Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37471 * 123.34792 * 2 1 4 4 C 1.33822 * 115.09814 * 179.76512 * 3 2 1 5 5 S 1.70620 * 110.95148 * 0.48371 * 4 3 2 6 6 C 1.36640 * 123.35216 * 180.28870 * 2 1 3 7 7 C 1.46588 * 125.45916 * 0.02562 * 6 2 1 8 8 O 1.21705 * 119.99945 * 351.37349 * 7 6 2 9 9 N 1.34771 * 120.00135 * 171.37091 * 7 6 2 10 10 C 1.46505 * 120.00105 * 1.73109 * 9 7 6 11 11 C 1.50704 * 109.46852 * 82.71625 * 10 9 7 12 12 H 1.07993 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99822 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46943 * 60.00261 * 15 13 11 17 17 H 1.48502 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46913 * 300.00144 * 15 13 11 19 19 C 1.46497 * 120.00078 * 181.73398 * 9 7 6 20 20 C 1.53006 * 109.47096 * 95.37464 * 19 9 7 21 21 C 1.53001 * 109.47047 * 174.52087 * 20 19 9 22 22 C 1.52998 * 109.46977 * 294.51861 * 20 19 9 23 23 H 1.08994 * 109.47516 * 269.70791 * 1 2 3 24 24 H 1.09009 * 109.47342 * 29.71161 * 1 2 3 25 25 H 1.09006 * 109.47241 * 149.70878 * 1 2 3 26 26 H 1.08001 * 122.45439 * 359.97438 * 3 2 1 27 27 H 1.08001 * 124.52486 * 180.21168 * 4 3 2 28 28 H 1.09001 * 109.47498 * 202.72117 * 10 9 7 29 29 H 1.09003 * 109.47245 * 322.72310 * 10 9 7 30 30 H 0.97000 * 120.00068 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47301 * 215.37150 * 19 9 7 32 32 H 1.08996 * 109.47114 * 335.37586 * 19 9 7 33 33 H 1.09003 * 109.47186 * 54.52339 * 20 19 9 34 34 H 1.08996 * 109.46980 * 59.99708 * 21 20 19 35 35 H 1.09004 * 109.46986 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.47142 * 299.99852 * 21 20 19 37 37 H 1.08998 * 109.47020 * 305.90303 * 22 20 19 38 38 H 1.08999 * 109.46958 * 65.90301 * 22 20 19 39 39 H 1.08999 * 109.46947 * 185.89906 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5871 0.9563 0.0050 5 16 3.9623 -0.7081 -0.0034 6 6 2.2582 -1.1413 -0.0058 7 6 1.7284 -2.5081 -0.0132 8 8 0.5368 -2.6997 0.1435 9 7 2.5608 -3.5526 -0.1935 10 6 4.0002 -3.3247 -0.3442 11 6 4.6309 -3.1797 1.0168 12 1 4.0208 -3.2507 1.9050 13 6 5.9872 -2.9575 1.1279 14 7 6.7302 -2.8716 0.0462 15 14 6.7691 -2.7785 2.8148 16 1 6.5434 -4.0191 3.5992 17 1 8.2281 -2.5474 2.6621 18 1 6.1574 -1.6261 3.5242 19 6 2.0264 -4.9158 -0.2389 20 6 1.7985 -5.3261 -1.6952 21 6 1.3707 -6.7940 -1.7506 22 6 0.7013 -4.4518 -2.3056 23 1 -0.3634 -0.0052 1.0276 24 1 -0.3634 0.8926 -0.5094 25 1 -0.3634 -0.8874 -0.5184 26 1 1.8200 2.1335 -0.0004 27 1 4.3205 1.7491 0.0090 28 1 4.4495 -4.1704 -0.8647 29 1 4.1655 -2.4141 -0.9201 30 1 7.6843 -2.7149 0.1243 31 1 2.7370 -5.6003 0.2244 32 1 1.0805 -4.9535 0.3014 33 1 2.7226 -5.1954 -2.2584 34 1 0.4467 -6.9247 -1.1874 35 1 1.2080 -7.0861 -2.7881 36 1 2.1524 -7.4169 -1.3157 37 1 -0.1915 -4.5013 -1.6822 38 1 1.0482 -3.4200 -2.3621 39 1 0.4655 -4.8112 -3.3072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -19.079697 kcal Electronic energy + Delta-G solvation = -20831.407684 eV Core-core repulsion = 17865.258804 eV Total energy + Delta-G solvation = -2966.148880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.32383 -37.28899 -35.65726 -34.31402 -32.46546 -30.14609 -28.10670 -27.52587 -26.79417 -25.20558 -23.25150 -22.54082 -20.50161 -19.23945 -17.51164 -17.19632 -16.67503 -15.50261 -15.08708 -14.68843 -14.48239 -14.16652 -14.10425 -13.46434 -12.82908 -12.75932 -12.52056 -12.45662 -12.25073 -12.08644 -11.92855 -11.54211 -11.43555 -11.37511 -11.15136 -11.03298 -10.89530 -10.70524 -10.55513 -10.39348 -10.13917 -9.89856 -9.14790 -9.03961 -8.73057 -8.04417 -7.74102 -7.36133 -6.36342 -4.38872 1.42213 2.62438 3.05178 3.13567 3.18639 3.21387 3.25868 3.92399 4.02820 4.22936 4.97593 5.22974 5.29515 5.40650 5.56133 5.58829 5.87817 5.89989 5.97014 6.01734 6.05903 6.13577 6.17084 6.23919 6.29782 6.34132 6.38233 6.51242 6.58834 6.67159 6.73895 6.76924 6.94185 7.12089 7.19693 7.44681 7.60360 7.78683 8.25511 8.62391 9.02286 9.21825 10.67544 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.009445 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.055598 B = 2963.720507 C = 4667.742771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.054 4.054 3 C -0.166 4.166 4 C -0.334 4.334 5 S 0.393 5.607 6 C -0.296 4.296 7 C 0.592 3.408 8 O -0.561 6.561 9 N -0.596 5.596 10 C 0.227 3.773 11 C -0.536 4.536 12 H 0.068 0.932 13 C 0.076 3.924 14 N -0.877 5.877 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.126 3.874 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.136 4.136 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.146 0.854 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 0.399 -2.895 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.471 4.471 5 S 0.671 5.329 6 C -0.417 4.417 7 C 0.382 3.618 8 O -0.444 6.444 9 N -0.326 5.326 10 C 0.105 3.895 11 C -0.578 4.578 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.514 5.514 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.003 3.997 20 C -0.133 4.133 21 C -0.199 4.199 22 C -0.193 4.193 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.163 0.837 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.373 -0.423 -2.908 5.268 hybrid contribution -0.488 1.230 0.960 1.635 sum -4.860 0.808 -1.948 5.298 Atomic orbital electron populations 1.20499 0.90206 1.02210 1.01915 1.19171 0.96707 0.90856 1.00320 1.19511 0.92772 0.98227 1.09235 1.26641 1.00586 1.10185 1.09734 1.86011 0.99449 0.88462 1.58985 1.24573 0.99645 0.96920 1.20583 1.16937 0.85378 0.83331 0.76127 1.90653 1.15428 1.85540 1.52763 1.47982 1.09274 1.05298 1.70033 1.19640 0.74699 0.97469 0.97733 1.21482 0.93327 1.50393 0.92634 0.91396 1.24902 0.96747 0.94165 0.97212 1.69899 1.06826 1.46686 1.27949 0.86635 0.78307 0.79388 0.83995 1.19781 1.20795 1.19544 1.21388 0.99836 0.83088 0.95395 1.21521 0.99307 0.94968 0.97484 1.21747 1.01190 0.95656 1.01292 1.21739 0.98647 0.99606 0.99320 0.91880 0.93050 0.89963 0.86449 0.83656 0.93098 0.94116 0.91969 0.90715 0.90427 0.91104 0.92802 0.92943 0.92674 0.92343 0.93033 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.45 36.01 0.34 -1.20 16 2 C -0.05 -1.06 5.90 -105.48 -0.62 -1.68 16 3 C -0.17 -3.01 9.97 -41.41 -0.41 -3.42 16 4 C -0.33 -6.16 10.92 29.18 0.32 -5.84 16 5 S 0.39 8.21 15.87 -107.50 -1.71 6.50 16 6 C -0.30 -6.33 6.23 -36.79 -0.23 -6.56 16 7 C 0.59 12.98 6.28 -12.90 -0.08 12.90 16 8 O -0.56 -12.62 12.95 5.18 0.07 -12.55 16 9 N -0.60 -12.49 2.30 -176.63 -0.41 -12.90 16 10 C 0.23 5.13 4.76 -5.19 -0.02 5.10 16 11 C -0.54 -12.98 6.94 -34.44 -0.24 -13.22 16 12 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.08 1.84 5.02 -17.82 -0.09 1.75 16 14 N -0.88 -21.84 13.29 55.43 0.74 -21.10 16 15 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.13 2.28 4.92 -4.04 -0.02 2.26 16 20 C -0.11 -1.77 3.12 -90.62 -0.28 -2.05 16 21 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 22 C -0.14 -2.16 8.06 37.16 0.30 -1.86 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.08 1.52 6.24 -51.93 -0.32 1.20 16 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.05 1.19 8.02 -51.93 -0.42 0.77 16 29 H 0.04 0.97 4.52 -22.53 -0.10 0.86 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.08 1.43 7.24 -51.93 -0.38 1.05 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.96 8.01 -51.93 -0.42 0.55 16 38 H 0.05 0.93 7.00 -51.93 -0.36 0.57 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -25.75 324.39 -7.91 -33.66 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.77 Total: 2.39 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.70 Total: -15.26 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.33 Total: -34.00 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.71 Total: 6.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -25.75 -7.91 -33.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.583 kcal (2) G-P(sol) polarization free energy of solvation -25.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds