Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38312 * 119.96555 * 2 1 4 4 C 1.38265 * 120.14848 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07559 * 359.68691 * 4 3 2 6 6 C 1.38884 * 119.92223 * 0.56701 * 5 4 3 7 7 N 1.39803 * 120.07329 * 179.72249 * 6 5 4 8 8 C 1.34774 * 120.00494 * 324.24405 * 7 6 5 9 9 O 1.21631 * 119.99462 * 5.23636 * 8 7 6 10 10 C 1.47382 * 120.00475 * 185.23825 * 8 7 6 11 11 C 1.39249 * 120.28483 * 354.20739 * 10 8 7 12 12 C 1.38200 * 120.08969 * 180.30196 * 11 10 8 13 13 C 1.38838 * 120.68016 * 359.66829 * 12 11 10 14 14 C 1.37580 * 120.57728 * 0.02938 * 13 12 11 15 15 C 1.40718 * 119.88285 * 359.97438 * 14 13 12 16 16 C 1.40865 * 120.33200 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00325 * 146.89783 * 16 15 14 18 18 C 1.40282 * 119.99684 * 326.89092 * 16 15 14 19 19 N 1.30625 * 120.00216 * 338.76832 * 18 16 15 20 20 Si 1.86806 * 119.99988 * 158.76973 * 18 16 15 21 21 H 1.48498 * 109.47351 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.46920 * 300.00349 * 20 18 16 23 23 H 1.48504 * 109.46913 * 60.00051 * 20 18 16 24 24 C 1.38077 * 119.96385 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47065 * 270.02272 * 1 2 3 26 26 H 1.09002 * 109.46814 * 30.01516 * 1 2 3 27 27 H 1.08998 * 109.46992 * 150.01600 * 1 2 3 28 28 H 1.07997 * 119.92703 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.96624 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.04197 * 180.30006 * 5 4 3 31 31 H 0.97008 * 120.00057 * 144.23745 * 7 6 5 32 32 H 1.07996 * 119.95815 * 359.97438 * 11 10 8 33 33 H 1.08002 * 119.66304 * 179.69626 * 12 11 10 34 34 H 1.08009 * 119.70926 * 180.02562 * 13 12 11 35 35 H 1.08003 * 120.06073 * 180.02562 * 14 13 12 36 36 H 0.96999 * 120.00351 * 354.15803 * 19 18 16 37 37 H 1.08000 * 120.03578 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5805 1.2026 -0.0005 5 6 4.2765 0.0096 0.0055 6 6 3.5859 -1.1954 0.0001 7 7 4.2872 -2.4048 0.0003 8 6 5.4474 -2.5112 -0.6773 9 8 5.9328 -1.5311 -1.2095 10 6 6.1277 -3.8150 -0.7735 11 6 5.6433 -4.9137 -0.0683 12 6 6.2881 -6.1329 -0.1566 13 6 7.4175 -6.2811 -0.9503 14 6 7.9163 -5.2157 -1.6637 15 6 7.2787 -3.9634 -1.5913 16 6 7.7810 -2.8663 -2.3182 17 1 7.1033 -2.1224 -2.7103 18 6 9.1616 -2.7400 -2.5327 19 7 10.0036 -3.3601 -1.7500 20 14 9.7958 -1.6848 -3.9377 21 1 11.2804 -1.7167 -3.9496 22 1 9.2795 -2.2133 -5.2258 23 1 9.3317 -0.2861 -3.7549 24 6 2.1966 -1.1962 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6561 2.1325 0.0004 29 1 4.1169 2.1400 -0.0001 30 1 5.3564 0.0137 0.0099 31 1 3.9389 -3.1674 0.4883 32 1 4.7656 -4.8116 0.5526 33 1 5.9092 -6.9792 0.3972 34 1 7.9089 -7.2412 -1.0081 35 1 8.7952 -5.3405 -2.2788 36 1 9.6795 -3.8384 -0.9708 37 1 1.6566 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = -0.873589 kcal Electronic energy + Delta-G solvation = -20847.053171 eV Core-core repulsion = 17746.249815 eV Total energy + Delta-G solvation = -3100.803355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99543 -38.44772 -36.99275 -34.48794 -33.83027 -32.27615 -30.50428 -29.59922 -28.82808 -26.70480 -25.36031 -23.16367 -22.06897 -21.40943 -20.77690 -19.28040 -18.26677 -17.03683 -16.19334 -15.89171 -15.03855 -14.77878 -14.37743 -14.29975 -13.92846 -13.71723 -13.62216 -13.41051 -12.85267 -12.67326 -12.33502 -12.25549 -12.04490 -11.77828 -11.44427 -11.20103 -10.99264 -10.94130 -10.80511 -10.41017 -10.22055 -9.78880 -9.70435 -9.13349 -8.66428 -8.44112 -7.92132 -7.73057 -7.65992 -7.23820 -4.55588 1.56108 1.62729 2.17592 2.67218 3.16575 3.26422 3.36905 3.70805 3.81155 3.98252 4.13694 4.54423 4.95515 5.03906 5.29957 5.37180 5.41921 5.55553 5.61732 5.72536 5.77412 5.86429 5.88996 6.04620 6.07690 6.25832 6.40318 6.62671 6.65374 6.73496 6.81560 6.90804 6.94041 7.18772 7.40731 7.41797 7.51753 7.64741 7.79852 7.97688 8.11255 8.18247 8.63180 8.75061 9.14520 9.93640 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.005199 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.149683 B = 5383.925605 C = 6729.313282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.130 4.130 6 C 0.171 3.829 7 N -0.690 5.690 8 C 0.561 3.439 9 O -0.517 6.517 10 C -0.271 4.271 11 C -0.042 4.042 12 C -0.258 4.258 13 C -0.074 4.074 14 C -0.199 4.199 15 C 0.121 3.879 16 C -0.462 4.462 17 H 0.106 0.894 18 C 0.033 3.967 19 N -0.785 5.785 20 Si 1.069 2.931 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.159 4.159 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.299 0.701 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 3.570 3.302 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.170 4.170 4 C -0.118 4.118 5 C -0.150 4.150 6 C 0.076 3.924 7 N -0.336 5.336 8 C 0.358 3.642 9 O -0.395 6.395 10 C -0.276 4.276 11 C -0.061 4.061 12 C -0.278 4.278 13 C -0.093 4.093 14 C -0.218 4.218 15 C 0.116 3.884 16 C -0.489 4.489 17 H 0.124 0.876 18 C -0.190 4.190 19 N -0.408 5.408 20 Si 0.891 3.109 21 H -0.198 1.198 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.180 4.180 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.159 0.841 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.660 4.656 2.143 10.935 hybrid contribution -1.622 -1.133 1.191 2.310 sum -11.282 3.523 3.335 12.281 Atomic orbital electron populations 1.20743 0.91447 1.02498 1.01967 1.19590 0.95565 0.92685 0.99613 1.20881 0.94231 0.97084 1.04785 1.21022 0.93974 0.97726 0.99032 1.21432 1.01686 0.90806 1.01093 1.17834 0.90574 0.86552 0.97475 1.43767 1.24547 1.12061 1.53198 1.18538 0.78927 0.89815 0.76964 1.90683 1.63446 1.39098 1.46234 1.19231 1.06306 0.91679 1.10391 1.20708 0.96448 0.93020 0.95889 1.20241 1.01399 0.96961 1.09162 1.20757 0.95432 0.97180 0.95945 1.21255 1.03238 0.92786 1.04490 1.17456 0.89964 0.92709 0.88244 1.21208 0.95235 1.07273 1.25135 0.87650 1.27303 0.93574 0.97004 1.01090 1.70385 1.39661 1.20210 1.10497 0.83584 0.76628 0.76263 0.74395 1.19812 1.19859 1.19668 1.20750 0.92287 0.98031 1.06933 0.91457 0.91726 0.91776 0.86617 0.86148 0.84131 0.76204 0.89119 0.88762 0.88752 0.87438 0.88727 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 2 C -0.07 -0.97 5.88 -104.66 -0.62 -1.59 16 3 C -0.15 -2.00 9.70 -39.54 -0.38 -2.39 16 4 C -0.10 -1.48 10.04 -39.61 -0.40 -1.88 16 5 C -0.13 -2.35 8.69 -39.38 -0.34 -2.69 16 6 C 0.17 3.02 6.29 -83.73 -0.53 2.49 16 7 N -0.69 -12.76 5.28 -10.85 -0.06 -12.82 16 8 C 0.56 12.92 7.56 -12.54 -0.09 12.82 16 9 O -0.52 -13.35 11.04 5.25 0.06 -13.29 16 10 C -0.27 -6.48 5.92 -104.37 -0.62 -7.09 16 11 C -0.04 -0.86 9.53 -39.22 -0.37 -1.24 16 12 C -0.26 -5.29 10.03 -39.37 -0.39 -5.68 16 13 C -0.07 -1.60 10.01 -39.60 -0.40 -2.00 16 14 C -0.20 -4.84 7.93 -38.89 -0.31 -5.15 16 15 C 0.12 3.15 5.17 -106.54 -0.55 2.60 16 16 C -0.46 -12.44 7.65 -37.82 -0.29 -12.73 16 17 H 0.11 2.97 5.95 -52.49 -0.31 2.66 16 18 C 0.03 0.84 5.00 -17.30 -0.09 0.75 16 19 N -0.78 -20.56 12.54 55.56 0.70 -19.86 16 20 Si 1.07 22.08 29.99 -169.99 -5.10 16.98 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.16 -2.34 9.62 -39.38 -0.38 -2.72 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.14 2.89 6.25 -52.49 -0.33 2.56 16 31 H 0.40 6.25 6.88 -40.82 -0.28 5.97 16 32 H 0.09 1.53 6.42 -52.49 -0.34 1.19 16 33 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.11 2.67 6.93 -52.48 -0.36 2.30 16 36 H 0.30 8.01 6.70 -40.82 -0.27 7.74 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -29.08 312.92 -9.15 -38.23 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.07 Total: 13.22 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -5.40 Total: -27.19 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.64 Total: -32.68 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.06 Total: -13.29 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.10 Total: 16.98 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.08 -9.15 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.358 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds