Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37471 * 123.34792 * 2 1 4 4 C 1.33822 * 115.09814 * 179.76512 * 3 2 1 5 5 S 1.70620 * 110.95148 * 0.48371 * 4 3 2 6 6 C 1.36640 * 123.35216 * 180.28870 * 2 1 3 7 7 C 1.46588 * 125.45916 * 0.02562 * 6 2 1 8 8 O 1.21705 * 119.99945 * 351.37349 * 7 6 2 9 9 N 1.34771 * 120.00135 * 171.37091 * 7 6 2 10 10 C 1.46505 * 120.00105 * 1.73109 * 9 7 6 11 11 C 1.50704 * 109.46852 * 82.71625 * 10 9 7 12 12 H 1.07993 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99822 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46943 * 60.00261 * 15 13 11 17 17 H 1.48502 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46913 * 300.00144 * 15 13 11 19 19 C 1.46497 * 120.00078 * 181.73398 * 9 7 6 20 20 C 1.53006 * 109.47096 * 95.37464 * 19 9 7 21 21 C 1.53001 * 109.47047 * 174.52087 * 20 19 9 22 22 C 1.52998 * 109.46977 * 294.51861 * 20 19 9 23 23 H 1.08994 * 109.47516 * 269.70791 * 1 2 3 24 24 H 1.09009 * 109.47342 * 29.71161 * 1 2 3 25 25 H 1.09006 * 109.47241 * 149.70878 * 1 2 3 26 26 H 1.08001 * 122.45439 * 359.97438 * 3 2 1 27 27 H 1.08001 * 124.52486 * 180.21168 * 4 3 2 28 28 H 1.09001 * 109.47498 * 202.72117 * 10 9 7 29 29 H 1.09003 * 109.47245 * 322.72310 * 10 9 7 30 30 H 0.97000 * 120.00068 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47301 * 215.37150 * 19 9 7 32 32 H 1.08996 * 109.47114 * 335.37586 * 19 9 7 33 33 H 1.09003 * 109.47186 * 54.52339 * 20 19 9 34 34 H 1.08996 * 109.46980 * 59.99708 * 21 20 19 35 35 H 1.09004 * 109.46986 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.47142 * 299.99852 * 21 20 19 37 37 H 1.08998 * 109.47020 * 305.90303 * 22 20 19 38 38 H 1.08999 * 109.46958 * 65.90301 * 22 20 19 39 39 H 1.08999 * 109.46947 * 185.89906 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5871 0.9563 0.0050 5 16 3.9623 -0.7081 -0.0034 6 6 2.2582 -1.1413 -0.0058 7 6 1.7284 -2.5081 -0.0132 8 8 0.5368 -2.6997 0.1435 9 7 2.5608 -3.5526 -0.1935 10 6 4.0002 -3.3247 -0.3442 11 6 4.6309 -3.1797 1.0168 12 1 4.0208 -3.2507 1.9050 13 6 5.9872 -2.9575 1.1279 14 7 6.7302 -2.8716 0.0462 15 14 6.7691 -2.7785 2.8148 16 1 6.5434 -4.0191 3.5992 17 1 8.2281 -2.5474 2.6621 18 1 6.1574 -1.6261 3.5242 19 6 2.0264 -4.9158 -0.2389 20 6 1.7985 -5.3261 -1.6952 21 6 1.3707 -6.7940 -1.7506 22 6 0.7013 -4.4518 -2.3056 23 1 -0.3634 -0.0052 1.0276 24 1 -0.3634 0.8926 -0.5094 25 1 -0.3634 -0.8874 -0.5184 26 1 1.8200 2.1335 -0.0004 27 1 4.3205 1.7491 0.0090 28 1 4.4495 -4.1704 -0.8647 29 1 4.1655 -2.4141 -0.9201 30 1 7.6843 -2.7149 0.1243 31 1 2.7370 -5.6003 0.2244 32 1 1.0805 -4.9535 0.3014 33 1 2.7226 -5.1954 -2.2584 34 1 0.4467 -6.9247 -1.1874 35 1 1.2080 -7.0861 -2.7881 36 1 2.1524 -7.4169 -1.3157 37 1 -0.1915 -4.5013 -1.6822 38 1 1.0482 -3.4200 -2.3621 39 1 0.4655 -4.8112 -3.3072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -30.770106 kcal Electronic energy + Delta-G solvation = -20831.914618 eV Core-core repulsion = 17865.258804 eV Total energy + Delta-G solvation = -2966.655814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95164 -38.79244 -37.18504 -35.91978 -34.21468 -31.61486 -29.63976 -29.24834 -28.00251 -26.67420 -25.04812 -24.03142 -21.95290 -20.67790 -19.08160 -18.88587 -18.48414 -17.06258 -16.73361 -16.37423 -16.04545 -15.66871 -15.46110 -14.84188 -14.44244 -14.29610 -14.09737 -14.00576 -13.77549 -13.61457 -13.11079 -13.02972 -12.91055 -12.84056 -12.68558 -12.64304 -12.32105 -12.28813 -12.03490 -11.84418 -11.67084 -11.53580 -10.80542 -10.68214 -10.52475 -9.65729 -9.34741 -8.97363 -8.21722 -6.29368 -0.13870 1.03526 1.40646 1.44989 1.50404 1.54186 1.64442 2.28453 2.38686 2.47481 3.09732 3.80918 4.00054 4.07979 4.17638 4.20000 4.47263 4.58112 4.66180 4.69120 4.76451 4.79061 4.83261 4.88344 4.89716 5.01201 5.07458 5.13145 5.18664 5.21448 5.26672 5.41753 5.46049 5.59098 5.66549 5.75292 5.85659 5.94909 6.51363 6.76388 7.28537 7.39198 8.81583 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.009445 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.055598 B = 2963.720507 C = 4667.742771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.052 4.052 3 C -0.164 4.164 4 C -0.317 4.317 5 S 0.339 5.661 6 C -0.324 4.324 7 C 0.586 3.414 8 O -0.575 6.575 9 N -0.598 5.598 10 C 0.238 3.762 11 C -0.541 4.541 12 H 0.050 0.950 13 C 0.049 3.951 14 N -0.897 5.897 15 Si 0.933 3.067 16 H -0.274 1.274 17 H -0.276 1.276 18 H -0.272 1.272 19 C 0.122 3.878 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.127 4.127 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.153 0.847 27 H 0.173 0.827 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.272 0.728 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.023 0.977 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 1.299 -2.989 6.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.195 4.195 4 C -0.455 4.455 5 S 0.615 5.385 6 C -0.445 4.445 7 C 0.376 3.624 8 O -0.459 6.459 9 N -0.328 5.328 10 C 0.115 3.885 11 C -0.582 4.582 12 H 0.068 0.932 13 C -0.155 4.155 14 N -0.534 5.534 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.200 1.200 18 H -0.197 1.197 19 C 0.000 4.000 20 C -0.127 4.127 21 C -0.191 4.191 22 C -0.185 4.185 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.171 0.829 27 H 0.191 0.809 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.947 0.447 -3.001 5.803 hybrid contribution -0.394 1.057 0.969 1.487 sum -5.341 1.504 -2.032 5.909 Atomic orbital electron populations 1.20516 0.88581 1.02983 1.02396 1.19672 0.98063 0.90800 0.98403 1.19850 0.92472 0.99229 1.07952 1.26810 1.01508 1.08972 1.08197 1.86062 1.00247 0.91072 1.61082 1.24693 0.99825 0.97304 1.22670 1.17126 0.85347 0.83875 0.76004 1.90626 1.15726 1.85864 1.53675 1.48029 1.08659 1.06310 1.69763 1.19404 0.75405 0.96786 0.96902 1.21418 0.93473 1.50817 0.92504 0.93172 1.25326 0.96916 0.93884 0.99370 1.69953 1.06998 1.47389 1.29077 0.85968 0.77931 0.79032 0.81199 1.19895 1.20045 1.19702 1.21568 0.99322 0.81868 0.97286 1.21471 0.98888 0.97071 0.95317 1.21696 1.01604 0.93135 1.02715 1.21653 0.98142 0.98084 1.00588 0.91349 0.89766 0.91717 0.82916 0.80939 0.94446 0.94401 0.91818 0.90686 0.90935 0.92071 0.92138 0.91132 0.92039 0.93081 0.95807 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 9.45 71.24 0.67 -2.12 16 2 C -0.05 -1.96 5.90 -20.42 -0.12 -2.08 16 3 C -0.16 -5.47 9.97 21.08 0.21 -5.26 16 4 C -0.32 -11.01 10.92 66.82 0.73 -10.28 16 5 S 0.34 14.17 15.87 -56.49 -0.90 13.28 16 6 C -0.32 -13.91 6.23 24.08 0.15 -13.76 16 7 C 0.59 26.22 6.28 86.42 0.54 26.76 16 8 O -0.57 -26.27 12.95 -4.37 -0.06 -26.33 16 9 N -0.60 -25.81 2.30 -830.95 -1.91 -27.72 16 10 C 0.24 11.09 4.76 85.63 0.41 11.49 16 11 C -0.54 -26.75 6.94 25.60 0.18 -26.58 16 12 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 13 C 0.05 2.39 5.02 84.65 0.42 2.82 16 14 N -0.90 -45.02 13.29 21.45 0.28 -44.74 16 15 Si 0.93 39.64 29.54 68.60 2.03 41.66 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 C 0.12 4.49 4.92 86.38 0.43 4.92 16 20 C -0.11 -3.34 3.12 -10.79 -0.03 -3.38 16 21 C -0.13 -3.16 9.19 71.98 0.66 -2.50 16 22 C -0.13 -4.02 8.06 71.98 0.58 -3.44 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.06 2.35 6.24 -2.38 -0.01 2.33 16 26 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 28 H 0.04 1.82 8.02 -2.39 -0.02 1.80 16 29 H 0.04 1.86 4.52 -21.08 -0.10 1.77 16 30 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 31 H 0.07 2.70 8.11 -2.39 -0.02 2.68 16 32 H 0.07 2.72 7.24 -2.39 -0.02 2.70 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.67 8.01 -2.39 -0.02 1.65 16 38 H 0.02 0.85 7.00 -2.39 -0.02 0.84 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -55.10 324.39 5.22 -49.88 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.94 Total: 17.38 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.83 Total: -23.41 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.63 Total: -72.46 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 14.17 SS G_CDS: -0.90 Total: 13.28 kcal Total: -55.10 5.22 -49.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal (2) G-P(sol) polarization free energy of solvation -55.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds