Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.52993 * 109.47426 * 120.00165 * 2 1 3 5 5 N 1.46500 * 109.47227 * 65.00280 * 4 2 1 6 6 C 1.46508 * 119.99855 * 270.00176 * 5 4 2 7 7 C 1.50704 * 109.46858 * 269.99621 * 6 5 4 8 8 H 1.08004 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99985 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99867 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47109 * 59.99979 * 11 9 7 13 13 H 1.48496 * 109.47229 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46912 * 300.00234 * 11 9 7 15 15 C 1.34774 * 120.00515 * 90.00025 * 5 4 2 16 16 O 1.21283 * 120.00315 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99429 * 359.97438 * 15 5 4 18 18 C 1.50703 * 109.46698 * 180.02562 * 17 15 5 19 19 C 1.38425 * 122.53762 * 90.00158 * 18 17 15 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97431 * 18 17 15 23 23 H 1.08991 * 109.47362 * 59.99876 * 1 2 3 24 24 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46768 * 299.99418 * 1 2 3 26 26 H 1.09001 * 109.46768 * 240.00582 * 2 1 3 27 27 H 1.09005 * 109.47068 * 180.02562 * 3 2 1 28 28 H 1.08991 * 109.47328 * 300.00144 * 3 2 1 29 29 H 1.09001 * 109.47048 * 60.00754 * 3 2 1 30 30 H 1.08998 * 109.47295 * 305.00167 * 4 2 1 31 31 H 1.09004 * 109.47320 * 185.00078 * 4 2 1 32 32 H 1.08999 * 109.46951 * 29.99220 * 6 5 4 33 33 H 1.08994 * 109.47372 * 150.00041 * 6 5 4 34 34 H 0.97006 * 120.00003 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47203 * 60.00330 * 17 15 5 36 36 H 1.09003 * 109.47454 * 299.99901 * 17 15 5 37 37 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 38 38 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 39 39 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6526 -2.1329 1.1904 6 6 0.3747 -2.5660 1.7612 7 6 0.5719 -2.9410 3.2074 8 1 1.5510 -2.8639 3.6566 9 6 -0.4979 -3.3815 3.9574 10 7 -1.6903 -3.4748 3.4105 11 14 -0.2537 -3.8456 5.7503 12 1 0.2510 -2.6685 6.5019 13 1 -1.5489 -4.2847 6.3288 14 1 0.7311 -4.9529 5.8451 15 6 2.4716 -3.0330 0.6114 16 8 2.1506 -4.2016 0.5624 17 6 3.7859 -2.5873 0.0238 18 6 4.5054 -3.7770 -0.5576 19 6 4.3386 -4.1787 -1.8717 20 6 5.0493 -5.2504 -2.2264 21 16 5.9934 -5.8130 -0.8531 22 6 5.3514 -4.5224 0.1549 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6055 -0.2618 2.1369 31 1 3.1264 -0.6443 1.2950 32 1 -0.3483 -1.7533 1.6919 33 1 0.0044 -3.4298 1.2092 34 1 -2.4430 -3.7851 3.9381 35 1 4.3991 -2.1374 0.8047 36 1 3.6027 -1.8543 -0.7619 37 1 3.6796 -3.6661 -2.5568 38 1 5.0450 -5.7038 -3.2067 39 1 5.6030 -4.3592 1.1924 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -14.851045 kcal Electronic energy + Delta-G solvation = -20149.133648 eV Core-core repulsion = 17183.168136 eV Total energy + Delta-G solvation = -2965.965512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47744 -37.64565 -36.17644 -33.51645 -32.30754 -30.98061 -28.45934 -27.05886 -26.80940 -25.35024 -23.44499 -22.22703 -20.23394 -18.86283 -18.17112 -17.38085 -16.53143 -16.18786 -15.65468 -15.02320 -14.51049 -14.49131 -13.91312 -13.58040 -13.17710 -12.86027 -12.68251 -12.52016 -12.26926 -12.05090 -12.05042 -11.95542 -11.50873 -11.40927 -11.29491 -10.96897 -10.89778 -10.68011 -10.64786 -10.41402 -10.24069 -10.09601 -9.57188 -8.93070 -8.58425 -8.39618 -8.16059 -7.58170 -6.01644 -4.05809 1.19847 1.83784 2.13702 2.87213 3.32610 3.37294 3.39544 3.50137 4.06491 4.47271 4.99587 5.05394 5.13716 5.16652 5.23051 5.32262 5.41614 5.51613 5.56630 5.66953 5.75687 5.80508 5.85812 5.90218 6.11259 6.16710 6.18086 6.21267 6.32052 6.54160 6.58888 6.65817 6.70965 7.14481 7.48427 7.60527 7.95237 8.27913 8.48230 8.93753 9.16610 9.58991 11.06198 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.005715 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.157805 B = 4898.590226 C = 6464.836600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.506 3.494 16 O -0.533 6.533 17 C -0.085 4.085 18 C -0.076 4.076 19 C -0.116 4.116 20 C -0.216 4.216 21 S 0.077 5.923 22 C -0.197 4.197 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.161 0.839 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.696 5.930 -9.908 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.010 4.010 5 N -0.328 5.328 6 C 0.124 3.876 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.292 3.708 16 O -0.409 6.409 17 C -0.128 4.128 18 C -0.088 4.088 19 C -0.147 4.147 20 C -0.351 4.351 21 S 0.340 5.660 22 C -0.332 4.332 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.331 4.032 -9.649 16.943 hybrid contribution -1.021 0.907 0.879 1.623 sum 12.310 4.939 -8.770 15.901 Atomic orbital electron populations 1.21929 0.94637 1.03089 1.00934 1.21589 0.97112 0.95773 0.98890 1.21783 1.00535 0.96048 1.01770 1.21544 0.98998 0.82481 0.97937 1.48203 1.21804 1.06220 1.56543 1.19374 0.78739 0.96304 0.93144 1.21418 0.94955 1.44411 0.95623 0.92671 1.24913 0.95076 0.95464 0.98590 1.69918 0.99808 1.47047 1.36660 0.86598 0.77350 0.78938 0.84768 1.20286 1.21192 1.20262 1.20177 0.85261 0.86244 0.79111 1.90689 1.74841 1.17408 1.58012 1.20503 0.95282 0.95856 1.01123 1.18433 0.97924 0.98749 0.93683 1.20020 1.00755 0.97840 0.96070 1.25439 1.04989 1.02262 1.02456 1.84038 1.46368 1.32224 1.03340 1.25360 1.04868 0.99610 1.03380 0.93671 0.91252 0.92530 0.91612 0.92904 0.92878 0.92499 0.89998 0.91720 0.94201 0.94178 0.92729 0.88710 0.88687 0.84526 0.82152 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.18 37.16 0.30 -1.92 16 2 C -0.11 -1.52 3.12 -90.62 -0.28 -1.80 16 3 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 4 C 0.11 1.80 4.70 -4.05 -0.02 1.78 16 5 N -0.60 -12.28 2.28 -175.05 -0.40 -12.67 16 6 C 0.24 6.26 4.23 -5.19 -0.02 6.24 16 7 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.51 10.43 7.67 -10.98 -0.08 10.35 16 16 O -0.53 -13.61 15.61 5.56 0.09 -13.52 16 17 C -0.08 -1.27 4.51 -29.03 -0.13 -1.40 16 18 C -0.08 -1.16 4.29 -106.25 -0.46 -1.61 16 19 C -0.12 -1.64 9.98 -41.21 -0.41 -2.05 16 20 C -0.22 -2.76 11.23 29.04 0.33 -2.43 16 21 S 0.08 1.00 23.34 -107.50 -2.51 -1.51 16 22 C -0.20 -2.90 10.98 29.04 0.32 -2.58 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.25 5.89 -51.93 -0.31 0.95 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 32 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.09 1.22 7.38 -51.93 -0.38 0.84 16 36 H 0.09 1.17 7.25 -51.93 -0.38 0.80 16 37 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -33.04 335.04 -8.41 -41.45 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.82 Total: 0.23 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.54 Total: -10.11 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.34 Total: -38.57 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.04 -8.41 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.599 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds