Wall clock time and date at job start Tue Mar 31 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33820 * 124.52181 * 2 1 4 4 C 1.37464 * 115.10202 * 179.97438 * 3 2 1 5 5 C 1.36648 * 113.29900 * 0.02562 * 4 3 2 6 6 C 1.46577 * 125.45981 * 180.26100 * 5 4 3 7 7 O 1.21698 * 120.00242 * 351.98544 * 6 5 4 8 8 N 1.34781 * 119.99896 * 171.98840 * 6 5 4 9 9 C 1.46492 * 120.00235 * 1.45915 * 8 6 5 10 10 C 1.50699 * 109.46882 * 82.77533 * 9 8 6 11 11 H 1.07997 * 120.00295 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99588 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00463 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46900 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47322 * 119.99938 * 14 12 10 17 17 H 1.48496 * 109.47186 * 239.99860 * 14 12 10 18 18 C 1.46509 * 119.99848 * 181.46515 * 8 6 5 19 19 C 1.52998 * 109.46907 * 95.20949 * 18 8 6 20 20 C 1.53004 * 109.46747 * 174.65350 * 19 18 8 21 21 C 1.52998 * 109.47179 * 294.64897 * 19 18 8 22 22 S 1.70615 * 124.52346 * 179.97438 * 2 1 3 23 23 H 1.09008 * 109.46686 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47131 * 300.01150 * 1 2 3 25 25 H 1.09006 * 109.47043 * 60.01901 * 1 2 3 26 26 H 1.07999 * 122.44686 * 359.94793 * 3 2 1 27 27 H 1.07995 * 123.35252 * 179.97438 * 4 3 2 28 28 H 1.08995 * 109.47475 * 202.77261 * 9 8 6 29 29 H 1.09000 * 109.47434 * 322.77872 * 9 8 6 30 30 H 0.97003 * 119.99905 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.46956 * 215.20738 * 18 8 6 32 32 H 1.08998 * 109.47177 * 335.20749 * 18 8 6 33 33 H 1.09002 * 109.47644 * 54.65119 * 19 18 8 34 34 H 1.08997 * 109.47485 * 59.99903 * 20 19 18 35 35 H 1.09004 * 109.46545 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.46896 * 299.99475 * 20 19 18 37 37 H 1.09001 * 109.47347 * 185.88999 * 21 19 18 38 38 H 1.09007 * 109.47382 * 305.88868 * 21 19 18 39 39 H 1.08999 * 109.47328 * 65.88685 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9493 -0.4490 0.0005 6 6 5.3123 -0.9881 0.0064 7 8 6.2628 -0.2413 -0.1350 8 7 5.5130 -2.3110 0.1684 9 6 4.3679 -3.2142 0.3064 10 6 3.8340 -3.5607 -1.0595 11 1 4.3011 -3.1496 -1.9422 12 6 2.7490 -4.4025 -1.1825 13 7 2.1803 -4.9035 -0.1076 14 14 2.0875 -4.8326 -2.8757 15 1 2.8985 -4.1461 -3.9130 16 1 2.1653 -6.3015 -3.0791 17 1 0.6731 -4.3926 -2.9810 18 6 6.8765 -2.8458 0.2065 19 6 7.3337 -2.9737 1.6609 20 6 8.7029 -3.6549 1.7071 21 6 7.4353 -1.5818 2.2879 22 16 2.4740 -1.4057 0.0006 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5136 -0.8902 26 1 1.8429 2.0965 -0.0008 27 1 4.3549 1.6703 0.0002 28 1 4.6829 -4.1252 0.8152 29 1 3.5870 -2.7245 0.8883 30 1 1.4168 -5.4954 -0.1941 31 1 6.8953 -3.8269 -0.2679 32 1 7.5463 -2.1714 -0.3270 33 1 6.6116 -3.5711 2.2177 34 1 9.4249 -3.0576 1.1505 35 1 9.0288 -3.7456 2.7433 36 1 8.6305 -4.6466 1.2605 37 1 7.8599 -1.6640 3.2884 38 1 8.0766 -0.9516 1.6717 39 1 6.4417 -1.1379 2.3502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:52 Heat of formation + Delta-G solvation = -33.428250 kcal Electronic energy + Delta-G solvation = -20628.289146 eV Core-core repulsion = 17661.518066 eV Total energy + Delta-G solvation = -2966.771080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91191 -38.60449 -37.26730 -35.94987 -34.23167 -32.66837 -29.57439 -28.69570 -27.99784 -26.50858 -25.05463 -24.03768 -22.01641 -20.74449 -19.23087 -18.88015 -18.51406 -17.20650 -16.63707 -16.40239 -16.19192 -15.58266 -15.48847 -14.81983 -14.49705 -14.38569 -14.23565 -14.05296 -13.74353 -13.62957 -13.14439 -13.05055 -12.88489 -12.83982 -12.67027 -12.66414 -12.44500 -12.30200 -12.08666 -11.85815 -11.65587 -11.55558 -10.93254 -10.68286 -10.58933 -9.62980 -9.25386 -9.11123 -8.22715 -6.30276 -0.17311 0.98588 1.37414 1.45019 1.49539 1.53061 1.61789 2.26291 2.38237 2.46153 3.08778 3.78197 3.98077 4.05855 4.11567 4.18331 4.46397 4.60183 4.64779 4.65159 4.73789 4.78323 4.79143 4.81804 4.88066 4.99715 5.05702 5.10040 5.13466 5.19942 5.26579 5.39976 5.43353 5.46019 5.64058 5.72324 5.82227 5.93055 6.47944 6.74509 7.25520 7.35944 8.81209 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.008734 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.909192 B = 3204.951191 C = 4782.511880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.285 4.285 3 C -0.174 4.174 4 C -0.074 4.074 5 C -0.326 4.326 6 C 0.585 3.415 7 O -0.587 6.587 8 N -0.596 5.596 9 C 0.237 3.763 10 C -0.541 4.541 11 H 0.049 0.951 12 C 0.050 3.950 13 N -0.896 5.896 14 Si 0.933 3.067 15 H -0.276 1.276 16 H -0.275 1.275 17 H -0.270 1.270 18 C 0.121 3.879 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.128 4.128 22 S 0.351 5.649 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.142 0.858 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.273 0.727 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 4.024 3.096 5.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.404 4.404 3 C -0.203 4.203 4 C -0.109 4.109 5 C -0.447 4.447 6 C 0.375 3.625 7 O -0.472 6.472 8 N -0.325 5.325 9 C 0.114 3.886 10 C -0.582 4.582 11 H 0.068 0.932 12 C -0.154 4.154 13 N -0.533 5.533 14 Si 0.759 3.241 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.195 1.195 18 C -0.002 4.002 19 C -0.128 4.128 20 C -0.191 4.191 21 C -0.186 4.186 22 S 0.626 5.374 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.600 2.720 3.108 4.173 hybrid contribution -0.124 1.216 -0.960 1.554 sum 0.476 3.936 2.148 4.509 Atomic orbital electron populations 1.20338 0.86560 1.02814 1.03800 1.26056 1.04117 1.03412 1.06843 1.19832 0.91709 0.99965 1.08838 1.20666 0.96896 0.94290 0.99049 1.24764 0.98213 0.99358 1.22339 1.17207 0.87219 0.82196 0.75830 1.90649 1.43325 1.58923 1.54281 1.48044 1.08592 1.06220 1.69671 1.19435 0.82929 0.89160 0.97032 1.21466 1.14896 1.29432 0.92445 0.93230 1.25315 0.96014 0.94647 0.99440 1.69963 1.22575 1.31508 1.29227 0.85861 0.78864 0.78342 0.81039 1.20106 1.20046 1.19541 1.21598 0.82019 0.99158 0.97413 1.21476 0.98874 0.97188 0.95216 1.21698 0.94406 1.00267 1.02777 1.21666 1.00178 0.96136 1.00599 1.86026 0.90908 0.99445 1.61035 0.92127 0.89241 0.89683 0.83030 0.84062 0.94183 0.94386 0.91762 0.90382 0.91119 0.91841 0.92209 0.91058 0.91898 0.91262 0.93280 0.95865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 10.33 71.24 0.74 -1.31 16 2 C -0.28 -9.83 6.28 24.68 0.15 -9.67 16 3 C -0.17 -5.80 9.99 21.08 0.21 -5.59 16 4 C -0.07 -2.82 10.02 21.71 0.22 -2.61 16 5 C -0.33 -14.17 6.23 24.07 0.15 -14.02 16 6 C 0.59 26.91 6.31 86.42 0.55 27.45 16 7 O -0.59 -28.35 15.36 -4.34 -0.07 -28.42 16 8 N -0.60 -26.08 2.30 -831.00 -1.91 -27.99 16 9 C 0.24 11.06 4.76 85.63 0.41 11.47 16 10 C -0.54 -26.76 6.96 25.60 0.18 -26.58 16 11 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 12 C 0.05 2.42 5.02 84.65 0.42 2.85 16 13 N -0.90 -44.46 13.29 21.45 0.28 -44.17 16 14 Si 0.93 39.43 29.54 68.60 2.03 41.46 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 C 0.12 4.50 4.93 86.38 0.43 4.93 16 19 C -0.11 -3.39 3.12 -10.79 -0.03 -3.42 16 20 C -0.13 -3.19 9.19 71.98 0.66 -2.52 16 21 C -0.13 -4.15 8.04 71.98 0.58 -3.58 16 22 S 0.35 14.63 15.79 -56.49 -0.89 13.74 16 23 H 0.06 1.65 8.11 -2.38 -0.02 1.63 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.14 5.10 8.06 -2.91 -0.02 5.08 16 28 H 0.04 1.93 8.02 -2.39 -0.02 1.91 16 29 H 0.04 1.87 4.49 -21.23 -0.10 1.77 16 30 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 31 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 32 H 0.07 2.71 7.25 -2.39 -0.02 2.70 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.66 7.98 -2.38 -0.02 1.64 16 39 H 0.02 0.85 6.98 -2.39 -0.02 0.84 16 Total: -1.00 -56.30 328.97 5.04 -51.26 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.94 Total: 16.73 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.66 Total: -22.61 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.63 Total: -72.16 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.07 Total: -28.42 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 16 Polarization: 14.63 SS G_CDS: -0.89 Total: 13.74 kcal Total: -56.30 5.04 -51.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.831 kcal (2) G-P(sol) polarization free energy of solvation -56.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds