Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38309 * 119.96594 * 2 1 4 4 C 1.38265 * 120.14865 * 180.02562 * 3 2 1 5 5 C 1.38119 * 120.07520 * 0.24053 * 4 3 2 6 6 C 1.38879 * 119.92648 * 359.51098 * 5 4 3 7 7 N 1.39807 * 120.07864 * 180.23082 * 6 5 4 8 8 C 1.34774 * 120.00245 * 213.16696 * 7 6 5 9 9 O 1.21601 * 120.00339 * 5.19969 * 8 7 6 10 10 C 1.47602 * 119.99787 * 185.19236 * 8 7 6 11 11 C 1.40035 * 119.89489 * 359.73236 * 10 8 7 12 12 C 1.36308 * 120.10129 * 179.71230 * 11 10 8 13 13 C 1.40905 * 119.89234 * 0.55989 * 12 11 10 14 14 C 1.41085 * 120.10050 * 179.69429 * 13 12 11 15 15 H 1.08000 * 119.99962 * 205.01841 * 14 13 12 16 16 C 1.40229 * 120.00411 * 25.01557 * 14 13 12 17 17 N 1.30650 * 119.99574 * 17.54005 * 16 14 13 18 18 Si 1.86796 * 120.00244 * 197.54734 * 16 14 13 19 19 H 1.48496 * 109.47485 * 94.68247 * 18 16 14 20 20 H 1.48504 * 109.47095 * 214.68007 * 18 16 14 21 21 H 1.48501 * 109.47098 * 334.67625 * 18 16 14 22 22 C 1.40896 * 119.79418 * 359.71785 * 13 12 11 23 23 C 1.36304 * 119.89831 * 359.97438 * 22 13 12 24 24 C 1.38089 * 119.96113 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47355 * 89.99487 * 1 2 3 26 26 H 1.08996 * 109.47150 * 209.99244 * 1 2 3 27 27 H 1.09003 * 109.46843 * 329.99290 * 1 2 3 28 28 H 1.07998 * 119.92588 * 0.02562 * 3 2 1 29 29 H 1.08010 * 119.96340 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.03762 * 179.74760 * 5 4 3 31 31 H 0.96998 * 119.99448 * 33.17672 * 7 6 5 32 32 H 1.07994 * 119.95022 * 359.97438 * 11 10 8 33 33 H 1.07996 * 120.05615 * 180.24958 * 12 11 10 34 34 H 0.96996 * 119.99451 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.05168 * 179.97438 * 22 13 12 36 36 H 1.07998 * 119.95117 * 179.97438 * 23 22 13 37 37 H 1.07993 * 120.03588 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2764 0.0096 -0.0061 6 6 3.5859 -1.1954 -0.0009 7 7 4.2872 -2.4048 -0.0016 8 6 3.7774 -3.4791 -0.6359 9 8 2.7556 -3.3728 -1.2866 10 6 4.4593 -4.7847 -0.5409 11 6 5.6390 -4.9033 0.2043 12 6 6.2690 -6.1083 0.2997 13 6 5.7380 -7.2328 -0.3627 14 6 6.3900 -8.4807 -0.2722 15 1 6.2568 -9.2173 -1.0507 16 6 7.2112 -8.7646 0.8284 17 7 7.1145 -8.0491 1.9173 18 14 8.4435 -10.1655 0.7377 19 1 9.7681 -9.6339 0.3280 20 1 8.5595 -10.8098 2.0706 21 1 7.9825 -11.1666 -0.2575 22 6 4.5540 -7.1071 -1.1161 23 6 3.9274 -5.8996 -1.2006 24 6 2.1966 -1.1964 -0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5140 28 1 1.6560 2.1325 0.0004 29 1 4.1169 2.1401 -0.0010 30 1 5.3564 0.0138 -0.0106 31 1 5.1407 -2.4708 0.4546 32 1 6.0479 -4.0398 0.7077 33 1 7.1766 -6.1998 0.8779 34 1 7.6823 -8.2457 2.6787 35 1 4.1435 -7.9662 -1.6258 36 1 3.0201 -5.8021 -1.7782 37 1 1.6566 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058243020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -4.302934 kcal Electronic energy + Delta-G solvation = -20214.640635 eV Core-core repulsion = 17113.688572 eV Total energy + Delta-G solvation = -3100.952063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.11459 -38.42510 -37.12887 -34.53098 -33.96130 -32.27292 -30.66141 -29.54041 -29.09754 -26.85701 -25.97144 -23.11090 -21.82945 -21.27279 -20.75578 -19.62202 -17.62647 -17.28421 -16.46447 -15.99915 -15.49401 -15.07585 -14.37682 -14.09281 -14.00324 -13.68323 -13.52385 -13.25379 -12.93430 -12.84086 -12.26031 -12.20780 -12.05514 -11.96409 -11.46769 -11.44756 -11.32358 -11.04561 -10.99625 -10.73707 -10.10773 -9.96152 -9.63992 -9.43632 -9.09219 -8.54358 -7.88572 -7.78260 -7.59603 -7.11486 -4.68716 1.44119 1.56544 2.16168 2.86504 2.91265 2.94401 2.96351 3.59959 3.66129 3.69613 4.02042 4.48948 4.92914 4.97767 5.28210 5.36612 5.47518 5.48397 5.65506 5.70599 5.75303 5.85490 5.94981 6.06745 6.23163 6.24109 6.52019 6.58252 6.69085 6.71745 6.75093 6.83612 6.94844 7.04410 7.31185 7.35672 7.55655 7.68675 7.77851 7.98184 8.04607 8.31475 8.54543 8.66412 8.87650 9.80280 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038361 B = 0.003243 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.736369 B = 8632.972800 C = 9062.366564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.151 4.151 4 C -0.098 4.098 5 C -0.164 4.164 6 C 0.171 3.829 7 N -0.684 5.684 8 C 0.570 3.430 9 O -0.555 6.555 10 C -0.289 4.289 11 C -0.062 4.062 12 C -0.177 4.177 13 C 0.130 3.870 14 C -0.438 4.438 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.768 5.768 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.238 4.238 23 C -0.018 4.018 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.408 0.592 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.288 0.712 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 10.991 0.709 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.170 4.170 4 C -0.117 4.117 5 C -0.185 4.185 6 C 0.075 3.925 7 N -0.328 5.328 8 C 0.367 3.633 9 O -0.435 6.435 10 C -0.293 4.293 11 C -0.081 4.081 12 C -0.196 4.196 13 C 0.126 3.874 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.391 5.391 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.258 4.258 23 C -0.037 4.037 24 C -0.146 4.146 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.245 0.755 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.092 10.978 0.511 11.416 hybrid contribution 1.134 -0.616 0.374 1.343 sum -1.958 10.362 0.885 10.582 Atomic orbital electron populations 1.20764 0.91305 1.02454 1.02300 1.19783 0.95972 0.92688 0.98643 1.20886 0.94172 0.97193 1.04736 1.20827 0.94118 0.97140 0.99595 1.20882 0.99719 0.91362 1.06528 1.17844 0.91598 0.85636 0.97438 1.43663 1.24591 1.09159 1.55394 1.18747 0.83857 0.83830 0.76837 1.90652 1.25568 1.85295 1.42029 1.18785 1.02917 0.92172 1.15448 1.20470 0.94233 0.96858 0.96580 1.20978 1.01880 0.91361 1.05375 1.17810 0.88854 0.92878 0.87844 1.19909 1.21640 1.00170 1.04844 0.89534 1.26133 0.96529 0.97908 0.94283 1.69741 1.31573 1.35553 1.02265 0.86163 0.80416 0.80532 0.79009 1.18935 1.19906 1.18166 1.20721 0.98671 0.96512 1.09868 1.20356 0.97021 0.91759 0.94603 1.21129 0.92723 0.98735 1.02025 0.91196 0.91544 0.91770 0.86501 0.86124 0.86036 0.75508 0.89303 0.86107 0.90103 0.88229 0.87978 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 36.00 0.36 -0.88 16 2 C -0.07 -0.98 5.88 -104.65 -0.62 -1.60 16 3 C -0.15 -1.86 9.70 -39.55 -0.38 -2.25 16 4 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 5 C -0.16 -2.27 9.96 -39.39 -0.39 -2.66 16 6 C 0.17 2.84 6.29 -83.73 -0.53 2.31 16 7 N -0.68 -12.02 5.28 -10.79 -0.06 -12.07 16 8 C 0.57 12.09 7.50 -12.44 -0.09 12.00 16 9 O -0.55 -12.94 13.97 5.28 0.07 -12.87 16 10 C -0.29 -6.48 5.89 -104.73 -0.62 -7.10 16 11 C -0.06 -1.35 9.47 -39.60 -0.37 -1.72 16 12 C -0.18 -4.23 8.63 -39.27 -0.34 -4.57 16 13 C 0.13 3.22 5.57 -106.80 -0.60 2.63 16 14 C -0.44 -10.64 9.04 -37.75 -0.34 -10.99 16 15 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 17 N -0.77 -17.98 10.96 55.56 0.61 -17.37 16 18 Si 0.92 16.86 29.60 -169.99 -5.03 11.83 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 22 C -0.24 -5.64 9.73 -39.27 -0.38 -6.02 16 23 C -0.02 -0.42 9.52 -39.60 -0.38 -0.80 16 24 C -0.13 -2.12 8.31 -39.38 -0.33 -2.45 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.41 6.21 6.83 -40.82 -0.28 5.93 16 32 H 0.09 1.62 6.38 -52.49 -0.34 1.28 16 33 H 0.12 2.92 6.17 -52.49 -0.32 2.60 16 34 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 36 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 37 H 0.14 2.55 6.38 -52.49 -0.33 2.22 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -27.66 317.95 -9.28 -36.94 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.18 Total: 12.86 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -5.49 Total: -24.10 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.55 Total: -29.45 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.66 -9.28 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058243020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.634 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds