Wall clock time and date at job start Tue Mar 31 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 119.92501 * 2 1 4 4 C 1.38095 * 120.07600 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.92575 * 359.97438 * 4 3 2 6 6 N 1.39806 * 120.07526 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99900 * 35.49743 * 6 5 4 8 8 O 1.21604 * 120.00030 * 355.53988 * 7 6 5 9 9 C 1.47590 * 119.99871 * 175.27251 * 7 6 5 10 10 C 1.40039 * 119.89709 * 0.02562 * 9 7 6 11 11 C 1.36305 * 120.10258 * 179.71969 * 10 9 7 12 12 C 1.40897 * 119.89145 * 0.57785 * 11 10 9 13 13 C 1.41096 * 120.09765 * 179.67424 * 12 11 10 14 14 H 1.08001 * 119.99994 * 205.53129 * 13 12 11 15 15 C 1.40232 * 120.00068 * 25.53007 * 13 12 11 16 16 N 1.30652 * 119.99889 * 17.02847 * 15 13 12 17 17 Si 1.86795 * 120.00170 * 197.02175 * 15 13 12 18 18 H 1.48500 * 109.46945 * 90.00019 * 17 15 13 19 19 H 1.48497 * 109.47479 * 210.00023 * 17 15 13 20 20 H 1.48504 * 109.47040 * 330.00696 * 17 15 13 21 21 C 1.40888 * 119.80120 * 359.69290 * 12 11 10 22 22 C 1.36305 * 119.89271 * 0.02562 * 21 12 11 23 23 C 1.38904 * 119.84830 * 0.25531 * 5 4 3 24 24 C 1.38101 * 119.93055 * 359.51417 * 23 5 4 25 25 H 1.08997 * 109.47133 * 89.99548 * 1 2 3 26 26 H 1.09004 * 109.46789 * 209.99833 * 1 2 3 27 27 H 1.08998 * 109.47308 * 329.99659 * 1 2 3 28 28 H 1.08006 * 119.96432 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.04303 * 179.97438 * 4 3 2 30 30 H 0.96997 * 120.00247 * 215.49790 * 6 5 4 31 31 H 1.07998 * 119.94881 * 0.02562 * 10 9 7 32 32 H 1.08001 * 120.05005 * 180.27423 * 11 10 9 33 33 H 0.96996 * 119.99411 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.05945 * 179.97438 * 21 12 11 35 35 H 1.07997 * 119.94982 * 179.97438 * 22 21 12 36 36 H 1.08008 * 120.03527 * 179.72198 * 23 5 4 37 37 H 1.07993 * 119.96768 * 180.21180 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 0.0001 -0.0005 6 7 5.6721 0.0001 -0.0016 7 6 6.3465 0.9507 0.6752 8 8 5.7416 1.8546 1.2192 9 6 7.8187 0.8914 0.7611 10 6 8.5127 -0.1532 0.1381 11 6 9.8727 -0.2090 0.2100 12 6 10.5793 0.7799 0.9227 13 6 11.9867 0.7226 1.0057 14 1 12.4978 1.1838 1.8378 15 6 12.7218 0.0668 0.0077 16 7 12.1672 -0.1967 -1.1455 17 14 14.4939 -0.4299 0.3270 18 1 14.5283 -1.7980 0.9036 19 1 15.2510 -0.4120 -0.9504 20 1 15.1114 0.5252 1.2819 21 6 9.8764 1.8258 1.5527 22 6 8.5167 1.8765 1.4706 23 6 3.5779 -1.2019 -0.0054 24 6 2.1969 -1.1985 0.0000 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6551 2.1329 -0.0004 29 1 4.1161 2.1385 -0.0010 30 1 6.1568 -0.6840 -0.4894 31 1 7.9699 -0.9132 -0.4042 32 1 10.4074 -1.0126 -0.2745 33 1 12.6758 -0.6500 -1.8359 34 1 10.4138 2.5858 2.1004 35 1 7.9769 2.6776 1.9534 36 1 4.1162 -2.1383 -0.0099 37 1 1.6552 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058243053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:35 Heat of formation + Delta-G solvation = -17.072297 kcal Electronic energy + Delta-G solvation = -20100.904347 eV Core-core repulsion = 16999.398564 eV Total energy + Delta-G solvation = -3101.505784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51335 -39.84802 -38.81561 -36.00358 -35.71286 -32.86413 -31.86285 -31.62950 -31.33948 -28.20404 -26.77740 -24.16321 -23.70839 -22.90688 -22.18215 -21.15423 -19.42208 -19.03799 -17.98991 -17.23273 -16.48806 -16.26130 -16.05798 -15.78956 -15.32392 -15.08804 -14.80436 -14.52770 -14.45356 -14.30940 -13.94085 -13.72178 -13.33570 -13.12915 -12.91141 -12.88762 -12.67667 -12.50565 -12.37790 -12.00466 -11.77154 -11.40681 -11.17841 -11.11505 -10.68320 -9.84913 -9.63438 -9.50184 -8.91325 -8.81531 -6.52261 0.16889 0.48212 0.55413 1.11753 1.38377 1.42609 1.53117 2.04468 2.15759 2.22402 2.70287 2.89896 3.64532 3.91828 4.06081 4.15701 4.16252 4.25440 4.40218 4.48153 4.52836 4.68514 4.88884 4.89278 4.91885 4.99699 5.10762 5.12973 5.18700 5.25022 5.41863 5.44542 5.55462 5.64144 5.72029 5.77600 5.89934 5.95587 6.15497 6.18731 6.49801 6.56035 6.73206 6.84278 7.29127 8.12872 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.045020 B = 0.003077 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.791317 B = 9098.073005 C = 9545.093750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.111 4.111 3 C -0.111 4.111 4 C -0.146 4.146 5 C 0.123 3.877 6 N -0.670 5.670 7 C 0.571 3.429 8 O -0.584 6.584 9 C -0.296 4.296 10 C -0.053 4.053 11 C -0.196 4.196 12 C 0.103 3.897 13 C -0.469 4.469 14 H 0.087 0.913 15 C 0.037 3.963 16 N -0.796 5.796 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.257 1.257 21 C -0.252 4.252 22 C -0.029 4.029 23 C -0.148 4.148 24 C -0.101 4.101 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.298 0.702 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 -5.777 -1.894 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.130 4.130 4 C -0.166 4.166 5 C 0.029 3.971 6 N -0.315 5.315 7 C 0.367 3.633 8 O -0.467 6.467 9 C -0.300 4.300 10 C -0.072 4.072 11 C -0.215 4.215 12 C 0.099 3.901 13 C -0.496 4.496 14 H 0.105 0.895 15 C -0.182 4.182 16 N -0.420 5.420 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.181 1.181 21 C -0.272 4.272 22 C -0.048 4.048 23 C -0.168 4.168 24 C -0.119 4.119 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.127 0.873 30 H 0.257 0.743 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.162 0.838 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.250 -5.247 -1.760 14.359 hybrid contribution 1.346 -0.040 -0.164 1.357 sum -11.904 -5.287 -1.924 13.166 Atomic orbital electron populations 1.20787 0.88745 1.03632 1.03157 1.20289 0.97856 0.92540 1.00523 1.21137 0.92625 0.99130 1.00082 1.21296 0.95338 0.97429 1.02545 1.18118 0.82648 0.94993 1.01324 1.43329 1.04671 1.31766 1.51692 1.18563 0.87925 0.80454 0.76408 1.90620 1.70676 1.36175 1.49219 1.19041 0.90413 1.04412 1.16175 1.20732 0.94379 0.95874 0.96233 1.21015 0.93145 1.00938 1.06417 1.18160 0.94181 0.89265 0.88461 1.20156 0.91987 1.30008 1.07430 0.89497 1.26954 1.05842 0.92272 0.93172 1.69755 1.40981 1.27556 1.03661 0.85079 0.74993 0.79790 0.79245 1.18260 1.18914 1.18106 1.20870 0.93714 1.01367 1.11200 1.20501 0.93843 0.95903 0.94586 1.21195 0.95367 0.96203 1.04027 1.21185 0.92767 0.98850 0.99110 0.90151 0.90174 0.91193 0.84633 0.87257 0.74347 0.85790 0.86658 0.89066 0.87588 0.87826 0.83801 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.76 16 2 C -0.11 -2.40 5.88 -19.84 -0.12 -2.52 16 3 C -0.11 -2.95 9.69 22.25 0.22 -2.74 16 4 C -0.15 -4.93 8.69 22.40 0.19 -4.74 16 5 C 0.12 4.00 6.29 38.19 0.24 4.24 16 6 N -0.67 -23.28 5.28 -306.29 -1.62 -24.89 16 7 C 0.57 24.63 7.60 86.71 0.66 25.29 16 8 O -0.58 -28.12 13.78 -4.04 -0.06 -28.18 16 9 C -0.30 -13.54 5.89 -19.94 -0.12 -13.66 16 10 C -0.05 -2.32 9.47 22.26 0.21 -2.11 16 11 C -0.20 -9.56 8.63 22.47 0.19 -9.37 16 12 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 13 C -0.47 -23.34 9.04 23.46 0.21 -23.13 16 14 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 15 C 0.04 1.69 5.15 85.35 0.44 2.13 16 16 N -0.80 -37.48 10.96 21.87 0.24 -37.24 16 17 Si 0.99 34.19 29.59 68.60 2.03 36.22 16 18 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 19 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 21 C -0.25 -12.43 9.73 22.47 0.22 -12.21 16 22 C -0.03 -1.40 9.52 22.26 0.21 -1.19 16 23 C -0.15 -3.70 9.97 22.40 0.22 -3.48 16 24 C -0.10 -2.10 9.69 22.25 0.22 -1.88 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 27 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 28 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.11 4.30 6.26 -2.91 -0.02 4.28 16 30 H 0.42 12.24 6.84 -92.71 -0.63 11.61 16 31 H 0.12 4.36 6.38 -2.91 -0.02 4.34 16 32 H 0.12 5.68 6.19 -2.91 -0.02 5.66 16 33 H 0.30 12.43 8.29 -92.71 -0.77 11.66 16 34 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 35 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 36 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -61.65 317.79 4.66 -56.99 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.47 Total: 38.06 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 3.60 Total: -40.96 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.38 Total: -62.14 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.06 Total: -28.18 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -61.65 4.66 -56.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058243053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.914 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds