Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38309 * 119.96594 * 2 1 4 4 C 1.38265 * 120.14865 * 180.02562 * 3 2 1 5 5 C 1.38119 * 120.07520 * 0.24053 * 4 3 2 6 6 C 1.38879 * 119.92648 * 359.51098 * 5 4 3 7 7 N 1.39807 * 120.07864 * 180.23082 * 6 5 4 8 8 C 1.34774 * 120.00245 * 213.16696 * 7 6 5 9 9 O 1.21601 * 120.00339 * 5.19969 * 8 7 6 10 10 C 1.47602 * 119.99787 * 185.19236 * 8 7 6 11 11 C 1.40035 * 119.89489 * 359.73236 * 10 8 7 12 12 C 1.36308 * 120.10129 * 179.71230 * 11 10 8 13 13 C 1.40905 * 119.89234 * 0.55989 * 12 11 10 14 14 C 1.41085 * 120.10050 * 179.69429 * 13 12 11 15 15 H 1.08000 * 119.99962 * 205.01841 * 14 13 12 16 16 C 1.40229 * 120.00411 * 25.01557 * 14 13 12 17 17 N 1.30650 * 119.99574 * 17.54005 * 16 14 13 18 18 Si 1.86796 * 120.00244 * 197.54734 * 16 14 13 19 19 H 1.48496 * 109.47485 * 94.68247 * 18 16 14 20 20 H 1.48504 * 109.47095 * 214.68007 * 18 16 14 21 21 H 1.48501 * 109.47098 * 334.67625 * 18 16 14 22 22 C 1.40896 * 119.79418 * 359.71785 * 13 12 11 23 23 C 1.36304 * 119.89831 * 359.97438 * 22 13 12 24 24 C 1.38089 * 119.96113 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47355 * 89.99487 * 1 2 3 26 26 H 1.08996 * 109.47150 * 209.99244 * 1 2 3 27 27 H 1.09003 * 109.46843 * 329.99290 * 1 2 3 28 28 H 1.07998 * 119.92588 * 0.02562 * 3 2 1 29 29 H 1.08010 * 119.96340 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.03762 * 179.74760 * 5 4 3 31 31 H 0.96998 * 119.99448 * 33.17672 * 7 6 5 32 32 H 1.07994 * 119.95022 * 359.97438 * 11 10 8 33 33 H 1.07996 * 120.05615 * 180.24958 * 12 11 10 34 34 H 0.96996 * 119.99451 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.05168 * 179.97438 * 22 13 12 36 36 H 1.07998 * 119.95117 * 179.97438 * 23 22 13 37 37 H 1.07993 * 120.03588 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2764 0.0096 -0.0061 6 6 3.5859 -1.1954 -0.0009 7 7 4.2872 -2.4048 -0.0016 8 6 3.7774 -3.4791 -0.6359 9 8 2.7556 -3.3728 -1.2866 10 6 4.4593 -4.7847 -0.5409 11 6 5.6390 -4.9033 0.2043 12 6 6.2690 -6.1083 0.2997 13 6 5.7380 -7.2328 -0.3627 14 6 6.3900 -8.4807 -0.2722 15 1 6.2568 -9.2173 -1.0507 16 6 7.2112 -8.7646 0.8284 17 7 7.1145 -8.0491 1.9173 18 14 8.4435 -10.1655 0.7377 19 1 9.7681 -9.6339 0.3280 20 1 8.5595 -10.8098 2.0706 21 1 7.9825 -11.1666 -0.2575 22 6 4.5540 -7.1071 -1.1161 23 6 3.9274 -5.8996 -1.2006 24 6 2.1966 -1.1964 -0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5140 28 1 1.6560 2.1325 0.0004 29 1 4.1169 2.1401 -0.0010 30 1 5.3564 0.0138 -0.0106 31 1 5.1407 -2.4708 0.4546 32 1 6.0479 -4.0398 0.7077 33 1 7.1766 -6.1998 0.8779 34 1 7.6823 -8.2457 2.6787 35 1 4.1435 -7.9662 -1.6258 36 1 3.0201 -5.8021 -1.7782 37 1 1.6566 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058243020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -17.653159 kcal Electronic energy + Delta-G solvation = -20215.219544 eV Core-core repulsion = 17113.688572 eV Total energy + Delta-G solvation = -3101.530972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52996 -39.83713 -38.79841 -35.95302 -35.71495 -33.33250 -32.30291 -31.35475 -30.44853 -27.91753 -27.62496 -24.57154 -23.19680 -22.90610 -22.14602 -21.18713 -19.41154 -18.76005 -17.85237 -17.30305 -17.01086 -16.33973 -15.92881 -15.79947 -15.39586 -15.14177 -14.72114 -14.59397 -14.45731 -14.02842 -13.93784 -13.70333 -13.36698 -13.16340 -13.01803 -12.88812 -12.66591 -12.46562 -12.37452 -12.07377 -11.77512 -11.41365 -11.26757 -11.15172 -10.72928 -9.64709 -9.63093 -9.51236 -9.00417 -8.82852 -6.52599 0.16714 0.46371 0.58805 1.11484 1.38200 1.42358 1.53468 2.04820 2.15441 2.21032 2.69737 2.91975 3.64349 3.86983 4.03809 4.18073 4.25194 4.27617 4.39685 4.45517 4.48913 4.66001 4.79927 4.88404 4.89483 4.97199 4.99451 5.10320 5.23804 5.26219 5.42322 5.46460 5.54792 5.60587 5.73311 5.77404 5.89722 5.95180 6.16244 6.18368 6.49311 6.55373 6.72686 6.83912 7.28087 8.12009 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038361 B = 0.003243 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.736369 B = 8632.972800 C = 9062.366564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.162 4.162 6 C 0.136 3.864 7 N -0.671 5.671 8 C 0.571 3.429 9 O -0.583 6.583 10 C -0.297 4.297 11 C -0.053 4.053 12 C -0.196 4.196 13 C 0.103 3.897 14 C -0.468 4.468 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.795 5.795 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.257 1.257 22 C -0.252 4.252 23 C -0.029 4.029 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.418 0.582 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.298 0.702 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 13.212 1.296 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.161 4.161 4 C -0.111 4.111 5 C -0.183 4.183 6 C 0.041 3.959 7 N -0.315 5.315 8 C 0.367 3.633 9 O -0.466 6.466 10 C -0.302 4.302 11 C -0.072 4.072 12 C -0.216 4.216 13 C 0.100 3.900 14 C -0.495 4.495 15 H 0.105 0.895 16 C -0.182 4.182 17 N -0.418 5.418 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.189 1.189 21 H -0.181 1.181 22 C -0.271 4.271 23 C -0.048 4.048 24 C -0.175 4.175 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.170 0.830 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.257 0.743 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.161 13.243 1.117 13.464 hybrid contribution 0.748 -1.124 0.215 1.368 sum -1.413 12.118 1.332 12.273 Atomic orbital electron populations 1.20817 0.89634 1.03449 1.02859 1.20124 0.97437 0.92371 0.98095 1.21341 0.94643 0.97704 1.02456 1.21322 0.94312 0.97943 0.97492 1.21180 1.00930 0.90723 1.05448 1.18131 0.91750 0.85963 1.00019 1.43384 1.24759 1.08881 1.54506 1.18564 0.83439 0.84316 0.77009 1.90632 1.26695 1.85826 1.43429 1.19042 1.03216 0.92794 1.15145 1.20728 0.93458 0.97379 0.95678 1.21016 1.02247 0.92025 1.06268 1.18155 0.89464 0.93813 0.88598 1.20171 1.23190 1.00295 1.05855 0.89469 1.26957 0.97587 1.00378 0.93287 1.69759 1.32227 1.36900 1.02939 0.85068 0.77689 0.77121 0.79230 1.18269 1.18915 1.18067 1.20859 0.98843 0.97047 1.10381 1.20500 0.97211 0.92135 0.94985 1.21084 0.93237 0.98777 1.04446 0.90778 0.92384 0.88973 0.83021 0.82293 0.83913 0.74324 0.85849 0.86646 0.89042 0.87583 0.87840 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.23 0.71 -1.59 16 2 C -0.08 -2.12 5.88 -19.88 -0.12 -2.23 16 3 C -0.14 -3.00 9.70 22.29 0.22 -2.79 16 4 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 5 C -0.16 -4.07 9.96 22.40 0.22 -3.85 16 6 C 0.14 4.45 6.29 38.19 0.24 4.69 16 7 N -0.67 -23.51 5.28 -306.30 -1.62 -25.13 16 8 C 0.57 24.77 7.50 86.72 0.65 25.42 16 9 O -0.58 -28.27 13.97 -4.03 -0.06 -28.33 16 10 C -0.30 -13.66 5.89 -19.93 -0.12 -13.78 16 11 C -0.05 -2.34 9.47 22.26 0.21 -2.13 16 12 C -0.20 -9.59 8.63 22.47 0.19 -9.40 16 13 C 0.10 5.29 5.57 -21.28 -0.12 5.18 16 14 C -0.47 -23.29 9.04 23.45 0.21 -23.08 16 15 H 0.09 4.16 7.91 -2.91 -0.02 4.13 16 16 C 0.04 1.71 5.14 85.35 0.44 2.14 16 17 N -0.80 -37.39 10.96 21.87 0.24 -37.15 16 18 Si 0.99 34.12 29.60 68.60 2.03 36.15 16 19 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 20 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 21 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 22 C -0.25 -12.42 9.73 22.47 0.22 -12.20 16 23 C -0.03 -1.40 9.52 22.26 0.21 -1.19 16 24 C -0.15 -5.31 8.31 22.40 0.19 -5.12 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 27 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.42 12.34 6.83 -92.71 -0.63 11.70 16 32 H 0.12 4.38 6.38 -2.91 -0.02 4.36 16 33 H 0.12 5.69 6.17 -2.91 -0.02 5.67 16 34 H 0.30 12.41 8.29 -92.71 -0.77 11.65 16 35 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 37 H 0.10 4.14 6.38 -2.91 -0.02 4.13 16 Total: -1.00 -62.21 317.95 4.65 -57.56 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.47 Total: 38.47 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 3.59 Total: -41.57 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.38 Total: -62.28 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Total: -62.21 4.65 -57.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058243020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.908 kcal (2) G-P(sol) polarization free energy of solvation -62.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds