Wall clock time and date at job start Tue Mar 31 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38312 * 119.96555 * 2 1 4 4 C 1.38265 * 120.14848 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07559 * 359.68691 * 4 3 2 6 6 C 1.38884 * 119.92223 * 0.56701 * 5 4 3 7 7 N 1.39803 * 120.07329 * 179.72249 * 6 5 4 8 8 C 1.34774 * 120.00494 * 324.24405 * 7 6 5 9 9 O 1.21631 * 119.99462 * 5.23636 * 8 7 6 10 10 C 1.47382 * 120.00475 * 185.23825 * 8 7 6 11 11 C 1.39249 * 120.28483 * 354.20739 * 10 8 7 12 12 C 1.38200 * 120.08969 * 180.30196 * 11 10 8 13 13 C 1.38838 * 120.68016 * 359.66829 * 12 11 10 14 14 C 1.37580 * 120.57728 * 0.02938 * 13 12 11 15 15 C 1.40718 * 119.88285 * 359.97438 * 14 13 12 16 16 C 1.40865 * 120.33200 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00325 * 146.89783 * 16 15 14 18 18 C 1.40282 * 119.99684 * 326.89092 * 16 15 14 19 19 N 1.30625 * 120.00216 * 338.76832 * 18 16 15 20 20 Si 1.86806 * 119.99988 * 158.76973 * 18 16 15 21 21 H 1.48498 * 109.47351 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.46920 * 300.00349 * 20 18 16 23 23 H 1.48504 * 109.46913 * 60.00051 * 20 18 16 24 24 C 1.38077 * 119.96385 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47065 * 270.02272 * 1 2 3 26 26 H 1.09002 * 109.46814 * 30.01516 * 1 2 3 27 27 H 1.08998 * 109.46992 * 150.01600 * 1 2 3 28 28 H 1.07997 * 119.92703 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.96624 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.04197 * 180.30006 * 5 4 3 31 31 H 0.97008 * 120.00057 * 144.23745 * 7 6 5 32 32 H 1.07996 * 119.95815 * 359.97438 * 11 10 8 33 33 H 1.08002 * 119.66304 * 179.69626 * 12 11 10 34 34 H 1.08009 * 119.70926 * 180.02562 * 13 12 11 35 35 H 1.08003 * 120.06073 * 180.02562 * 14 13 12 36 36 H 0.96999 * 120.00351 * 354.15803 * 19 18 16 37 37 H 1.08000 * 120.03578 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5805 1.2026 -0.0005 5 6 4.2765 0.0096 0.0055 6 6 3.5859 -1.1954 0.0001 7 7 4.2872 -2.4048 0.0003 8 6 5.4474 -2.5112 -0.6773 9 8 5.9328 -1.5311 -1.2095 10 6 6.1277 -3.8150 -0.7735 11 6 5.6433 -4.9137 -0.0683 12 6 6.2881 -6.1329 -0.1566 13 6 7.4175 -6.2811 -0.9503 14 6 7.9163 -5.2157 -1.6637 15 6 7.2787 -3.9634 -1.5913 16 6 7.7810 -2.8663 -2.3182 17 1 7.1033 -2.1224 -2.7103 18 6 9.1616 -2.7400 -2.5327 19 7 10.0036 -3.3601 -1.7500 20 14 9.7958 -1.6848 -3.9377 21 1 11.2804 -1.7167 -3.9496 22 1 9.2795 -2.2133 -5.2258 23 1 9.3317 -0.2861 -3.7549 24 6 2.1966 -1.1962 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6561 2.1325 0.0004 29 1 4.1169 2.1400 -0.0001 30 1 5.3564 0.0137 0.0099 31 1 3.9389 -3.1674 0.4883 32 1 4.7656 -4.8116 0.5526 33 1 5.9092 -6.9792 0.3972 34 1 7.9089 -7.2412 -1.0081 35 1 8.7952 -5.3405 -2.2788 36 1 9.6795 -3.8384 -0.9708 37 1 1.6566 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058248212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:37 Heat of formation + Delta-G solvation = -16.363192 kcal Electronic energy + Delta-G solvation = -20847.724850 eV Core-core repulsion = 17746.249815 eV Total energy + Delta-G solvation = -3101.475035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51468 -39.93229 -38.67492 -36.17321 -35.52925 -33.39540 -32.14387 -31.38171 -30.25849 -27.69660 -27.20144 -24.80717 -23.34592 -22.99371 -22.38234 -20.84034 -20.06855 -18.59498 -17.68282 -17.16494 -16.61226 -16.29080 -16.08376 -16.00164 -15.58018 -15.09611 -14.90301 -14.56276 -14.43841 -14.08181 -13.94369 -13.82760 -13.12288 -12.98722 -12.95719 -12.76208 -12.59324 -12.45165 -12.06238 -12.01540 -11.95626 -11.51793 -11.18296 -10.98729 -10.38151 -9.71766 -9.65467 -9.55617 -9.21963 -8.98031 -6.51440 0.17532 0.44652 0.54637 0.87443 1.44466 1.59312 1.74506 2.12464 2.23682 2.27354 2.66631 2.87871 3.51067 3.92561 3.99448 4.14709 4.17955 4.26597 4.39814 4.46499 4.53477 4.59952 4.75580 4.83592 4.90376 4.90809 4.99109 5.09263 5.27471 5.36624 5.43291 5.49810 5.59942 5.62166 5.66910 5.69730 5.84646 5.91733 6.13221 6.17819 6.28767 6.56815 6.77598 6.83237 7.43940 7.97409 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.005199 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.149683 B = 5383.925605 C = 6729.313282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.162 4.162 6 C 0.140 3.860 7 N -0.673 5.673 8 C 0.556 3.444 9 O -0.556 6.556 10 C -0.289 4.289 11 C -0.041 4.041 12 C -0.243 4.243 13 C -0.069 4.069 14 C -0.224 4.224 15 C 0.098 3.902 16 C -0.508 4.508 17 H 0.080 0.920 18 C 0.001 3.999 19 N -0.808 5.808 20 Si 1.113 2.887 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.272 1.272 24 C -0.156 4.156 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.416 0.584 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.283 0.717 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 2.955 4.334 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.071 4.071 3 C -0.161 4.161 4 C -0.123 4.123 5 C -0.183 4.183 6 C 0.045 3.955 7 N -0.320 5.320 8 C 0.351 3.649 9 O -0.435 6.435 10 C -0.294 4.294 11 C -0.059 4.059 12 C -0.262 4.262 13 C -0.088 4.088 14 C -0.244 4.244 15 C 0.094 3.906 16 C -0.535 4.535 17 H 0.098 0.902 18 C -0.215 4.215 19 N -0.432 5.432 20 Si 0.930 3.070 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.197 1.197 24 C -0.176 4.176 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.255 0.745 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.183 4.020 3.208 14.151 hybrid contribution -0.846 -0.998 1.057 1.682 sum -14.030 3.023 4.265 14.972 Atomic orbital electron populations 1.20826 0.88225 1.03844 1.03508 1.20119 0.97804 0.91862 0.97299 1.21312 0.93345 0.98870 1.02580 1.21243 0.95239 0.97153 0.98685 1.21302 1.00170 0.92846 1.03943 1.18080 0.91891 0.85661 0.99828 1.43396 1.23157 1.13172 1.52250 1.18596 0.79963 0.89179 0.77114 1.90671 1.64848 1.40124 1.47883 1.19636 1.05978 0.93355 1.10386 1.21152 0.97584 0.91991 0.95213 1.20809 0.99906 0.98039 1.07482 1.21182 0.95526 0.97533 0.94538 1.21210 1.03606 0.93363 1.06192 1.17847 0.91106 0.93181 0.88480 1.21108 0.95710 1.08074 1.28599 0.90250 1.28458 0.93492 0.97284 1.02310 1.70492 1.39305 1.22489 1.10868 0.83058 0.76680 0.74750 0.72479 1.18619 1.18336 1.19727 1.21026 0.90785 0.99958 1.05845 0.89634 0.90082 0.90857 0.83123 0.84648 0.88037 0.74520 0.84751 0.84393 0.85567 0.89073 0.90438 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.07 -1.60 5.88 -19.89 -0.12 -1.72 16 3 C -0.14 -3.37 9.70 22.29 0.22 -3.15 16 4 C -0.10 -3.10 10.04 22.25 0.22 -2.87 16 5 C -0.16 -6.13 8.69 22.40 0.19 -5.93 16 6 C 0.14 4.93 6.29 38.19 0.24 5.17 16 7 N -0.67 -24.92 5.28 -306.48 -1.62 -26.54 16 8 C 0.56 26.64 7.56 86.65 0.65 27.29 16 9 O -0.56 -30.85 11.04 -4.13 -0.05 -30.89 16 10 C -0.29 -14.06 5.92 -19.70 -0.12 -14.17 16 11 C -0.04 -1.60 9.53 22.50 0.21 -1.38 16 12 C -0.24 -9.10 10.03 22.40 0.22 -8.88 16 13 C -0.07 -2.88 10.01 22.26 0.22 -2.66 16 14 C -0.22 -11.27 7.93 22.72 0.18 -11.09 16 15 C 0.10 5.35 5.17 -21.11 -0.11 5.24 16 16 C -0.51 -29.37 7.65 23.41 0.18 -29.19 16 17 H 0.08 4.89 5.95 -2.91 -0.02 4.87 16 18 C 0.00 0.06 5.00 85.37 0.43 0.48 16 19 N -0.81 -44.94 12.54 21.88 0.27 -44.66 16 20 Si 1.11 47.07 29.99 68.60 2.06 49.13 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 C -0.16 -4.21 9.62 22.40 0.22 -4.00 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 27 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 28 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.10 4.59 6.25 -2.91 -0.02 4.57 16 31 H 0.42 12.24 6.88 -92.70 -0.64 11.60 16 32 H 0.13 3.99 6.42 -2.91 -0.02 3.97 16 33 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.09 4.78 6.93 -2.91 -0.02 4.76 16 36 H 0.28 16.24 6.70 -92.71 -0.62 15.62 16 37 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -69.79 312.92 4.84 -64.95 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.61 Total: 35.71 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 3.56 Total: -47.69 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.34 Total: -71.20 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.06 Total: 49.13 kcal Total: -69.79 4.84 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.584 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds