Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53002 * 109.46561 * 119.99448 * 2 1 3 5 5 N 1.46505 * 109.47008 * 174.11299 * 4 2 1 6 6 C 1.46503 * 119.99770 * 276.68429 * 5 4 2 7 7 C 1.50698 * 109.47361 * 269.99741 * 6 5 4 8 8 H 1.07998 * 119.99838 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99980 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99585 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47194 * 90.00557 * 11 9 7 13 13 H 1.48507 * 109.46704 * 210.00042 * 11 9 7 14 14 H 1.48493 * 109.47236 * 330.00029 * 11 9 7 15 15 C 1.34770 * 120.00562 * 96.68460 * 5 4 2 16 16 O 1.21279 * 120.00312 * 185.40694 * 15 5 4 17 17 C 1.50706 * 119.99734 * 5.40305 * 15 5 4 18 18 C 1.50694 * 109.47119 * 174.69972 * 17 15 5 19 19 C 1.33385 * 125.20558 * 90.00103 * 18 17 15 20 20 C 1.38424 * 114.92572 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91668 * 0.02562 * 20 19 18 22 22 S 1.75882 * 109.59648 * 359.76025 * 21 20 19 23 23 H 1.08999 * 109.47565 * 300.00809 * 1 2 3 24 24 H 1.08995 * 109.47049 * 60.00528 * 1 2 3 25 25 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47565 * 239.99191 * 2 1 3 27 27 H 1.09001 * 109.46770 * 304.70214 * 3 2 1 28 28 H 1.09000 * 109.47253 * 64.69854 * 3 2 1 29 29 H 1.09001 * 109.47011 * 184.70807 * 3 2 1 30 30 H 1.08997 * 109.47569 * 54.11111 * 4 2 1 31 31 H 1.09002 * 109.47413 * 294.10518 * 4 2 1 32 32 H 1.09004 * 109.46763 * 30.00300 * 6 5 4 33 33 H 1.09003 * 109.47081 * 149.99529 * 6 5 4 34 34 H 0.97000 * 119.99954 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47379 * 294.69904 * 17 15 5 36 36 H 1.09004 * 109.46745 * 54.70082 * 17 15 5 37 37 H 1.08002 * 122.54121 * 359.95830 * 19 18 17 38 38 H 1.07996 * 122.54512 * 180.02562 * 20 19 18 39 39 H 1.08003 * 125.19917 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 7 3.4980 -0.8451 1.1807 6 6 4.1050 -1.9449 0.4267 7 6 4.2994 -3.1305 1.3364 8 1 4.0003 -3.0710 2.3724 9 6 4.8580 -4.2916 0.8457 10 7 5.2217 -4.3642 -0.4161 11 14 5.0983 -5.7614 1.9732 12 1 3.8877 -6.6204 1.9315 13 1 6.2765 -6.5445 1.5213 14 1 5.3220 -5.2881 3.3627 15 6 4.2811 0.0524 1.8112 16 8 5.4854 0.0083 1.6745 17 6 3.6603 1.1109 2.6860 18 6 4.7478 1.8977 3.3711 19 6 5.3215 2.9999 2.8862 20 6 6.2998 3.5524 3.6948 21 6 6.5208 2.8986 4.8362 22 16 5.4502 1.5067 4.9355 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6095 1.9800 -0.8449 28 1 1.7470 1.9315 0.9291 29 1 3.1267 1.4436 -0.0844 30 1 1.5930 -1.7138 1.3038 31 1 1.7652 -0.1500 2.1362 32 1 3.4504 -2.2238 -0.3991 33 1 5.0704 -1.6264 0.0335 34 1 5.6151 -5.1810 -0.7612 35 1 3.0579 1.7815 2.0732 36 1 3.0272 0.6369 3.4361 37 1 5.0440 3.4287 1.9345 38 1 6.8428 4.4452 3.4222 39 1 7.2435 3.1831 5.5867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = -33.444291 kcal Electronic energy + Delta-G solvation = -20167.705795 eV Core-core repulsion = 17200.934020 eV Total energy + Delta-G solvation = -2966.771775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97313 -38.60316 -37.65815 -35.51788 -34.11913 -33.15894 -29.79605 -28.26674 -27.72005 -26.84449 -25.09438 -23.77038 -21.41569 -20.33503 -19.82103 -18.58887 -18.14075 -17.95848 -17.03937 -16.61982 -16.17307 -15.98549 -15.55431 -14.74172 -14.62188 -14.46958 -13.91611 -13.81628 -13.75409 -13.50035 -13.36504 -13.20819 -12.96623 -12.81271 -12.77390 -12.52752 -12.40180 -12.23402 -12.05026 -11.81634 -11.64408 -11.62600 -11.47034 -10.67200 -10.65115 -9.54027 -9.38874 -9.34229 -8.23280 -6.38381 0.09770 0.76429 1.14284 1.34516 1.37684 1.47867 1.80864 1.88203 2.32381 2.49591 3.06026 3.65837 3.83698 3.94991 4.06347 4.17633 4.26880 4.29606 4.41931 4.52915 4.70280 4.74187 4.76627 4.84166 4.93930 5.03962 5.06947 5.08823 5.22664 5.24304 5.30718 5.40570 5.42899 5.51735 5.58368 5.63243 5.86232 6.06035 6.69428 6.80351 7.27488 7.49020 8.83656 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.006195 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.904411 B = 4519.042624 C = 6094.455004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.107 3.893 5 N -0.599 5.599 6 C 0.265 3.735 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.966 3.034 12 H -0.262 1.262 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.503 3.497 16 O -0.590 6.590 17 C -0.069 4.069 18 C -0.170 4.170 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.213 4.213 22 S 0.067 5.933 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.019 0.981 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 15.869 7.688 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.203 4.203 4 C -0.015 4.015 5 N -0.330 5.330 6 C 0.144 3.856 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.207 1.207 14 H -0.198 1.198 15 C 0.291 3.709 16 O -0.470 6.470 17 C -0.110 4.110 18 C -0.287 4.287 19 C -0.168 4.168 20 C -0.170 4.170 21 C -0.348 4.348 22 S 0.331 5.669 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.037 0.963 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.166 0.834 38 H 0.183 0.817 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.275 14.577 8.556 18.819 hybrid contribution 0.921 -0.220 -1.046 1.411 sum -7.354 14.356 7.510 17.793 Atomic orbital electron populations 1.21710 0.92125 1.02241 1.03192 1.21504 0.97672 0.96678 0.97454 1.21955 0.99623 0.95419 1.03294 1.21910 0.78489 1.01703 0.99394 1.48148 1.07467 1.26721 1.50634 1.18642 0.92288 0.83702 0.91002 1.21710 1.41381 0.98296 0.96724 0.92871 1.25853 0.94696 1.01840 0.96704 1.70057 1.42634 1.28821 1.15298 0.85442 0.78293 0.78644 0.78622 1.18652 1.20650 1.19769 1.21023 0.86743 0.82548 0.80541 1.90649 1.17030 1.74683 1.64662 1.20492 0.95984 0.95863 0.98630 1.24022 1.04723 1.00576 0.99404 1.20362 0.98136 0.96686 1.01631 1.20415 0.99588 1.02817 0.94163 1.25899 1.06032 0.98835 1.04080 1.84310 1.34872 1.29865 1.17886 0.90494 0.91551 0.92858 0.93667 0.91117 0.90065 0.95386 0.91255 0.87808 0.96259 0.98739 0.92434 0.84058 0.86615 0.83444 0.81741 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.19 71.98 0.66 -1.86 16 2 C -0.11 -2.96 3.11 -10.79 -0.03 -2.99 16 3 C -0.15 -3.29 7.59 71.98 0.55 -2.74 16 4 C 0.11 3.31 4.89 86.38 0.42 3.73 16 5 N -0.60 -25.62 2.26 -826.13 -1.87 -27.49 16 6 C 0.27 14.62 5.22 85.63 0.45 15.07 16 7 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.47 5.46 84.65 0.46 0.93 16 10 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 11 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 15 C 0.50 21.26 6.44 87.66 0.56 21.82 16 16 O -0.59 -31.42 15.60 -3.03 -0.05 -31.47 16 17 C -0.07 -2.01 4.55 29.10 0.13 -1.88 16 18 C -0.17 -5.15 5.01 24.59 0.12 -5.03 16 19 C -0.14 -3.77 10.05 21.22 0.21 -3.56 16 20 C -0.14 -3.32 10.18 21.22 0.22 -3.10 16 21 C -0.21 -5.08 11.23 66.72 0.75 -4.33 16 22 S 0.07 1.95 23.33 -56.49 -1.32 0.63 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 1.47 8.01 -2.39 -0.02 1.45 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.38 6.49 -2.39 -0.02 1.36 16 29 H 0.03 0.79 6.87 -2.39 -0.02 0.77 16 30 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 31 H 0.10 2.41 6.10 -2.39 -0.01 2.40 16 32 H 0.02 1.09 7.94 -2.38 -0.02 1.07 16 33 H -0.01 -0.35 7.35 -2.39 -0.02 -0.37 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.14 3.18 4.80 -2.39 -0.01 3.17 16 36 H 0.12 2.89 7.37 -2.38 -0.02 2.87 16 37 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 38 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -76.31 333.54 4.85 -71.46 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.03 Total: 11.62 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.74 Total: -15.51 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.58 Total: -84.36 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.05 Total: -31.47 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -76.31 4.85 -71.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.017 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds