Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38124 * 120.04090 * 2 1 4 4 C 1.38270 * 120.07533 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.14525 * 359.97438 * 4 3 2 6 6 C 1.38081 * 120.07814 * 0.02562 * 5 4 3 7 7 C 1.38888 * 120.03369 * 179.97438 * 2 1 3 8 8 N 1.39807 * 120.07766 * 359.97438 * 7 2 1 9 9 C 1.34774 * 120.00038 * 145.49761 * 8 7 2 10 10 O 1.21602 * 120.00350 * 4.17698 * 9 8 7 11 11 C 1.47598 * 119.99804 * 184.17912 * 9 8 7 12 12 C 1.40031 * 119.89800 * 359.72601 * 11 9 8 13 13 C 1.36305 * 120.10672 * 179.71725 * 12 11 9 14 14 C 1.40901 * 119.88957 * 0.55452 * 13 12 11 15 15 C 1.41093 * 120.10165 * 179.69655 * 14 13 12 16 16 H 1.07991 * 120.00108 * 214.73777 * 15 14 13 17 17 C 1.40230 * 119.99657 * 34.73370 * 15 14 13 18 18 N 1.30644 * 120.00288 * 355.72980 * 17 15 14 19 19 Si 1.86804 * 119.99633 * 175.72917 * 17 15 14 20 20 H 1.48506 * 109.46813 * 90.00276 * 19 17 15 21 21 H 1.48498 * 109.47222 * 209.99814 * 19 17 15 22 22 H 1.48497 * 109.47428 * 330.00077 * 19 17 15 23 23 C 1.40892 * 119.79738 * 359.72067 * 14 13 12 24 24 C 1.36306 * 119.89633 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.46985 * 270.01681 * 1 2 3 26 26 H 1.08994 * 109.46952 * 30.02073 * 1 2 3 27 27 H 1.08999 * 109.47309 * 150.02013 * 1 2 3 28 28 H 1.07999 * 119.95673 * 359.97438 * 3 2 1 29 29 H 1.07991 * 119.92384 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.95869 * 180.28076 * 5 4 3 31 31 H 1.08004 * 120.03691 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00036 * 325.49852 * 8 7 2 33 33 H 1.08003 * 119.95044 * 0.02562 * 12 11 9 34 34 H 1.08002 * 120.05383 * 180.24765 * 13 12 11 35 35 H 0.96997 * 119.99813 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.05267 * 179.97438 * 23 14 13 37 37 H 1.07992 * 119.95012 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5812 1.1965 0.0005 5 6 4.2765 0.0009 0.0016 6 6 3.5915 -1.1980 0.0016 7 6 2.2021 -1.2024 0.0005 8 7 1.5055 -2.4145 0.0016 9 6 2.0033 -3.4785 -0.6590 10 8 3.0940 -3.4075 -1.1920 11 6 1.2247 -4.7301 -0.7355 12 6 -0.0285 -4.8114 -0.1161 13 6 -0.7538 -5.9632 -0.1890 14 6 -0.2353 -7.0769 -0.8791 15 6 -0.9794 -8.2735 -0.9519 16 1 -0.4716 -9.2265 -0.9429 17 6 -2.3784 -8.2251 -1.0359 18 7 -2.9979 -7.0772 -0.9627 19 14 -3.3561 -9.8020 -1.2524 20 1 -3.7033 -10.3561 0.0809 21 1 -4.6014 -9.5126 -2.0078 22 1 -2.5408 -10.7910 -2.0023 23 6 1.0286 -6.9922 -1.4959 24 6 1.7439 -5.8342 -1.4230 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6584 2.1310 -0.0004 29 1 4.1193 2.1328 0.0010 30 1 5.3564 0.0051 0.0066 31 1 4.1351 -2.1313 0.0029 32 1 0.6638 -2.4897 0.4778 33 1 -0.4234 -3.9586 0.4160 34 1 -1.7220 -6.0237 0.2856 35 1 -3.9655 -7.0438 -1.0212 36 1 1.4301 -7.8434 -2.0255 37 1 2.7129 -5.7684 -1.8950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058243025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = -13.228576 kcal Electronic energy + Delta-G solvation = -20442.546296 eV Core-core repulsion = 17341.207188 eV Total energy + Delta-G solvation = -3101.339108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62490 -39.84723 -38.77354 -35.83399 -35.61271 -33.48149 -32.29928 -31.35115 -30.46707 -28.02466 -27.38295 -24.58113 -23.23584 -22.84717 -22.08744 -21.17995 -19.41498 -18.98674 -17.97662 -17.22402 -16.69467 -16.36480 -16.03854 -15.79489 -15.28017 -15.10179 -14.83223 -14.58927 -14.48011 -14.04779 -13.92674 -13.66487 -13.38280 -13.19985 -12.99358 -12.85636 -12.62076 -12.43733 -12.26996 -12.14327 -11.76473 -11.43551 -11.29956 -11.17986 -10.70080 -9.64755 -9.62978 -9.39769 -8.97599 -8.67610 -6.54818 0.15319 0.46817 0.57236 1.09742 1.40580 1.42443 1.54151 2.05477 2.18116 2.20663 2.74940 2.91061 3.60438 3.90870 3.98008 4.09439 4.23447 4.28338 4.39737 4.42834 4.58225 4.64903 4.79456 4.83610 4.89532 5.03152 5.04089 5.10662 5.26393 5.28209 5.42034 5.52062 5.58306 5.62975 5.65763 5.76117 5.89861 5.99127 6.16156 6.21186 6.51156 6.55092 6.77928 6.85110 7.25355 8.23342 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035221 B = 0.003525 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.793749 B = 7940.500314 C = 8635.697928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.134 4.134 5 C -0.116 4.116 6 C -0.148 4.148 7 C 0.125 3.875 8 N -0.666 5.666 9 C 0.570 3.430 10 O -0.580 6.580 11 C -0.282 4.282 12 C -0.059 4.059 13 C -0.184 4.184 14 C 0.100 3.900 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.032 3.968 18 N -0.815 5.815 19 Si 0.992 3.008 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.239 4.239 24 C -0.037 4.037 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.293 0.707 36 H 0.108 0.892 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 12.463 3.832 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.168 4.168 7 C 0.031 3.969 8 N -0.311 5.311 9 C 0.366 3.634 10 O -0.463 6.463 11 C -0.286 4.286 12 C -0.078 4.078 13 C -0.203 4.203 14 C 0.097 3.903 15 C -0.506 4.506 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.440 5.440 19 Si 0.813 3.187 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.259 4.259 24 C -0.056 4.056 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.173 0.827 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.129 0.871 32 H 0.256 0.744 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.168 12.565 3.450 13.209 hybrid contribution -0.616 -1.045 -0.082 1.215 sum 1.553 11.520 3.369 12.102 Atomic orbital electron populations 1.20798 0.89456 1.03498 1.03420 1.20052 0.97409 0.91481 1.03574 1.21227 0.94473 0.97284 0.99162 1.21461 0.94498 0.98474 1.00809 1.21278 1.00820 0.91716 0.99658 1.21338 0.93250 0.99605 1.02634 1.17983 0.91719 0.85440 1.01790 1.43319 1.26089 1.09191 1.52462 1.18574 0.84912 0.83619 0.76330 1.90623 1.22588 1.84064 1.49003 1.19146 0.98943 0.94591 1.15921 1.20799 0.92561 0.97577 0.96849 1.21287 1.01345 0.94233 1.03463 1.18214 0.91059 0.94133 0.86868 1.20055 0.92328 0.94219 1.43999 0.89787 1.26908 0.98700 1.01396 0.91416 1.69702 1.11773 1.27958 1.34542 0.85027 0.77285 0.76821 0.79608 1.18281 1.19134 1.18373 1.20995 0.98810 0.98180 1.07881 1.20530 0.97641 0.92301 0.95141 0.89541 0.89243 0.92806 0.82664 0.82907 0.84335 0.87078 0.74431 0.85842 0.85755 0.89571 0.87375 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 9.47 71.24 0.67 -1.64 16 2 C -0.12 -3.11 5.90 -19.74 -0.12 -3.23 16 3 C -0.10 -2.12 9.70 22.25 0.22 -1.90 16 4 C -0.13 -2.75 10.04 22.29 0.22 -2.52 16 5 C -0.12 -2.98 10.04 22.25 0.22 -2.75 16 6 C -0.15 -4.93 8.70 22.40 0.19 -4.73 16 7 C 0.12 4.05 6.29 38.19 0.24 4.29 16 8 N -0.67 -23.00 4.69 -306.29 -1.44 -24.44 16 9 C 0.57 24.29 7.61 86.71 0.66 24.95 16 10 O -0.58 -27.53 13.73 -4.04 -0.06 -27.59 16 11 C -0.28 -12.72 5.89 -19.94 -0.12 -12.83 16 12 C -0.06 -2.54 9.47 22.25 0.21 -2.33 16 13 C -0.18 -8.96 8.61 22.47 0.19 -8.77 16 14 C 0.10 5.14 5.55 -21.28 -0.12 5.03 16 15 C -0.48 -23.95 9.03 23.46 0.21 -23.74 16 16 H 0.08 4.03 7.85 -2.92 -0.02 4.01 16 17 C 0.03 1.49 5.42 85.35 0.46 1.95 16 18 N -0.81 -38.82 10.59 21.87 0.23 -38.59 16 19 Si 0.99 35.14 29.56 68.60 2.03 37.17 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 21 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 23 C -0.24 -11.66 9.73 22.47 0.22 -11.44 16 24 C -0.04 -1.75 9.52 22.26 0.21 -1.53 16 25 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 27 H 0.05 1.24 7.17 -2.39 -0.02 1.22 16 28 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 2.06 8.06 -2.92 -0.02 2.03 16 30 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.11 4.29 6.20 -2.91 -0.02 4.27 16 32 H 0.42 12.33 5.85 -92.71 -0.54 11.79 16 33 H 0.12 4.33 6.38 -2.91 -0.02 4.31 16 34 H 0.12 6.20 6.13 -2.91 -0.02 6.18 16 35 H 0.29 12.52 8.29 -92.71 -0.77 11.75 16 36 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 37 H 0.11 4.85 7.63 -2.91 -0.02 4.82 16 Total: -1.00 -61.30 314.83 4.92 -56.38 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.56 Total: 38.28 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 3.59 Total: -41.21 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -1.21 Total: -63.03 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -61.30 4.92 -56.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058243025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.150 kcal (2) G-P(sol) polarization free energy of solvation -61.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds