Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47329 * 2 1 4 4 C 1.33821 * 124.51920 * 89.99914 * 3 2 1 5 5 C 1.37473 * 115.09755 * 180.02562 * 4 3 2 6 6 C 1.36646 * 113.29848 * 359.97438 * 5 4 3 7 7 C 1.46589 * 125.45998 * 179.97438 * 6 5 4 8 8 O 1.21695 * 119.99499 * 6.59538 * 7 6 5 9 9 N 1.34776 * 119.99944 * 186.59039 * 7 6 5 10 10 C 1.46496 * 120.00057 * 5.55846 * 9 7 6 11 11 C 1.50702 * 109.47406 * 274.16484 * 10 9 7 12 12 H 1.07994 * 119.99622 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99984 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00052 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99806 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46804 * 60.00298 * 15 13 11 17 17 H 1.48500 * 109.47218 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47201 * 300.00566 * 15 13 11 19 19 C 1.46494 * 119.99865 * 185.55753 * 9 7 6 20 20 C 1.53005 * 109.47196 * 297.37620 * 19 9 7 21 21 C 1.52998 * 109.47140 * 57.37618 * 19 9 7 22 22 S 1.70614 * 124.52187 * 270.27248 * 3 2 1 23 23 H 1.09003 * 109.46970 * 300.00089 * 1 2 3 24 24 H 1.09000 * 109.47129 * 59.99935 * 1 2 3 25 25 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47277 * 240.00121 * 2 1 3 27 27 H 1.09000 * 109.47129 * 120.00065 * 2 1 3 28 28 H 1.07995 * 122.45099 * 359.97438 * 4 3 2 29 29 H 1.07996 * 123.35356 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47216 * 34.16800 * 10 9 7 31 31 H 1.09010 * 109.47093 * 154.16342 * 10 9 7 32 32 H 0.97006 * 119.99704 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47067 * 177.37567 * 19 9 7 34 34 H 1.09002 * 109.46861 * 57.19904 * 20 19 9 35 35 H 1.08998 * 109.46698 * 177.19319 * 20 19 9 36 36 H 1.08999 * 109.46836 * 297.19474 * 20 19 9 37 37 H 1.09000 * 109.47338 * 64.42470 * 21 19 9 38 38 H 1.09003 * 109.47255 * 184.42476 * 21 19 9 39 39 H 1.09001 * 109.47327 * 304.42732 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7367 3.4146 0.8776 6 6 2.8461 3.7235 -0.4490 7 6 3.2995 5.0090 -0.9882 8 8 3.7297 5.8656 -0.2384 9 7 3.2401 5.2421 -2.3144 10 6 2.6113 4.2618 -3.2030 11 6 3.6244 3.2178 -3.5964 12 1 4.6354 3.2782 -3.2216 13 6 3.2601 2.1849 -4.4339 14 7 2.0288 2.1110 -4.8899 15 14 4.5161 0.8911 -4.9221 16 1 5.0192 0.2055 -3.7047 17 1 3.8783 -0.1033 -5.8218 18 1 5.6492 1.5425 -5.6273 19 6 3.8044 6.4759 -2.8671 20 6 3.0530 7.6806 -2.2970 21 6 5.2842 6.5732 -2.4910 22 16 2.3484 2.3347 -1.4057 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1439 1.7376 2.0965 29 1 2.9815 4.1060 1.6703 30 1 1.7791 3.7840 -2.6859 31 1 2.2427 4.7654 -4.0967 32 1 1.7727 1.3845 -5.4795 33 1 3.7053 6.4663 -3.9526 34 1 3.1102 7.6626 -1.2087 35 1 3.5048 8.6000 -2.6695 36 1 2.0089 7.6373 -2.6068 37 1 5.8333 5.7580 -2.9623 38 1 5.6845 7.5271 -2.8344 39 1 5.3893 6.5036 -1.4083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043640012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = -29.705001 kcal Electronic energy + Delta-G solvation = -20712.629109 eV Core-core repulsion = 17746.019481 eV Total energy + Delta-G solvation = -2966.609628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98546 -38.70229 -36.94712 -35.30015 -34.46413 -33.22359 -29.41421 -28.96244 -28.03277 -26.09214 -24.86462 -23.58699 -22.90497 -20.92201 -19.18992 -18.74235 -18.23964 -17.19222 -16.60935 -16.32446 -15.94112 -15.85386 -15.05753 -14.78901 -14.49562 -14.44268 -14.11815 -14.08471 -14.00455 -13.59049 -13.35329 -12.96583 -12.88343 -12.76132 -12.70357 -12.52644 -12.24307 -12.18825 -12.14035 -11.90704 -11.80607 -11.71259 -10.80041 -10.58216 -10.44935 -9.62543 -9.24312 -9.08131 -8.23043 -6.29138 -0.13922 1.03942 1.39957 1.45567 1.50656 1.57176 1.64523 2.25474 2.40886 2.45750 3.09422 3.78043 3.96740 4.18793 4.24441 4.26447 4.38682 4.48086 4.56039 4.65732 4.68294 4.80073 4.90883 4.92863 4.95136 4.99508 5.01547 5.06625 5.10120 5.25307 5.36013 5.37239 5.41348 5.49846 5.65404 5.75824 5.91418 5.92749 6.51046 6.76596 7.26717 7.37207 8.80067 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.009581 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.595390 B = 2921.730061 C = 4523.592917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.282 4.282 4 C -0.172 4.172 5 C -0.075 4.075 6 C -0.329 4.329 7 C 0.585 3.415 8 O -0.579 6.579 9 N -0.596 5.596 10 C 0.233 3.767 11 C -0.535 4.535 12 H 0.054 0.946 13 C 0.052 3.948 14 N -0.894 5.894 15 Si 0.930 3.070 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.273 1.273 19 C 0.139 3.861 20 C -0.157 4.157 21 C -0.156 4.156 22 S 0.356 5.644 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.273 0.727 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -1.073 4.931 5.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.402 4.402 4 C -0.202 4.202 5 C -0.110 4.110 6 C -0.450 4.450 7 C 0.375 3.625 8 O -0.464 6.464 9 N -0.326 5.326 10 C 0.110 3.890 11 C -0.577 4.577 12 H 0.072 0.928 13 C -0.153 4.153 14 N -0.531 5.531 15 Si 0.755 3.245 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.198 1.198 19 C 0.036 3.964 20 C -0.215 4.215 21 C -0.214 4.214 22 S 0.634 5.366 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.387 -1.079 3.637 4.040 hybrid contribution 0.753 -0.376 1.089 1.376 sum -0.634 -1.456 4.726 4.986 Atomic orbital electron populations 1.21749 0.93578 1.02753 1.01844 1.20107 0.96816 0.88958 1.03138 1.26105 1.05941 1.04354 1.03807 1.19820 1.06979 0.93627 0.99744 1.20638 0.98994 0.97070 0.94318 1.24850 1.19849 1.00875 0.99378 1.17217 0.77709 0.85450 0.82097 1.90600 1.50209 1.46669 1.58931 1.48185 1.57111 1.21242 1.06064 1.19492 0.93144 0.86947 0.89424 1.21406 0.97218 1.09572 1.29550 0.92791 1.25335 0.96565 0.98733 0.94691 1.69956 1.17960 1.32865 1.32289 0.86017 0.80047 0.79633 0.78843 1.19416 1.20000 1.19789 1.21134 0.93659 0.83346 0.98244 1.22128 0.99796 0.97395 1.02172 1.22067 0.94929 1.02240 1.02176 1.86325 1.52417 0.98987 0.98870 0.92120 0.93885 0.90190 0.91677 0.89086 0.83406 0.84140 0.94454 0.94504 0.91714 0.89151 0.92576 0.89496 0.93161 0.93795 0.89468 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.89 71.98 0.71 -2.74 16 2 C -0.05 -1.43 6.36 29.85 0.19 -1.24 16 3 C -0.28 -9.86 5.53 24.68 0.14 -9.72 16 4 C -0.17 -5.80 10.00 21.08 0.21 -5.59 16 5 C -0.07 -2.86 10.02 21.72 0.22 -2.65 16 6 C -0.33 -14.23 6.20 24.08 0.15 -14.08 16 7 C 0.58 26.57 6.99 86.42 0.60 27.17 16 8 O -0.58 -27.23 13.04 -4.33 -0.06 -27.29 16 9 N -0.60 -25.87 2.42 -806.93 -1.95 -27.82 16 10 C 0.23 10.82 4.69 85.63 0.40 11.23 16 11 C -0.53 -25.96 6.67 25.60 0.17 -25.79 16 12 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 13 C 0.05 2.48 4.89 84.66 0.41 2.89 16 14 N -0.89 -44.25 13.29 21.45 0.28 -43.96 16 15 Si 0.93 38.79 29.54 68.60 2.03 40.82 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 19 C 0.14 5.12 3.27 44.99 0.15 5.27 16 20 C -0.16 -5.11 9.19 71.98 0.66 -4.45 16 21 C -0.16 -5.45 9.15 71.98 0.66 -4.79 16 22 S 0.36 14.91 15.54 -56.49 -0.88 14.03 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 29 H 0.14 5.06 8.06 -2.91 -0.02 5.04 16 30 H 0.04 1.84 4.87 -19.32 -0.09 1.74 16 31 H 0.04 1.78 7.86 -2.38 -0.02 1.76 16 32 H 0.27 12.89 8.31 -92.70 -0.77 12.12 16 33 H 0.09 3.19 7.76 -2.39 -0.02 3.18 16 34 H 0.06 2.08 6.10 -2.39 -0.01 2.07 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 2.10 6.05 -2.39 -0.01 2.09 16 Total: -1.00 -54.76 326.14 5.05 -49.71 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.95 Total: 19.00 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.67 Total: -24.49 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.66 Total: -71.79 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.06 Total: -27.29 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: 14.91 SS G_CDS: -0.88 Total: 14.03 kcal Total: -54.76 5.05 -49.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043640012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.005 kcal (2) G-P(sol) polarization free energy of solvation -54.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds