Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.52993 * 109.47426 * 120.00165 * 2 1 3 5 5 N 1.46500 * 109.47227 * 65.00280 * 4 2 1 6 6 C 1.46508 * 119.99855 * 270.00176 * 5 4 2 7 7 C 1.50704 * 109.46858 * 269.99621 * 6 5 4 8 8 H 1.08004 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99985 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99867 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47109 * 59.99979 * 11 9 7 13 13 H 1.48496 * 109.47229 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46912 * 300.00234 * 11 9 7 15 15 C 1.34774 * 120.00515 * 90.00025 * 5 4 2 16 16 O 1.21283 * 120.00315 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99429 * 359.97438 * 15 5 4 18 18 C 1.50703 * 109.46698 * 180.02562 * 17 15 5 19 19 C 1.38425 * 122.53762 * 90.00158 * 18 17 15 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97431 * 18 17 15 23 23 H 1.08991 * 109.47362 * 59.99876 * 1 2 3 24 24 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46768 * 299.99418 * 1 2 3 26 26 H 1.09001 * 109.46768 * 240.00582 * 2 1 3 27 27 H 1.09005 * 109.47068 * 180.02562 * 3 2 1 28 28 H 1.08991 * 109.47328 * 300.00144 * 3 2 1 29 29 H 1.09001 * 109.47048 * 60.00754 * 3 2 1 30 30 H 1.08998 * 109.47295 * 305.00167 * 4 2 1 31 31 H 1.09004 * 109.47320 * 185.00078 * 4 2 1 32 32 H 1.08999 * 109.46951 * 29.99220 * 6 5 4 33 33 H 1.08994 * 109.47372 * 150.00041 * 6 5 4 34 34 H 0.97006 * 120.00003 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47203 * 60.00330 * 17 15 5 36 36 H 1.09003 * 109.47454 * 299.99901 * 17 15 5 37 37 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 38 38 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 39 39 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6526 -2.1329 1.1904 6 6 0.3747 -2.5660 1.7612 7 6 0.5719 -2.9410 3.2074 8 1 1.5510 -2.8639 3.6566 9 6 -0.4979 -3.3815 3.9574 10 7 -1.6903 -3.4748 3.4105 11 14 -0.2537 -3.8456 5.7503 12 1 0.2510 -2.6685 6.5019 13 1 -1.5489 -4.2847 6.3288 14 1 0.7311 -4.9529 5.8451 15 6 2.4716 -3.0330 0.6114 16 8 2.1506 -4.2016 0.5624 17 6 3.7859 -2.5873 0.0238 18 6 4.5054 -3.7770 -0.5576 19 6 4.3386 -4.1787 -1.8717 20 6 5.0493 -5.2504 -2.2264 21 16 5.9934 -5.8130 -0.8531 22 6 5.3514 -4.5224 0.1549 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6055 -0.2618 2.1369 31 1 3.1264 -0.6443 1.2950 32 1 -0.3483 -1.7533 1.6919 33 1 0.0044 -3.4298 1.2092 34 1 -2.4430 -3.7851 3.9381 35 1 4.3991 -2.1374 0.8047 36 1 3.6027 -1.8543 -0.7619 37 1 3.6796 -3.6661 -2.5568 38 1 5.0450 -5.7038 -3.2067 39 1 5.6030 -4.3592 1.1924 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = -34.180899 kcal Electronic energy + Delta-G solvation = -20149.971854 eV Core-core repulsion = 17183.168136 eV Total energy + Delta-G solvation = -2966.803717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98205 -38.82098 -37.60048 -35.34610 -34.08904 -32.25512 -30.00467 -28.51388 -27.93612 -26.80743 -25.04312 -23.69564 -21.43286 -20.17775 -19.44200 -18.66177 -18.46514 -17.74301 -17.17545 -16.41148 -16.28030 -15.73802 -15.40350 -14.82849 -14.53941 -14.23385 -13.92315 -13.80009 -13.69687 -13.43079 -13.40563 -13.10974 -12.95044 -12.93526 -12.67263 -12.58216 -12.47004 -12.13903 -12.05678 -11.81515 -11.67121 -11.48977 -11.48394 -10.61148 -10.58984 -9.65626 -9.33089 -9.22917 -8.20442 -6.34815 0.13855 0.81649 1.09751 1.34873 1.39139 1.46172 1.74295 1.91568 2.35398 2.59077 3.08581 3.82118 3.93916 4.03763 4.08140 4.11388 4.27204 4.42945 4.53974 4.58502 4.71852 4.72949 4.78491 4.86852 4.96768 5.08310 5.09504 5.15330 5.18052 5.26920 5.33457 5.48368 5.51175 5.53905 5.58083 5.62864 5.92130 6.11305 6.73258 6.87098 7.30891 7.56790 8.85768 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.005715 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.157805 B = 4898.590226 C = 6464.836600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.109 3.891 5 N -0.599 5.599 6 C 0.262 3.738 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.963 3.037 12 H -0.259 1.259 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.498 3.502 16 O -0.594 6.594 17 C -0.070 4.070 18 C -0.094 4.094 19 C -0.138 4.138 20 C -0.213 4.213 21 S 0.096 5.904 22 C -0.219 4.219 23 H 0.066 0.934 24 H 0.028 0.972 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.035 0.965 33 H -0.012 1.012 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.188 0.812 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.801 7.400 -10.172 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.194 4.194 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.141 3.859 7 C -0.581 4.581 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.788 3.212 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.206 1.206 15 C 0.287 3.713 16 O -0.475 6.475 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.168 4.168 20 C -0.348 4.348 21 S 0.360 5.640 22 C -0.355 4.355 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.205 0.795 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 15.465 5.559 -9.922 19.197 hybrid contribution -1.690 0.413 0.906 1.961 sum 13.775 5.972 -9.016 17.513 Atomic orbital electron populations 1.21899 0.96471 1.00546 1.01604 1.21539 0.95461 0.97834 0.97769 1.21729 1.01910 0.93325 1.02408 1.21880 1.01208 0.79492 0.98783 1.48194 1.20117 1.08622 1.55993 1.18790 0.81320 0.94127 0.91679 1.21737 0.94833 1.44615 0.96886 0.93053 1.25819 0.94744 0.95249 1.03283 1.70046 1.00634 1.47736 1.38429 0.85539 0.77416 0.78926 0.79368 1.18362 1.20379 1.20565 1.21226 0.86705 0.85311 0.78099 1.90651 1.76447 1.20060 1.60306 1.20466 0.91710 0.96564 1.02403 1.18632 0.98292 0.99292 0.94408 1.20237 1.01678 0.98802 0.96087 1.25848 1.03913 1.01587 1.03493 1.83940 1.45836 1.31258 1.02998 1.25623 1.05415 1.00396 1.04033 0.91499 0.95321 0.93368 0.90769 0.90652 0.91556 0.92623 0.91343 0.88013 0.94749 0.99359 0.92523 0.86149 0.85512 0.83381 0.79461 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 8.18 71.98 0.59 -3.84 16 2 C -0.11 -2.62 3.12 -10.79 -0.03 -2.65 16 3 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 4 C 0.11 3.26 4.70 86.38 0.41 3.66 16 5 N -0.60 -25.05 2.28 -826.14 -1.88 -26.94 16 6 C 0.26 14.20 4.23 85.63 0.36 14.56 16 7 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.46 5.46 84.65 0.46 0.92 16 10 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 11 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 15 C 0.50 20.66 7.67 87.66 0.67 21.34 16 16 O -0.59 -31.53 15.61 -3.04 -0.05 -31.58 16 17 C -0.07 -1.93 4.51 29.10 0.13 -1.80 16 18 C -0.09 -2.74 4.29 -20.92 -0.09 -2.82 16 19 C -0.14 -3.68 9.98 21.22 0.21 -3.47 16 20 C -0.21 -5.04 11.23 66.72 0.75 -4.29 16 21 S 0.10 2.36 23.34 -56.49 -1.32 1.04 16 22 C -0.22 -6.25 10.98 66.72 0.73 -5.51 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.03 1.07 5.89 -2.38 -0.01 1.06 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.73 7.30 -2.39 -0.02 1.71 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.10 2.30 6.44 -2.38 -0.02 2.28 16 32 H 0.03 1.88 5.98 -2.39 -0.01 1.86 16 33 H -0.01 -0.75 7.42 -2.39 -0.02 -0.77 16 34 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 35 H 0.12 2.71 7.38 -2.39 -0.02 2.70 16 36 H 0.13 2.69 7.25 -2.39 -0.02 2.67 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.19 3.24 8.06 -2.91 -0.02 3.21 16 39 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -75.82 335.04 5.18 -70.63 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.03 Total: 12.92 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 5.09 Total: -16.96 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.60 Total: -83.65 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.05 Total: -31.58 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Total: -75.82 5.18 -70.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.454 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds