.15 333.54 -8.87 -42.02 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.78 Total: -0.44 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.02 Total: -10.40 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.34 Total: -38.74 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.51 Total: -0.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.15 -8.87 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.942 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds