Wall clock time and date at job start Tue Mar 31 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48497 * 109.46927 * 239.99589 * 3 2 1 5 5 H 1.48500 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99935 * 3 2 1 7 7 C 1.40225 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00407 * 197.86594 * 7 2 1 9 9 C 1.41112 * 119.99960 * 17.87495 * 7 2 1 10 10 C 1.40883 * 120.10582 * 204.63640 * 9 7 2 11 11 C 1.36316 * 119.89350 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10890 * 359.97438 * 11 10 9 13 13 C 1.47636 * 119.89923 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99942 * 0.28588 * 13 12 11 15 15 N 1.34774 * 120.00313 * 180.02562 * 13 12 11 16 16 C 1.46504 * 120.00264 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47171 * 180.02562 * 16 15 13 18 18 C 1.38238 * 120.00053 * 269.73115 * 17 16 15 19 19 C 1.38228 * 119.99946 * 179.76847 * 18 17 16 20 20 C 1.38242 * 119.99961 * 0.50412 * 19 18 17 21 21 C 1.38231 * 119.99839 * 359.74661 * 20 19 18 22 22 C 1.38230 * 119.99764 * 90.00179 * 17 16 15 23 23 C 1.40015 * 120.20499 * 0.28338 * 12 11 10 24 24 C 1.36319 * 120.11118 * 359.43792 * 23 12 11 25 25 H 0.97006 * 119.99571 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.05449 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.94527 * 179.97438 * 11 10 9 28 28 H 0.97005 * 119.99966 * 0.02562 * 15 13 12 29 29 H 1.09002 * 109.47172 * 300.00808 * 16 15 13 30 30 H 1.09007 * 109.46514 * 60.00401 * 16 15 13 31 31 H 1.07999 * 119.99730 * 359.97438 * 18 17 16 32 32 H 1.07999 * 120.00794 * 180.23008 * 19 18 17 33 33 H 1.07997 * 120.00158 * 179.72641 * 20 19 18 34 34 H 1.08005 * 120.00134 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.00135 * 0.02562 * 22 17 16 36 36 H 1.08006 * 119.94564 * 179.69849 * 23 12 11 37 37 H 1.07990 * 120.05627 * 180.27301 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6963 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2875 9 6 1.3531 -2.4071 -0.3740 10 6 1.8265 -3.6494 0.0922 11 6 1.1913 -4.7990 -0.2727 12 6 0.0697 -4.7465 -1.1091 13 6 -0.6151 -5.9943 -1.5011 14 8 -0.2080 -7.0650 -1.0933 15 7 -1.6946 -5.9463 -2.3065 16 6 -2.3745 -7.1845 -2.6950 17 6 -3.5406 -6.8572 -3.5916 18 6 -4.7884 -6.6225 -3.0449 19 6 -5.8570 -6.3177 -3.8670 20 6 -5.6802 -6.2577 -5.2368 21 6 -4.4336 -6.4975 -5.7838 22 6 -3.3638 -6.7973 -4.9613 23 6 -0.4013 -3.5146 -1.5794 24 6 0.2239 -2.3593 -1.2153 25 1 -0.4850 0.8401 -0.0004 26 1 2.6919 -3.6910 0.7371 27 1 1.5537 -5.7518 0.0839 28 1 -2.0215 -5.0918 -2.6290 29 1 -1.6767 -7.8303 -3.2280 30 1 -2.7344 -7.6966 -1.8025 31 1 -4.9276 -6.6741 -1.9751 32 1 -6.8311 -6.1306 -3.4397 33 1 -6.5160 -6.0239 -5.8794 34 1 -4.2955 -6.4511 -6.8540 35 1 -2.3900 -6.9854 -5.3888 36 1 -1.2640 -3.4794 -2.2284 37 1 -0.1428 -1.4093 -1.5750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:43 Heat of formation + Delta-G solvation = -4.824547 kcal Electronic energy + Delta-G solvation = -20031.532231 eV Core-core repulsion = 16930.557550 eV Total energy + Delta-G solvation = -3100.974682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.63700 -38.74876 -37.08565 -34.50845 -33.86903 -31.46176 -31.02513 -29.99188 -29.43344 -26.65553 -25.15554 -22.69258 -22.02355 -21.30834 -20.82472 -19.60907 -17.54096 -17.32771 -16.47591 -15.64193 -15.44606 -15.29656 -15.01268 -14.12713 -14.03101 -13.81368 -13.52472 -13.29179 -12.91605 -12.80595 -12.56293 -12.32851 -12.07873 -11.89641 -11.36450 -11.26852 -11.15561 -11.13142 -10.98285 -10.64094 -10.07001 -9.55844 -9.35183 -9.23137 -9.05531 -8.74330 -8.60053 -7.71885 -7.54191 -7.03604 -4.60421 1.14637 1.27174 2.23871 2.92335 2.94195 2.98301 3.03996 3.52762 3.73606 3.87355 4.10010 4.56539 4.64543 4.75431 4.87128 4.99685 5.31503 5.36801 5.56630 5.65203 5.65756 5.88820 5.94185 6.05269 6.13078 6.31322 6.32319 6.36560 6.52203 6.77027 6.82641 6.84718 6.92468 7.05768 7.13715 7.43613 7.65650 7.79542 7.85957 8.07162 8.24697 8.39797 8.63016 8.75435 9.07529 9.88362 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.003520 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.897503 B = 7953.725712 C = 8919.169544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.021 4.021 12 C -0.284 4.284 13 C 0.572 3.428 14 O -0.576 6.576 15 N -0.738 5.738 16 C 0.163 3.837 17 C -0.101 4.101 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.062 4.062 24 C -0.178 4.178 25 H 0.287 0.713 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.398 0.602 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 -5.065 -8.510 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.289 4.289 13 C 0.366 3.634 14 O -0.458 6.458 15 N -0.391 5.391 16 C 0.040 3.960 17 C -0.101 4.101 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.081 4.081 24 C -0.198 4.198 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.234 0.766 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.336 -5.678 -8.199 13.661 hybrid contribution -0.008 1.231 -0.158 1.241 sum -9.344 -4.447 -8.357 13.301 Atomic orbital electron populations 1.69740 1.07917 1.30148 1.31669 1.26098 0.94808 1.01871 0.91887 0.86261 0.80209 0.79447 0.80350 1.18472 1.20046 1.18656 1.19825 0.98430 0.91219 1.37630 0.89734 1.17781 0.90362 0.92158 0.87116 1.20716 1.04637 0.92647 1.07892 1.20360 0.92887 0.97149 0.93669 1.18885 1.04540 0.90989 1.14473 1.18613 0.78579 0.89656 0.76504 1.90634 1.66695 1.31744 1.56765 1.45964 1.31623 1.08741 1.52787 1.20051 0.91137 0.87912 0.96927 1.20020 0.94937 1.00968 0.94211 1.21156 0.92300 0.98412 1.00129 1.21163 0.98919 1.00265 0.93755 1.21186 0.97344 0.99874 0.95252 1.21158 0.93004 1.00158 0.99821 1.21147 0.99112 0.98826 0.92956 1.20479 0.97353 0.92603 0.97704 1.20974 0.99937 0.96889 1.01961 0.90176 0.88374 0.88096 0.76629 0.91235 0.91217 0.85770 0.85982 0.86158 0.86001 0.85796 0.89375 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.50 10.95 55.56 0.61 -17.89 16 2 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 3 Si 0.91 17.25 29.60 -169.99 -5.03 12.22 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.44 -11.05 9.04 -37.75 -0.34 -11.39 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 10 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.28 -6.57 5.89 -104.73 -0.62 -7.18 16 13 C 0.57 12.30 7.76 -12.43 -0.10 12.21 16 14 O -0.58 -13.84 16.32 5.29 0.09 -13.75 16 15 N -0.74 -12.64 5.50 -62.49 -0.34 -12.99 16 16 C 0.16 2.37 5.80 -5.19 -0.03 2.34 16 17 C -0.10 -1.24 5.25 -104.63 -0.55 -1.79 16 18 C -0.10 -1.15 9.70 -39.59 -0.38 -1.53 16 19 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 23 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 24 C -0.18 -4.39 8.64 -39.27 -0.34 -4.73 16 25 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 26 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 27 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 28 H 0.40 6.34 6.47 -40.82 -0.26 6.07 16 29 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 30 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.09 1.70 6.37 -52.48 -0.33 1.36 16 37 H 0.12 2.98 6.15 -52.49 -0.32 2.66 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -28.53 322.39 -9.82 -38.36 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.25 Total: 12.05 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -5.75 Total: -22.85 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.26 Total: -30.88 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.53 -9.82 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.530 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds