Wall clock time and date at job start Tue Mar 31 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 119.92501 * 2 1 4 4 C 1.38095 * 120.07600 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.92575 * 359.97438 * 4 3 2 6 6 N 1.39806 * 120.07526 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99900 * 35.49743 * 6 5 4 8 8 O 1.21604 * 120.00030 * 355.53988 * 7 6 5 9 9 C 1.47590 * 119.99871 * 175.27251 * 7 6 5 10 10 C 1.40039 * 119.89709 * 0.02562 * 9 7 6 11 11 C 1.36305 * 120.10258 * 179.71969 * 10 9 7 12 12 C 1.40897 * 119.89145 * 0.57785 * 11 10 9 13 13 C 1.41096 * 120.09765 * 179.67424 * 12 11 10 14 14 H 1.08001 * 119.99994 * 205.53129 * 13 12 11 15 15 C 1.40232 * 120.00068 * 25.53007 * 13 12 11 16 16 N 1.30652 * 119.99889 * 17.02847 * 15 13 12 17 17 Si 1.86795 * 120.00170 * 197.02175 * 15 13 12 18 18 H 1.48500 * 109.46945 * 90.00019 * 17 15 13 19 19 H 1.48497 * 109.47479 * 210.00023 * 17 15 13 20 20 H 1.48504 * 109.47040 * 330.00696 * 17 15 13 21 21 C 1.40888 * 119.80120 * 359.69290 * 12 11 10 22 22 C 1.36305 * 119.89271 * 0.02562 * 21 12 11 23 23 C 1.38904 * 119.84830 * 0.25531 * 5 4 3 24 24 C 1.38101 * 119.93055 * 359.51417 * 23 5 4 25 25 H 1.08997 * 109.47133 * 89.99548 * 1 2 3 26 26 H 1.09004 * 109.46789 * 209.99833 * 1 2 3 27 27 H 1.08998 * 109.47308 * 329.99659 * 1 2 3 28 28 H 1.08006 * 119.96432 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.04303 * 179.97438 * 4 3 2 30 30 H 0.96997 * 120.00247 * 215.49790 * 6 5 4 31 31 H 1.07998 * 119.94881 * 0.02562 * 10 9 7 32 32 H 1.08001 * 120.05005 * 180.27423 * 11 10 9 33 33 H 0.96996 * 119.99411 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.05945 * 179.97438 * 21 12 11 35 35 H 1.07997 * 119.94982 * 179.97438 * 22 21 12 36 36 H 1.08008 * 120.03527 * 179.72198 * 23 5 4 37 37 H 1.07993 * 119.96768 * 180.21180 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 0.0001 -0.0005 6 7 5.6721 0.0001 -0.0016 7 6 6.3465 0.9507 0.6752 8 8 5.7416 1.8546 1.2192 9 6 7.8187 0.8914 0.7611 10 6 8.5127 -0.1532 0.1381 11 6 9.8727 -0.2090 0.2100 12 6 10.5793 0.7799 0.9227 13 6 11.9867 0.7226 1.0057 14 1 12.4978 1.1838 1.8378 15 6 12.7218 0.0668 0.0077 16 7 12.1672 -0.1967 -1.1455 17 14 14.4939 -0.4299 0.3270 18 1 14.5283 -1.7980 0.9036 19 1 15.2510 -0.4120 -0.9504 20 1 15.1114 0.5252 1.2819 21 6 9.8764 1.8258 1.5527 22 6 8.5167 1.8765 1.4706 23 6 3.5779 -1.2019 -0.0054 24 6 2.1969 -1.1985 0.0000 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6551 2.1329 -0.0004 29 1 4.1161 2.1385 -0.0010 30 1 6.1568 -0.6840 -0.4894 31 1 7.9699 -0.9132 -0.4042 32 1 10.4074 -1.0126 -0.2745 33 1 12.6758 -0.6500 -1.8359 34 1 10.4138 2.5858 2.1004 35 1 7.9769 2.6776 1.9534 36 1 4.1162 -2.1383 -0.0099 37 1 1.6552 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058243053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:35 Heat of formation + Delta-G solvation = -3.868560 kcal Electronic energy + Delta-G solvation = -20100.331790 eV Core-core repulsion = 16999.398564 eV Total energy + Delta-G solvation = -3100.933227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09962 -38.45355 -37.14927 -34.60816 -33.95807 -31.58010 -30.77849 -30.06391 -29.53179 -26.76092 -25.43160 -22.84747 -22.32314 -21.23160 -20.79416 -19.61776 -17.72375 -17.51632 -16.51365 -15.57689 -15.30814 -15.06555 -14.49945 -14.09483 -13.90457 -13.69640 -13.63559 -13.30280 -13.19990 -12.82452 -12.29432 -12.21434 -12.04657 -11.97467 -11.51387 -11.44775 -11.32963 -11.02044 -10.97130 -10.72947 -10.10200 -9.83244 -9.63177 -9.43810 -9.08204 -8.73045 -7.85569 -7.76106 -7.56763 -7.10608 -4.68449 1.42581 1.57410 2.15335 2.87041 2.91568 2.94235 2.96420 3.61593 3.66271 3.69978 4.00556 4.49037 4.91848 4.96978 5.16875 5.31417 5.48452 5.53178 5.54272 5.63125 5.83005 5.87276 5.94059 6.00721 6.21016 6.23451 6.46528 6.60282 6.69719 6.74015 6.75709 6.81860 6.94944 7.04601 7.31108 7.36042 7.55761 7.68843 7.78107 7.98615 8.05018 8.31842 8.54938 8.66639 8.88234 9.81241 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.045020 B = 0.003077 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.791317 B = 9098.073005 C = 9545.093750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.121 4.121 5 C 0.159 3.841 6 N -0.684 5.684 7 C 0.571 3.429 8 O -0.556 6.556 9 C -0.288 4.288 10 C -0.062 4.062 11 C -0.176 4.176 12 C 0.130 3.870 13 C -0.439 4.439 14 H 0.086 0.914 15 C 0.073 3.927 16 N -0.770 5.770 17 Si 0.916 3.084 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.018 4.018 23 C -0.152 4.152 24 C -0.103 4.103 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.140 0.860 30 H 0.408 0.592 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.288 0.712 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -3.765 -1.381 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.121 4.121 4 C -0.141 4.141 5 C 0.064 3.936 6 N -0.328 5.328 7 C 0.368 3.632 8 O -0.437 6.437 9 C -0.292 4.292 10 C -0.082 4.082 11 C -0.195 4.195 12 C 0.126 3.874 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.149 4.149 16 N -0.393 5.393 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.258 4.258 22 C -0.037 4.037 23 C -0.173 4.173 24 C -0.121 4.121 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.245 0.755 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.784 -3.216 -1.224 12.276 hybrid contribution 1.120 -0.669 -0.285 1.335 sum -10.664 -3.884 -1.509 11.450 Atomic orbital electron populations 1.20706 0.91560 1.02341 1.01822 1.19821 0.95818 0.93247 1.03073 1.20911 0.93689 0.97359 1.00176 1.21369 0.93928 0.98314 1.00501 1.17867 0.83406 0.93814 0.98541 1.43614 1.03865 1.32722 1.52624 1.18742 0.88382 0.79982 0.76122 1.90635 1.70323 1.34916 1.47838 1.18780 0.89331 1.04524 1.16582 1.20471 0.94954 0.95625 0.97101 1.20974 0.92245 1.00877 1.05444 1.17811 0.93309 0.88594 0.87670 1.19897 0.91780 1.28415 1.06526 0.89555 1.26130 1.01726 0.93057 0.93952 1.69737 1.39064 1.27542 1.02923 0.86171 0.80511 0.80233 0.79170 1.18875 1.19949 1.18219 1.20729 0.93346 1.01053 1.10626 1.20359 0.93834 0.95380 0.94176 1.20913 0.94474 0.96584 1.05346 1.20722 0.93290 0.97355 1.00763 0.91668 0.91948 0.91883 0.86181 0.84249 0.75531 0.89301 0.86118 0.90107 0.88219 0.87972 0.85946 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.12 -1.46 5.88 -104.58 -0.62 -2.07 16 3 C -0.10 -1.42 9.69 -39.61 -0.38 -1.80 16 4 C -0.12 -2.02 8.69 -39.38 -0.34 -2.36 16 5 C 0.16 2.63 6.29 -83.72 -0.53 2.10 16 6 N -0.68 -11.96 5.28 -10.79 -0.06 -12.01 16 7 C 0.57 12.08 7.60 -12.44 -0.09 11.99 16 8 O -0.56 -12.93 13.78 5.27 0.07 -12.86 16 9 C -0.29 -6.45 5.89 -104.73 -0.62 -7.07 16 10 C -0.06 -1.35 9.47 -39.60 -0.37 -1.73 16 11 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 12 C 0.13 3.23 5.57 -106.80 -0.59 2.63 16 13 C -0.44 -10.67 9.04 -37.75 -0.34 -11.01 16 14 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 15 C 0.07 1.66 5.15 -17.30 -0.09 1.57 16 16 N -0.77 -18.04 10.96 55.56 0.61 -17.43 16 17 Si 0.92 16.90 29.59 -169.99 -5.03 11.87 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 C -0.24 -5.65 9.73 -39.28 -0.38 -6.03 16 22 C -0.02 -0.42 9.52 -39.60 -0.38 -0.80 16 23 C -0.15 -2.10 9.97 -39.38 -0.39 -2.49 16 24 C -0.10 -1.26 9.69 -39.61 -0.38 -1.64 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.14 2.58 6.26 -52.49 -0.33 2.26 16 30 H 0.41 6.19 6.84 -40.82 -0.28 5.91 16 31 H 0.09 1.61 6.38 -52.49 -0.34 1.28 16 32 H 0.12 2.92 6.19 -52.49 -0.32 2.60 16 33 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 34 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 36 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -27.58 317.79 -9.28 -36.86 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -4.17 Total: 12.64 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -5.49 Total: -23.86 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.55 Total: -29.44 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.58 -9.28 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058243053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.993 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds