Wall clock time and date at job start Tue Mar 31 2020 05:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38398 * 119.92318 * 2 1 4 4 C 1.38360 * 120.30665 * 180.02562 * 3 2 1 5 5 C 1.37958 * 120.15287 * 0.24290 * 4 3 2 6 6 C 1.39649 * 119.84159 * 359.48601 * 5 4 3 7 7 C 1.47685 * 120.14990 * 180.25747 * 6 5 4 8 8 O 1.21578 * 119.99890 * 144.96892 * 7 6 5 9 9 N 1.34780 * 119.99739 * 324.96682 * 7 6 5 10 10 C 1.36921 * 120.00262 * 2.88191 * 9 7 6 11 11 H 1.08000 * 119.99950 * 324.52341 * 10 9 7 12 12 C 1.38980 * 120.00352 * 144.53287 * 10 9 7 13 13 N 1.31375 * 119.99716 * 352.76864 * 12 10 9 14 14 Si 1.86792 * 120.00071 * 172.76768 * 12 10 9 15 15 H 1.48502 * 109.47325 * 59.99794 * 14 12 10 16 16 H 1.48500 * 109.47233 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.47324 * 299.99834 * 14 12 10 18 18 C 1.39716 * 119.99721 * 182.87731 * 9 7 6 19 19 C 1.38982 * 120.07530 * 289.04958 * 18 9 7 20 20 C 1.38086 * 119.91605 * 179.74287 * 19 18 9 21 21 C 1.38316 * 120.07768 * 0.53035 * 20 19 18 22 22 C 1.38309 * 120.15797 * 359.72390 * 21 20 19 23 23 C 1.38078 * 120.08441 * 0.02562 * 22 21 20 24 24 C 1.37907 * 119.92073 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47773 * 89.99301 * 1 2 3 26 26 H 1.08999 * 109.47358 * 210.00012 * 1 2 3 27 27 H 1.09000 * 109.46898 * 329.99720 * 1 2 3 28 28 H 1.08000 * 119.84798 * 0.02854 * 3 2 1 29 29 H 1.07999 * 119.92027 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.07631 * 179.74294 * 5 4 3 31 31 H 0.96998 * 119.99825 * 185.03207 * 13 12 10 32 32 H 1.07996 * 120.04479 * 359.97438 * 19 18 9 33 33 H 1.07997 * 119.96217 * 180.25316 * 20 19 18 34 34 H 1.07998 * 119.91713 * 179.69816 * 21 20 19 35 35 H 1.08001 * 119.95847 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.04017 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.08113 * 359.95804 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1995 0.0000 4 6 3.5810 1.2088 -0.0005 5 6 4.2819 0.0205 -0.0061 6 6 3.5917 -1.1935 -0.0004 7 6 4.3352 -2.4695 -0.0006 8 8 3.8989 -3.4274 0.6079 9 7 5.4974 -2.5721 -0.6753 10 6 6.0187 -1.4774 -1.3115 11 1 5.3602 -0.7588 -1.7768 12 6 7.3951 -1.2910 -1.3588 13 7 8.1891 -2.0836 -0.6753 14 14 8.1161 0.0864 -2.3943 15 1 7.5936 1.3913 -1.9154 16 1 9.5962 0.0725 -2.2752 17 1 7.7315 -0.1093 -3.8154 18 6 6.1704 -3.7954 -0.7255 19 6 6.7960 -4.2934 0.4113 20 6 7.4557 -5.5054 0.3593 21 6 7.5036 -6.2183 -0.8249 22 6 6.8866 -5.7233 -1.9595 23 6 6.2207 -4.5145 -1.9137 24 6 2.1949 -1.1953 -0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6537 2.1326 0.0005 29 1 4.1134 2.1484 -0.0009 30 1 5.3618 0.0292 -0.0107 31 1 9.1430 -1.9096 -0.6494 32 1 6.7631 -3.7349 1.3350 33 1 7.9386 -5.8949 1.2433 34 1 8.0244 -7.1637 -0.8639 35 1 6.9263 -6.2825 -2.8826 36 1 5.7395 -4.1284 -2.8001 37 1 1.6549 -2.1306 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057538164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:55 Heat of formation + Delta-G solvation = 26.562952 kcal Electronic energy + Delta-G solvation = -21494.489396 eV Core-core repulsion = 18394.875778 eV Total energy + Delta-G solvation = -3099.613617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76626 -38.41073 -36.97563 -34.87120 -32.41321 -31.75948 -30.59050 -29.92074 -28.73063 -26.47961 -25.16121 -23.44940 -21.58054 -21.23397 -21.04979 -19.22332 -17.93921 -16.35636 -15.79767 -15.46445 -15.10323 -14.68813 -14.50786 -14.17991 -13.88638 -13.49425 -13.33176 -12.93120 -12.72396 -12.52811 -12.43926 -11.97919 -11.74312 -11.60454 -11.45129 -11.24610 -11.10833 -10.88092 -10.66286 -10.53015 -10.38749 -10.21314 -9.32018 -8.73431 -8.36162 -8.22517 -7.99262 -7.90797 -7.47360 -6.37089 -4.20120 1.60564 1.92302 2.40408 2.47380 3.06103 3.14105 3.14485 3.70780 3.97483 4.37667 4.60193 4.78106 5.04305 5.19287 5.32008 5.49477 5.61855 5.75980 5.76772 5.83957 5.87725 5.97936 6.00549 6.13048 6.13564 6.40069 6.47922 6.54122 6.59551 6.75707 6.97334 7.00425 7.03918 7.17323 7.27962 7.30686 7.42340 7.52057 7.62906 7.74637 7.98541 8.36345 8.90273 9.26285 9.72173 10.55028 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.007001 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.497691 B = 3998.300167 C = 5307.885481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.112 4.112 3 C -0.114 4.114 4 C -0.139 4.139 5 C -0.073 4.073 6 C -0.092 4.092 7 C 0.513 3.487 8 O -0.587 6.587 9 N -0.402 5.402 10 C -0.355 4.355 11 H 0.101 0.899 12 C 0.050 3.950 13 N -0.847 5.847 14 Si 0.917 3.083 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.220 3.780 19 C -0.061 4.061 20 C -0.124 4.124 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.079 4.079 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.159 0.841 31 H 0.274 0.726 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 3.054 -0.816 6.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C -0.133 4.133 4 C -0.157 4.157 5 C -0.092 4.092 6 C -0.095 4.095 7 C 0.304 3.696 8 O -0.472 6.472 9 N -0.116 5.116 10 C -0.481 4.481 11 H 0.119 0.881 12 C -0.159 4.159 13 N -0.481 5.481 14 Si 0.743 3.257 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.196 1.196 18 C 0.129 3.871 19 C -0.081 4.081 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.099 4.099 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.176 0.824 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.087 2.510 -0.535 5.698 hybrid contribution 0.748 0.857 -0.651 1.310 sum -4.339 3.367 -1.186 5.619 Atomic orbital electron populations 1.20707 0.91620 1.02248 1.01807 1.19684 0.95636 0.93045 1.02805 1.21035 0.94422 0.96883 1.00925 1.21124 0.93943 0.98179 1.02504 1.22196 1.02693 0.90651 0.93611 1.19909 0.93305 0.94034 1.02225 1.18303 0.83185 0.87506 0.80636 1.90663 1.70667 1.39751 1.46114 1.40989 1.18820 1.07170 1.44654 1.19577 0.91088 1.02110 1.35320 0.88120 1.25446 0.96382 0.97753 0.96351 1.69851 1.05346 1.35761 1.37118 0.86144 0.78195 0.80900 0.80487 1.19373 1.20689 1.19594 1.17366 0.92046 0.84939 0.92736 1.20837 0.94713 0.94481 0.98035 1.20752 1.00731 0.95503 0.97320 1.20777 1.02328 0.99858 0.93536 1.20681 0.99806 0.96273 0.97645 1.21009 1.01279 0.94820 0.97630 1.21040 0.93012 0.97526 0.98275 0.91711 0.91815 0.92026 0.86833 0.86337 0.82395 0.91521 0.87398 0.87448 0.87650 0.87452 0.87190 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.11 -1.76 5.87 -104.68 -0.61 -2.37 16 3 C -0.11 -1.71 9.69 -39.48 -0.38 -2.10 16 4 C -0.14 -2.29 10.03 -39.64 -0.40 -2.68 16 5 C -0.07 -1.44 7.67 -39.16 -0.30 -1.74 16 6 C -0.09 -1.97 5.43 -104.97 -0.57 -2.55 16 7 C 0.51 12.80 7.27 -12.40 -0.09 12.71 16 8 O -0.59 -15.94 16.55 5.30 0.09 -15.85 16 9 N -0.40 -10.11 2.62 -60.02 -0.16 -10.27 16 10 C -0.35 -8.63 6.36 -15.00 -0.10 -8.72 16 11 H 0.10 2.36 5.99 -52.49 -0.31 2.05 16 12 C 0.05 1.20 5.30 -17.47 -0.09 1.10 16 13 N -0.85 -21.52 10.88 55.50 0.60 -20.92 16 14 Si 0.92 18.79 29.56 -169.99 -5.03 13.77 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 C 0.22 5.47 2.95 -83.72 -0.25 5.22 16 19 C -0.06 -1.47 8.34 -39.36 -0.33 -1.79 16 20 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 21 C -0.15 -2.82 10.04 -39.53 -0.40 -3.22 16 22 C -0.13 -2.50 10.04 -39.61 -0.40 -2.90 16 23 C -0.13 -2.92 9.87 -39.37 -0.39 -3.31 16 24 C -0.08 -1.50 9.26 -39.16 -0.36 -1.86 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.16 3.34 5.72 -52.49 -0.30 3.04 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.11 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.44 8.06 -52.49 -0.42 2.01 16 37 H 0.12 2.27 8.01 -52.48 -0.42 1.85 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -28.65 317.87 -8.80 -37.45 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.39 Total: 9.13 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -4.70 Total: -18.10 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.45 Total: -31.19 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.65 -8.80 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057538164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.011 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds