Wall clock time and date at job start Tue Mar 31 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38383 * 119.84674 * 2 1 4 4 C 1.37926 * 120.15207 * 180.02562 * 3 2 1 5 5 C 1.39662 * 119.84939 * 359.97438 * 4 3 2 6 6 C 1.47691 * 120.15475 * 179.97438 * 5 4 3 7 7 O 1.21578 * 120.00309 * 26.17380 * 6 5 4 8 8 N 1.34781 * 119.99725 * 206.45513 * 6 5 4 9 9 C 1.36924 * 119.99760 * 183.10616 * 8 6 5 10 10 H 1.07998 * 119.99914 * 225.01732 * 9 8 6 11 11 C 1.38970 * 119.99952 * 45.02023 * 9 8 6 12 12 N 1.31375 * 120.00501 * 23.83646 * 11 9 8 13 13 Si 1.86800 * 119.99882 * 203.83464 * 11 9 8 14 14 H 1.48507 * 109.47106 * 90.00175 * 13 11 9 15 15 H 1.48503 * 109.47516 * 209.99908 * 13 11 9 16 16 H 1.48496 * 109.47386 * 330.00314 * 13 11 9 17 17 C 1.39711 * 119.99807 * 3.10487 * 8 6 5 18 18 C 1.38974 * 120.08214 * 50.44384 * 17 8 6 19 19 C 1.38075 * 119.92111 * 179.78824 * 18 17 8 20 20 C 1.38317 * 120.07811 * 0.46534 * 19 18 17 21 21 C 1.38312 * 120.15675 * 359.78495 * 20 19 18 22 22 C 1.38075 * 120.08530 * 359.97438 * 21 20 19 23 23 C 1.39667 * 119.69340 * 0.24911 * 5 4 3 24 24 C 1.37930 * 119.84355 * 359.51877 * 23 5 4 25 25 H 1.08995 * 109.47607 * 89.99742 * 1 2 3 26 26 H 1.09003 * 109.46741 * 210.00019 * 1 2 3 27 27 H 1.09007 * 109.46731 * 329.99540 * 1 2 3 28 28 H 1.08001 * 119.91966 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.07711 * 179.97438 * 4 3 2 30 30 H 0.97000 * 120.00398 * 184.92524 * 12 11 9 31 31 H 1.07999 * 120.03961 * 0.02562 * 18 17 8 32 32 H 1.08003 * 119.96532 * 180.25263 * 19 18 17 33 33 H 1.08001 * 119.92090 * 179.76895 * 20 19 18 34 34 H 1.08001 * 119.95413 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.04405 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.07555 * 179.72628 * 23 5 4 37 37 H 1.07994 * 119.92651 * 180.20841 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5749 1.2076 -0.0005 5 6 4.2765 0.0000 -0.0005 6 6 5.7534 0.0000 -0.0017 7 8 6.3617 0.9451 0.4618 8 7 6.4269 -1.0453 -0.5217 9 6 7.7946 -1.0746 -0.4656 10 1 8.3648 -1.3600 -1.3373 11 6 8.4491 -0.7373 0.7130 12 7 7.8262 -0.8457 1.8645 13 14 10.2148 -0.1297 0.6598 14 1 10.2255 1.3490 0.5225 15 1 10.9090 -0.5153 1.9147 16 1 10.9135 -0.7395 -0.4999 17 6 5.7293 -2.0987 -1.1180 18 6 4.7617 -1.8370 -2.0807 19 6 4.0774 -2.8809 -2.6710 20 6 4.3471 -4.1853 -2.2983 21 6 5.3057 -4.4492 -1.3368 22 6 5.9975 -3.4107 -0.7458 23 6 3.5750 -1.2077 -0.0053 24 6 2.1957 -1.2003 0.0001 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6519 2.1334 -0.0004 29 1 4.1112 2.1451 -0.0010 30 1 8.2570 -0.5434 2.6794 31 1 4.5481 -0.8185 -2.3695 32 1 3.3282 -2.6785 -3.4221 33 1 3.8077 -4.9997 -2.7590 34 1 5.5133 -5.4690 -1.0480 35 1 6.7456 -3.6175 0.0052 36 1 4.1113 -2.1451 -0.0098 37 1 1.6519 -2.1333 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057538165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:58 Heat of formation + Delta-G solvation = 37.656987 kcal Electronic energy + Delta-G solvation = -21890.995865 eV Core-core repulsion = 18791.863321 eV Total energy + Delta-G solvation = -3099.132544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25683 -38.23194 -37.41581 -34.37049 -32.80507 -31.75093 -30.67153 -30.05826 -28.65866 -27.25139 -24.85425 -22.53662 -22.18489 -21.64189 -21.18560 -19.58883 -17.40520 -17.15883 -15.63036 -15.29454 -15.14186 -14.82389 -14.42982 -14.21576 -13.73389 -13.62956 -13.52176 -13.20034 -12.97615 -12.72131 -12.59323 -12.10082 -12.06043 -11.67155 -11.38815 -11.17978 -10.95945 -10.83847 -10.79194 -10.50879 -10.42643 -10.31643 -9.09058 -8.72720 -8.56044 -8.40725 -8.27147 -7.95301 -7.06674 -6.36189 -4.09702 1.45259 1.75315 2.00411 2.13302 3.24922 3.32798 3.35448 3.78912 4.15671 4.38566 4.60954 4.70921 5.10194 5.14283 5.18561 5.38138 5.47356 5.50426 5.54485 5.58684 5.66864 5.76466 5.87453 5.93719 6.05430 6.08546 6.22214 6.34469 6.44786 6.52127 6.65115 6.80274 6.92214 6.96955 7.04267 7.12584 7.26277 7.37864 7.44599 7.57467 8.12361 8.75604 8.90234 9.36322 9.93101 10.70544 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.007433 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.134149 B = 3766.157442 C = 5054.964575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.073 4.073 5 C -0.114 4.114 6 C 0.529 3.471 7 O -0.521 6.521 8 N -0.399 5.399 9 C -0.355 4.355 10 H 0.088 0.912 11 C 0.080 3.920 12 N -0.828 5.828 13 Si 0.914 3.086 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.172 3.828 18 C -0.152 4.152 19 C -0.104 4.104 20 C -0.165 4.165 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.079 4.079 24 C -0.132 4.132 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.271 0.729 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 -3.254 -5.038 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.155 4.155 4 C -0.093 4.093 5 C -0.118 4.118 6 C 0.319 3.681 7 O -0.398 6.398 8 N -0.112 5.112 9 C -0.480 4.480 10 H 0.105 0.895 11 C -0.132 4.132 12 N -0.460 5.460 13 Si 0.740 3.260 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.194 1.194 17 C 0.076 3.924 18 C -0.173 4.173 19 C -0.123 4.123 20 C -0.184 4.184 21 C -0.124 4.124 22 C -0.158 4.158 23 C -0.098 4.098 24 C -0.150 4.150 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.064 -2.717 -4.517 12.255 hybrid contribution 0.841 0.247 0.153 0.890 sum -10.223 -2.470 -4.364 11.387 Atomic orbital electron populations 1.20762 0.91700 1.02356 1.01909 1.19950 0.95597 0.93327 0.99595 1.20835 0.93830 0.97217 1.03576 1.21158 0.93607 0.97579 0.96907 1.20353 0.94795 0.93831 1.02806 1.18127 0.85525 0.82564 0.81901 1.90600 1.69327 1.34082 1.45802 1.41009 1.05782 1.13321 1.51108 1.19095 0.78668 1.52909 0.97278 0.89461 1.25303 0.99594 0.94266 0.94074 1.69901 1.40069 1.37787 0.98203 0.86178 0.82330 0.79948 0.77583 1.19876 1.21083 1.19432 1.18323 0.91429 0.89560 0.93078 1.21112 0.99491 0.99284 0.97419 1.20747 0.99479 0.92459 0.99570 1.20846 1.00648 0.96183 1.00705 1.20930 0.96397 0.98302 0.96805 1.21206 1.02003 0.91491 1.01132 1.21986 0.94240 0.98515 0.95030 1.20856 0.93945 0.97123 1.03063 0.91480 0.91806 0.91885 0.86352 0.85574 0.91917 0.86743 0.86939 0.87164 0.86796 0.85317 0.84389 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.00 36.00 0.36 -0.81 16 2 C -0.08 -1.23 5.89 -104.52 -0.62 -1.84 16 3 C -0.14 -2.12 9.68 -39.64 -0.38 -2.51 16 4 C -0.07 -1.40 9.59 -39.16 -0.38 -1.78 16 5 C -0.11 -2.48 4.60 -104.97 -0.48 -2.96 16 6 C 0.53 13.85 6.58 -12.40 -0.08 13.77 16 7 O -0.52 -15.41 14.87 5.30 0.08 -15.33 16 8 N -0.40 -10.25 2.64 -60.02 -0.16 -10.41 16 9 C -0.35 -9.71 8.58 -15.01 -0.13 -9.84 16 10 H 0.09 2.33 7.94 -52.49 -0.42 1.92 16 11 C 0.08 2.21 4.20 -17.48 -0.07 2.14 16 12 N -0.83 -24.00 12.35 55.50 0.69 -23.31 16 13 Si 0.91 21.55 29.62 -169.99 -5.03 16.51 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C 0.17 3.72 3.39 -83.72 -0.28 3.44 16 18 C -0.15 -2.86 6.11 -39.37 -0.24 -3.10 16 19 C -0.10 -1.62 10.02 -39.61 -0.40 -2.02 16 20 C -0.16 -2.44 10.04 -39.53 -0.40 -2.84 16 21 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 22 C -0.14 -2.77 8.87 -39.36 -0.35 -3.12 16 23 C -0.08 -1.53 6.60 -39.16 -0.26 -1.79 16 24 C -0.13 -2.10 9.68 -39.64 -0.38 -2.48 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.06 0.60 8.08 -51.92 -0.42 0.18 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.13 2.40 7.87 -52.48 -0.41 1.99 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.11 2.20 7.22 -52.49 -0.38 1.82 16 32 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.13 2.80 7.94 -52.49 -0.42 2.39 16 36 H 0.14 2.80 4.49 -52.49 -0.24 2.57 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -31.44 313.03 -8.57 -40.01 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.37 Total: 5.67 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -4.49 Total: -17.86 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.53 Total: -33.72 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.44 -8.57 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057538165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.666 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds