Wall clock time and date at job start Tue Mar 31 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33820 * 124.52181 * 2 1 4 4 C 1.37464 * 115.10202 * 179.97438 * 3 2 1 5 5 C 1.36648 * 113.29900 * 0.02562 * 4 3 2 6 6 C 1.46577 * 125.45981 * 180.26100 * 5 4 3 7 7 O 1.21698 * 120.00242 * 351.98544 * 6 5 4 8 8 N 1.34781 * 119.99896 * 171.98840 * 6 5 4 9 9 C 1.46492 * 120.00235 * 1.45915 * 8 6 5 10 10 C 1.50699 * 109.46882 * 82.77533 * 9 8 6 11 11 H 1.07997 * 120.00295 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99588 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00463 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46900 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47322 * 119.99938 * 14 12 10 17 17 H 1.48496 * 109.47186 * 239.99860 * 14 12 10 18 18 C 1.46509 * 119.99848 * 181.46515 * 8 6 5 19 19 C 1.52998 * 109.46907 * 95.20949 * 18 8 6 20 20 C 1.53004 * 109.46747 * 174.65350 * 19 18 8 21 21 C 1.52998 * 109.47179 * 294.64897 * 19 18 8 22 22 S 1.70615 * 124.52346 * 179.97438 * 2 1 3 23 23 H 1.09008 * 109.46686 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47131 * 300.01150 * 1 2 3 25 25 H 1.09006 * 109.47043 * 60.01901 * 1 2 3 26 26 H 1.07999 * 122.44686 * 359.94793 * 3 2 1 27 27 H 1.07995 * 123.35252 * 179.97438 * 4 3 2 28 28 H 1.08995 * 109.47475 * 202.77261 * 9 8 6 29 29 H 1.09000 * 109.47434 * 322.77872 * 9 8 6 30 30 H 0.97003 * 119.99905 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.46956 * 215.20738 * 18 8 6 32 32 H 1.08998 * 109.47177 * 335.20749 * 18 8 6 33 33 H 1.09002 * 109.47644 * 54.65119 * 19 18 8 34 34 H 1.08997 * 109.47485 * 59.99903 * 20 19 18 35 35 H 1.09004 * 109.46545 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.46896 * 299.99475 * 20 19 18 37 37 H 1.09001 * 109.47347 * 185.88999 * 21 19 18 38 38 H 1.09007 * 109.47382 * 305.88868 * 21 19 18 39 39 H 1.08999 * 109.47328 * 65.88685 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9493 -0.4490 0.0005 6 6 5.3123 -0.9881 0.0064 7 8 6.2628 -0.2413 -0.1350 8 7 5.5130 -2.3110 0.1684 9 6 4.3679 -3.2142 0.3064 10 6 3.8340 -3.5607 -1.0595 11 1 4.3011 -3.1496 -1.9422 12 6 2.7490 -4.4025 -1.1825 13 7 2.1803 -4.9035 -0.1076 14 14 2.0875 -4.8326 -2.8757 15 1 2.8985 -4.1461 -3.9130 16 1 2.1653 -6.3015 -3.0791 17 1 0.6731 -4.3926 -2.9810 18 6 6.8765 -2.8458 0.2065 19 6 7.3337 -2.9737 1.6609 20 6 8.7029 -3.6549 1.7071 21 6 7.4353 -1.5818 2.2879 22 16 2.4740 -1.4057 0.0006 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5136 -0.8902 26 1 1.8429 2.0965 -0.0008 27 1 4.3549 1.6703 0.0002 28 1 4.6829 -4.1252 0.8152 29 1 3.5870 -2.7245 0.8883 30 1 1.4168 -5.4954 -0.1941 31 1 6.8953 -3.8269 -0.2679 32 1 7.5463 -2.1714 -0.3270 33 1 6.6116 -3.5711 2.2177 34 1 9.4249 -3.0576 1.1505 35 1 9.0288 -3.7456 2.7433 36 1 8.6305 -4.6466 1.2605 37 1 7.8599 -1.6640 3.2884 38 1 8.0766 -0.9516 1.6717 39 1 6.4417 -1.1379 2.3502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:52 Heat of formation + Delta-G solvation = -21.343261 kcal Electronic energy + Delta-G solvation = -20627.765101 eV Core-core repulsion = 17661.518066 eV Total energy + Delta-G solvation = -2966.247035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.24382 -37.10145 -35.71457 -34.33161 -32.46740 -31.27379 -27.89810 -27.12968 -26.77485 -25.05663 -23.25997 -22.54454 -20.54311 -19.31221 -17.63794 -17.18769 -16.69930 -15.58490 -15.06708 -14.67722 -14.58575 -14.13289 -14.06949 -13.50802 -13.00793 -12.89645 -12.60461 -12.49768 -12.25247 -12.08266 -11.92785 -11.66660 -11.46726 -11.32815 -11.17610 -11.08026 -10.87639 -10.81916 -10.55828 -10.39657 -10.14796 -9.87371 -9.18832 -9.10132 -8.78201 -7.97968 -7.69314 -7.47626 -6.37681 -4.40049 1.39505 2.58020 3.00646 3.12501 3.14837 3.22329 3.27578 3.91123 4.05418 4.22264 4.96372 5.22779 5.29429 5.40431 5.45598 5.57418 5.71349 5.87510 5.88965 5.97180 6.00652 6.03323 6.16408 6.17127 6.28423 6.32806 6.36322 6.38068 6.52553 6.66815 6.72704 6.77330 6.92594 6.97064 7.18350 7.43237 7.59269 7.77104 8.23594 8.61830 9.00456 9.20833 10.66290 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.008734 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.909192 B = 3204.951191 C = 4782.511880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.301 4.301 3 C -0.174 4.174 4 C -0.081 4.081 5 C -0.296 4.296 6 C 0.592 3.408 7 O -0.566 6.566 8 N -0.596 5.596 9 C 0.227 3.773 10 C -0.536 4.536 11 H 0.069 0.931 12 C 0.075 3.925 13 N -0.877 5.877 14 Si 0.890 3.110 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.126 3.874 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.136 4.136 22 S 0.401 5.599 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.269 0.731 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 3.371 2.929 4.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.421 4.421 3 C -0.204 4.204 4 C -0.115 4.115 5 C -0.417 4.417 6 C 0.381 3.619 7 O -0.448 6.448 8 N -0.325 5.325 9 C 0.104 3.896 10 C -0.578 4.578 11 H 0.087 0.913 12 C -0.130 4.130 13 N -0.513 5.513 14 Si 0.716 3.284 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.203 1.203 18 C 0.002 3.998 19 C -0.133 4.133 20 C -0.199 4.199 21 C -0.194 4.194 22 S 0.677 5.323 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.151 0.849 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.347 2.094 2.939 3.852 hybrid contribution -0.315 1.297 -0.927 1.625 sum 1.031 3.392 2.011 4.076 Atomic orbital electron populations 1.20183 0.89298 1.02191 1.01640 1.25772 1.02393 1.04980 1.08945 1.19540 0.92650 0.98454 1.09800 1.20346 0.95611 0.94842 1.00709 1.24698 0.98529 0.98479 1.20037 1.16985 0.86842 0.82002 0.76059 1.90684 1.42653 1.58551 1.52930 1.47989 1.07842 1.06534 1.70168 1.19649 0.82561 0.89568 0.97802 1.21564 1.14508 1.29033 0.92659 0.91259 1.24905 0.96053 0.94825 0.97267 1.69918 1.22187 1.31071 1.28135 0.86527 0.79224 0.78566 0.84049 1.19251 1.20513 1.20337 1.21400 0.83393 0.99501 0.95457 1.21522 0.97168 0.97178 0.97424 1.21747 0.96564 1.00258 1.01318 1.21744 1.01958 0.96368 0.99281 1.86009 0.89905 0.97305 1.59078 0.91871 0.91721 0.91787 0.86458 0.84890 0.92996 0.94158 0.92070 0.90629 0.90445 0.91070 0.92791 0.92922 0.92653 0.93805 0.92349 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.33 36.01 0.37 -0.74 16 2 C -0.30 -5.52 6.28 -35.86 -0.23 -5.74 16 3 C -0.17 -3.12 9.99 -41.41 -0.41 -3.54 16 4 C -0.08 -1.58 10.02 -40.44 -0.41 -1.99 16 5 C -0.30 -6.37 6.23 -36.80 -0.23 -6.60 16 6 C 0.59 13.24 6.31 -12.90 -0.08 13.16 16 7 O -0.57 -13.33 15.36 5.19 0.08 -13.25 16 8 N -0.60 -12.62 2.30 -176.65 -0.41 -13.03 16 9 C 0.23 5.13 4.76 -5.20 -0.02 5.10 16 10 C -0.54 -12.96 6.96 -34.44 -0.24 -13.20 16 11 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 12 C 0.08 1.82 5.02 -17.82 -0.09 1.73 16 13 N -0.88 -21.69 13.29 55.43 0.74 -20.96 16 14 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.13 2.30 4.93 -4.04 -0.02 2.28 16 19 C -0.11 -1.79 3.12 -90.62 -0.28 -2.07 16 20 C -0.14 -1.80 9.19 37.16 0.34 -1.45 16 21 C -0.14 -2.21 8.04 37.16 0.30 -1.91 16 22 S 0.40 8.34 15.79 -107.50 -1.70 6.64 16 23 H 0.06 0.93 8.11 -51.92 -0.42 0.51 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 27 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 28 H 0.05 1.21 8.02 -51.93 -0.42 0.79 16 29 H 0.04 0.96 4.49 -22.30 -0.10 0.86 16 30 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 31 H 0.08 1.34 8.11 -51.93 -0.42 0.91 16 32 H 0.08 1.45 7.25 -51.93 -0.38 1.07 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.99 7.98 -51.93 -0.41 0.57 16 39 H 0.05 0.95 6.98 -51.93 -0.36 0.58 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -26.25 328.97 -8.21 -34.46 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.86 Total: 1.83 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.00 Total: -14.97 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.33 Total: -33.99 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 8.34 SS G_CDS: -1.70 Total: 6.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.25 -8.21 -34.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds