Wall clock time and date at job start Tue Mar 31 2020 05:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38383 * 119.84674 * 2 1 4 4 C 1.37926 * 120.15207 * 180.02562 * 3 2 1 5 5 C 1.39662 * 119.84939 * 359.97438 * 4 3 2 6 6 C 1.47691 * 120.15475 * 179.97438 * 5 4 3 7 7 O 1.21578 * 120.00309 * 26.17380 * 6 5 4 8 8 N 1.34781 * 119.99725 * 206.45513 * 6 5 4 9 9 C 1.36924 * 119.99760 * 183.10616 * 8 6 5 10 10 H 1.07998 * 119.99914 * 225.01732 * 9 8 6 11 11 C 1.38970 * 119.99952 * 45.02023 * 9 8 6 12 12 N 1.31375 * 120.00501 * 23.83646 * 11 9 8 13 13 Si 1.86800 * 119.99882 * 203.83464 * 11 9 8 14 14 H 1.48507 * 109.47106 * 90.00175 * 13 11 9 15 15 H 1.48503 * 109.47516 * 209.99908 * 13 11 9 16 16 H 1.48496 * 109.47386 * 330.00314 * 13 11 9 17 17 C 1.39711 * 119.99807 * 3.10487 * 8 6 5 18 18 C 1.38974 * 120.08214 * 50.44384 * 17 8 6 19 19 C 1.38075 * 119.92111 * 179.78824 * 18 17 8 20 20 C 1.38317 * 120.07811 * 0.46534 * 19 18 17 21 21 C 1.38312 * 120.15675 * 359.78495 * 20 19 18 22 22 C 1.38075 * 120.08530 * 359.97438 * 21 20 19 23 23 C 1.39667 * 119.69340 * 0.24911 * 5 4 3 24 24 C 1.37930 * 119.84355 * 359.51877 * 23 5 4 25 25 H 1.08995 * 109.47607 * 89.99742 * 1 2 3 26 26 H 1.09003 * 109.46741 * 210.00019 * 1 2 3 27 27 H 1.09007 * 109.46731 * 329.99540 * 1 2 3 28 28 H 1.08001 * 119.91966 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.07711 * 179.97438 * 4 3 2 30 30 H 0.97000 * 120.00398 * 184.92524 * 12 11 9 31 31 H 1.07999 * 120.03961 * 0.02562 * 18 17 8 32 32 H 1.08003 * 119.96532 * 180.25263 * 19 18 17 33 33 H 1.08001 * 119.92090 * 179.76895 * 20 19 18 34 34 H 1.08001 * 119.95413 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.04405 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.07555 * 179.72628 * 23 5 4 37 37 H 1.07994 * 119.92651 * 180.20841 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5749 1.2076 -0.0005 5 6 4.2765 0.0000 -0.0005 6 6 5.7534 0.0000 -0.0017 7 8 6.3617 0.9451 0.4618 8 7 6.4269 -1.0453 -0.5217 9 6 7.7946 -1.0746 -0.4656 10 1 8.3648 -1.3600 -1.3373 11 6 8.4491 -0.7373 0.7130 12 7 7.8262 -0.8457 1.8645 13 14 10.2148 -0.1297 0.6598 14 1 10.2255 1.3490 0.5225 15 1 10.9090 -0.5153 1.9147 16 1 10.9135 -0.7395 -0.4999 17 6 5.7293 -2.0987 -1.1180 18 6 4.7617 -1.8370 -2.0807 19 6 4.0774 -2.8809 -2.6710 20 6 4.3471 -4.1853 -2.2983 21 6 5.3057 -4.4492 -1.3368 22 6 5.9975 -3.4107 -0.7458 23 6 3.5750 -1.2077 -0.0053 24 6 2.1957 -1.2003 0.0001 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6519 2.1334 -0.0004 29 1 4.1112 2.1451 -0.0010 30 1 8.2570 -0.5434 2.6794 31 1 4.5481 -0.8185 -2.3695 32 1 3.3282 -2.6785 -3.4221 33 1 3.8077 -4.9997 -2.7590 34 1 5.5133 -5.4690 -1.0480 35 1 6.7456 -3.6175 0.0052 36 1 4.1113 -2.1451 -0.0098 37 1 1.6519 -2.1333 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057538165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:57 Heat of formation + Delta-G solvation = 19.933261 kcal Electronic energy + Delta-G solvation = -21891.764423 eV Core-core repulsion = 18791.863321 eV Total energy + Delta-G solvation = -3099.901102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86283 -39.60093 -39.11679 -36.21466 -34.45126 -33.34761 -32.06780 -31.44161 -30.22859 -28.59829 -26.64782 -24.06112 -23.57402 -23.04280 -22.63046 -21.25190 -19.21852 -18.79311 -17.11970 -17.01293 -16.73527 -16.21533 -16.06083 -15.80181 -15.40428 -14.98299 -14.83662 -14.58949 -14.37879 -14.21118 -14.14825 -13.64036 -13.41196 -13.00329 -12.93340 -12.82778 -12.64825 -12.41488 -12.25304 -12.06723 -11.91634 -11.79706 -11.03458 -10.51285 -10.21273 -10.05594 -9.62990 -9.40387 -8.79455 -8.41544 -6.21119 0.02175 0.39107 0.59791 0.73958 1.30258 1.39697 1.44768 2.13223 2.29265 2.84932 2.94133 3.02668 3.22914 3.86836 3.96121 4.09953 4.10727 4.17453 4.24569 4.42174 4.51018 4.54441 4.70123 4.80877 4.85741 4.87516 4.95205 5.02577 5.16570 5.25995 5.30847 5.32843 5.45687 5.57336 5.65476 5.68032 5.74105 5.77641 6.02364 6.09584 6.23679 6.78964 6.94338 7.40897 8.01144 8.63990 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.007433 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.134149 B = 3766.157442 C = 5054.964575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.066 4.066 3 C -0.130 4.130 4 C -0.088 4.088 5 C -0.150 4.150 6 C 0.514 3.486 7 O -0.582 6.582 8 N -0.415 5.415 9 C -0.373 4.373 10 H 0.081 0.919 11 C 0.033 3.967 12 N -0.869 5.869 13 Si 0.973 3.027 14 H -0.287 1.287 15 H -0.274 1.274 16 H -0.250 1.250 17 C 0.137 3.863 18 C -0.150 4.150 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.157 4.157 23 C -0.084 4.084 24 C -0.127 4.127 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.110 0.890 30 H 0.267 0.733 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 -5.309 -7.000 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.066 4.066 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.153 4.153 6 C 0.306 3.694 7 O -0.465 6.465 8 N -0.128 5.128 9 C -0.499 4.499 10 H 0.099 0.901 11 C -0.175 4.175 12 N -0.502 5.502 13 Si 0.796 3.204 14 H -0.213 1.213 15 H -0.199 1.199 16 H -0.174 1.174 17 C 0.044 3.956 18 C -0.171 4.171 19 C -0.111 4.111 20 C -0.156 4.156 21 C -0.117 4.117 22 C -0.177 4.177 23 C -0.103 4.103 24 C -0.145 4.145 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.077 -4.842 -6.526 17.127 hybrid contribution 1.834 0.764 0.621 2.081 sum -13.243 -4.078 -5.905 15.062 Atomic orbital electron populations 1.20872 0.87835 1.04052 1.03723 1.20487 0.98135 0.92074 0.95945 1.21191 0.92072 0.99505 1.02007 1.21212 0.95430 0.96136 0.97992 1.20120 0.92185 0.96037 1.07005 1.18920 0.87726 0.81930 0.80796 1.90516 1.71025 1.36243 1.48676 1.41104 1.05554 1.14641 1.51501 1.19249 0.80396 1.53181 0.97033 0.90095 1.26148 1.03393 0.94253 0.93662 1.69993 1.41867 1.39743 0.98606 0.85278 0.78128 0.78356 0.78609 1.21320 1.19891 1.17384 1.18522 0.93601 0.88966 0.94537 1.21084 0.99098 0.99914 0.96994 1.21177 0.98985 0.91805 0.99145 1.21379 0.98711 0.97107 0.98396 1.21255 0.95633 0.98501 0.96345 1.21127 1.02560 0.92277 1.01752 1.21851 0.95729 0.96784 0.95916 1.21200 0.92322 0.99253 1.01714 0.89333 0.90162 0.90302 0.82928 0.87217 0.92402 0.88010 0.83046 0.82306 0.83706 0.88676 0.85924 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.00 71.24 0.71 -0.94 16 2 C -0.07 -1.67 5.89 -19.80 -0.12 -1.78 16 3 C -0.13 -3.77 9.68 22.23 0.22 -3.55 16 4 C -0.09 -3.50 9.59 22.54 0.22 -3.28 16 5 C -0.15 -6.87 4.60 -20.09 -0.09 -6.96 16 6 C 0.51 29.26 6.58 86.74 0.57 29.83 16 7 O -0.58 -37.80 14.87 -3.96 -0.06 -37.86 16 8 N -0.41 -22.98 2.64 -462.08 -1.22 -24.20 16 9 C -0.37 -22.06 8.58 84.07 0.72 -21.34 16 10 H 0.08 4.68 7.94 -2.91 -0.02 4.65 16 11 C 0.03 1.96 4.20 84.94 0.36 2.32 16 12 N -0.87 -54.34 12.35 21.66 0.27 -54.07 16 13 Si 0.97 47.00 29.62 68.60 2.03 49.03 16 14 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 17 C 0.14 6.20 3.39 38.24 0.13 6.33 16 18 C -0.15 -5.60 6.11 22.41 0.14 -5.47 16 19 C -0.09 -2.53 10.02 22.25 0.22 -2.30 16 20 C -0.14 -3.37 10.04 22.31 0.22 -3.15 16 21 C -0.10 -2.96 10.04 22.25 0.22 -2.74 16 22 C -0.16 -6.49 8.87 22.41 0.20 -6.30 16 23 C -0.08 -3.25 6.60 22.54 0.15 -3.10 16 24 C -0.13 -3.65 9.68 22.23 0.22 -3.44 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.11 4.55 7.87 -2.91 -0.02 4.52 16 30 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.10 4.01 7.22 -2.91 -0.02 3.99 16 32 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.09 4.50 7.94 -2.91 -0.02 4.47 16 36 H 0.12 5.08 4.49 -2.91 -0.01 5.06 16 37 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -78.59 313.03 6.18 -72.41 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.07 Total: 20.56 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 4.08 Total: -25.86 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -0.95 Total: -78.28 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.06 Total: -37.86 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -78.59 6.18 -72.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057538165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.341 kcal (2) G-P(sol) polarization free energy of solvation -78.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds