Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38124 * 120.04090 * 2 1 4 4 C 1.38270 * 120.07533 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.14525 * 359.97438 * 4 3 2 6 6 C 1.38081 * 120.07814 * 0.02562 * 5 4 3 7 7 C 1.38888 * 120.03369 * 179.97438 * 2 1 3 8 8 N 1.39807 * 120.07766 * 359.97438 * 7 2 1 9 9 C 1.34774 * 120.00038 * 145.49761 * 8 7 2 10 10 O 1.21602 * 120.00350 * 4.17698 * 9 8 7 11 11 C 1.47598 * 119.99804 * 184.17912 * 9 8 7 12 12 C 1.40031 * 119.89800 * 359.72601 * 11 9 8 13 13 C 1.36305 * 120.10672 * 179.71725 * 12 11 9 14 14 C 1.40901 * 119.88957 * 0.55452 * 13 12 11 15 15 C 1.41093 * 120.10165 * 179.69655 * 14 13 12 16 16 H 1.07991 * 120.00108 * 214.73777 * 15 14 13 17 17 C 1.40230 * 119.99657 * 34.73370 * 15 14 13 18 18 N 1.30644 * 120.00288 * 355.72980 * 17 15 14 19 19 Si 1.86804 * 119.99633 * 175.72917 * 17 15 14 20 20 H 1.48506 * 109.46813 * 90.00276 * 19 17 15 21 21 H 1.48498 * 109.47222 * 209.99814 * 19 17 15 22 22 H 1.48497 * 109.47428 * 330.00077 * 19 17 15 23 23 C 1.40892 * 119.79738 * 359.72067 * 14 13 12 24 24 C 1.36306 * 119.89633 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.46985 * 270.01681 * 1 2 3 26 26 H 1.08994 * 109.46952 * 30.02073 * 1 2 3 27 27 H 1.08999 * 109.47309 * 150.02013 * 1 2 3 28 28 H 1.07999 * 119.95673 * 359.97438 * 3 2 1 29 29 H 1.07991 * 119.92384 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.95869 * 180.28076 * 5 4 3 31 31 H 1.08004 * 120.03691 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00036 * 325.49852 * 8 7 2 33 33 H 1.08003 * 119.95044 * 0.02562 * 12 11 9 34 34 H 1.08002 * 120.05383 * 180.24765 * 13 12 11 35 35 H 0.96997 * 119.99813 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.05267 * 179.97438 * 23 14 13 37 37 H 1.07992 * 119.95012 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5812 1.1965 0.0005 5 6 4.2765 0.0009 0.0016 6 6 3.5915 -1.1980 0.0016 7 6 2.2021 -1.2024 0.0005 8 7 1.5055 -2.4145 0.0016 9 6 2.0033 -3.4785 -0.6590 10 8 3.0940 -3.4075 -1.1920 11 6 1.2247 -4.7301 -0.7355 12 6 -0.0285 -4.8114 -0.1161 13 6 -0.7538 -5.9632 -0.1890 14 6 -0.2353 -7.0769 -0.8791 15 6 -0.9794 -8.2735 -0.9519 16 1 -0.4716 -9.2265 -0.9429 17 6 -2.3784 -8.2251 -1.0359 18 7 -2.9979 -7.0772 -0.9627 19 14 -3.3561 -9.8020 -1.2524 20 1 -3.7033 -10.3561 0.0809 21 1 -4.6014 -9.5126 -2.0078 22 1 -2.5408 -10.7910 -2.0023 23 6 1.0286 -6.9922 -1.4959 24 6 1.7439 -5.8342 -1.4230 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6584 2.1310 -0.0004 29 1 4.1193 2.1328 0.0010 30 1 5.3564 0.0051 0.0066 31 1 4.1351 -2.1313 0.0029 32 1 0.6638 -2.4897 0.4778 33 1 -0.4234 -3.9586 0.4160 34 1 -1.7220 -6.0237 0.2856 35 1 -3.9655 -7.0438 -1.0212 36 1 1.4301 -7.8434 -2.0255 37 1 2.7129 -5.7684 -1.8950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058243025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = -0.441200 kcal Electronic energy + Delta-G solvation = -20441.991793 eV Core-core repulsion = 17341.207188 eV Total energy + Delta-G solvation = -3100.784605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23848 -38.41609 -37.11327 -34.42962 -33.86591 -32.42403 -30.65255 -29.54301 -29.16021 -26.83395 -25.84889 -23.14291 -21.79707 -21.22838 -20.78250 -19.62952 -17.73398 -17.47704 -16.53415 -15.68554 -15.41680 -15.10720 -14.50167 -14.09475 -13.88651 -13.77744 -13.52119 -13.22752 -12.97946 -12.82529 -12.35110 -12.19380 -12.00433 -11.87181 -11.59399 -11.31016 -11.28658 -11.09860 -10.98054 -10.67397 -10.08518 -9.98131 -9.63739 -9.48588 -9.08749 -8.56994 -7.88455 -7.78922 -7.47936 -6.94472 -4.70325 1.42864 1.55890 2.12725 2.89526 2.93110 2.94695 2.98946 3.58401 3.66996 3.75723 4.01740 4.53030 4.92024 4.97894 5.21838 5.32714 5.43522 5.51062 5.61752 5.68360 5.76401 5.89957 5.93803 6.05572 6.21659 6.25231 6.50247 6.62471 6.68194 6.69839 6.78824 6.81897 6.93407 7.06611 7.30158 7.39033 7.53062 7.69032 7.81221 8.00181 8.02175 8.36239 8.59439 8.67477 8.83086 9.93915 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035221 B = 0.003525 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.793749 B = 7940.500314 C = 8635.697928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.122 4.122 7 C 0.162 3.838 8 N -0.680 5.680 9 C 0.570 3.430 10 O -0.553 6.553 11 C -0.276 4.276 12 C -0.069 4.069 13 C -0.165 4.165 14 C 0.127 3.873 15 C -0.446 4.446 16 H 0.083 0.917 17 C 0.069 3.931 18 N -0.790 5.790 19 Si 0.921 3.079 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.228 4.228 24 C -0.026 4.026 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.408 0.592 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.284 0.716 36 H 0.101 0.899 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 10.247 3.424 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.164 4.164 5 C -0.128 4.128 6 C -0.142 4.142 7 C 0.066 3.934 8 N -0.325 5.325 9 C 0.367 3.633 10 O -0.434 6.434 11 C -0.280 4.280 12 C -0.088 4.088 13 C -0.185 4.185 14 C 0.124 3.876 15 C -0.475 4.475 16 H 0.102 0.898 17 C -0.149 4.149 18 N -0.414 5.414 19 Si 0.745 3.255 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.247 4.247 24 C -0.046 4.046 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.245 0.755 33 H 0.107 0.893 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.044 10.305 3.019 11.161 hybrid contribution -0.986 -0.566 0.018 1.137 sum 2.058 9.738 3.037 10.406 Atomic orbital electron populations 1.20729 0.91127 1.03145 1.02168 1.19723 0.96062 0.91988 1.04760 1.20757 0.94131 0.96622 1.00824 1.21011 0.94192 0.97832 1.03371 1.21015 0.99669 0.92092 1.00030 1.21387 0.92825 0.99438 1.00589 1.17710 0.91491 0.85151 0.99000 1.43608 1.25990 1.09476 1.53418 1.18762 0.85380 0.83139 0.76043 1.90637 1.21606 1.83497 1.47650 1.18881 0.98572 0.94058 1.16491 1.20555 0.93301 0.97224 0.97703 1.21275 1.01162 0.93408 1.02609 1.17875 0.90365 0.93213 0.86145 1.19803 0.91085 0.94254 1.42316 0.89847 1.26073 0.98396 0.98122 0.92343 1.69663 1.10999 1.26193 1.34575 0.86085 0.78886 0.81091 0.79437 1.19132 1.19958 1.18360 1.20861 0.98792 0.97600 1.07482 1.20383 0.97420 0.91996 0.94753 0.91308 0.91369 0.91385 0.86188 0.86481 0.86187 0.84175 0.75467 0.89258 0.84985 0.90432 0.88098 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.47 36.01 0.34 -0.98 16 2 C -0.12 -1.70 5.90 -104.42 -0.62 -2.32 16 3 C -0.10 -1.28 9.70 -39.61 -0.38 -1.67 16 4 C -0.15 -1.76 10.04 -39.54 -0.40 -2.15 16 5 C -0.11 -1.49 10.04 -39.61 -0.40 -1.89 16 6 C -0.12 -2.02 8.70 -39.38 -0.34 -2.36 16 7 C 0.16 2.67 6.29 -83.72 -0.53 2.14 16 8 N -0.68 -11.77 4.69 -10.79 -0.05 -11.83 16 9 C 0.57 11.91 7.61 -12.44 -0.09 11.81 16 10 O -0.55 -12.70 13.73 5.28 0.07 -12.62 16 11 C -0.28 -6.10 5.89 -104.73 -0.62 -6.72 16 12 C -0.07 -1.47 9.47 -39.61 -0.38 -1.85 16 13 C -0.17 -3.94 8.61 -39.27 -0.34 -4.28 16 14 C 0.13 3.16 5.55 -106.80 -0.59 2.57 16 15 C -0.45 -10.90 9.03 -37.75 -0.34 -11.24 16 16 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 17 C 0.07 1.60 5.42 -17.31 -0.09 1.51 16 18 N -0.79 -18.68 10.59 55.56 0.59 -18.09 16 19 Si 0.92 17.29 29.56 -169.99 -5.03 12.26 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C -0.23 -5.36 9.73 -39.27 -0.38 -5.74 16 24 C -0.03 -0.60 9.52 -39.60 -0.38 -0.98 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.07 0.85 7.17 -51.93 -0.37 0.48 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.14 2.56 6.20 -52.48 -0.33 2.24 16 32 H 0.41 6.19 5.85 -40.82 -0.24 5.95 16 33 H 0.09 1.61 6.38 -52.48 -0.33 1.27 16 34 H 0.13 3.22 6.13 -52.49 -0.32 2.89 16 35 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.10 2.27 7.63 -52.49 -0.40 1.86 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -27.42 314.83 -9.28 -36.70 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.07 Total: 12.97 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -5.53 Total: -24.14 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.54 Total: -29.92 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.42 -9.28 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058243025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.260 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds