Wall clock time and date at job start Tue Mar 31 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.92700 * 2 1 4 4 C 1.38108 * 120.07689 * 180.02562 * 3 2 1 5 5 C 1.38904 * 119.91925 * 359.97438 * 4 3 2 6 6 N 1.39808 * 120.07190 * 179.97438 * 5 4 3 7 7 C 1.34779 * 119.99951 * 143.17631 * 6 5 4 8 8 O 1.21626 * 119.99910 * 4.79844 * 7 6 5 9 9 C 1.47379 * 119.99867 * 184.80325 * 7 6 5 10 10 C 1.39255 * 120.28901 * 353.83264 * 9 7 6 11 11 C 1.38200 * 120.09484 * 179.97438 * 10 9 7 12 12 C 1.38841 * 120.67681 * 0.02562 * 11 10 9 13 13 C 1.37584 * 120.57648 * 0.02562 * 12 11 10 14 14 C 1.40704 * 119.88496 * 359.97438 * 13 12 11 15 15 C 1.40872 * 120.33283 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00205 * 143.51696 * 15 14 13 17 17 C 1.40284 * 119.99673 * 323.51702 * 15 14 13 18 18 N 1.30624 * 119.99925 * 172.05158 * 17 15 14 19 19 Si 1.86797 * 120.00133 * 352.05425 * 17 15 14 20 20 H 1.48502 * 109.47521 * 89.66836 * 19 17 15 21 21 H 1.48503 * 109.47157 * 209.67194 * 19 17 15 22 22 H 1.48502 * 109.46936 * 329.66800 * 19 17 15 23 23 C 1.38902 * 119.85525 * 0.27299 * 5 4 3 24 24 C 1.38105 * 119.92580 * 359.44941 * 23 5 4 25 25 H 1.09000 * 109.46940 * 89.99540 * 1 2 3 26 26 H 1.08996 * 109.47181 * 210.00490 * 1 2 3 27 27 H 1.09003 * 109.47267 * 330.00467 * 1 2 3 28 28 H 1.08005 * 119.96463 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.03702 * 180.02562 * 4 3 2 30 30 H 0.96998 * 119.99902 * 323.17783 * 6 5 4 31 31 H 1.08004 * 119.95103 * 359.97438 * 10 9 7 32 32 H 1.07994 * 119.66074 * 180.27613 * 11 10 9 33 33 H 1.08007 * 119.70842 * 179.97438 * 12 11 10 34 34 H 1.08000 * 120.05670 * 179.97438 * 13 12 11 35 35 H 0.97005 * 120.00138 * 180.02562 * 18 17 15 36 36 H 1.08009 * 120.03796 * 179.72627 * 23 5 4 37 37 H 1.08005 * 119.96198 * 180.25601 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2021 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6721 -0.0001 -0.0016 7 6 6.3464 -0.9342 0.6979 8 8 5.7419 -1.8283 1.2584 9 6 7.8164 -0.8719 0.7836 10 6 8.5239 0.0707 0.0419 11 6 9.9023 0.1259 0.1257 12 6 10.5978 -0.7528 0.9454 13 6 9.9269 -1.6958 1.6894 14 6 8.5236 -1.7731 1.6222 15 6 7.8270 -2.7346 2.3804 16 1 6.8685 -2.4897 2.8137 17 6 8.3783 -4.0102 2.5726 18 7 7.8126 -4.8484 3.3994 19 14 9.9215 -4.5099 1.6462 20 1 11.1189 -4.1370 2.4414 21 1 9.9121 -5.9782 1.4244 22 1 9.9603 -3.8117 0.3361 23 6 3.5779 -1.2020 -0.0057 24 6 2.1969 -1.1985 0.0006 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6551 2.1328 -0.0004 29 1 4.1161 2.1384 -0.0001 30 1 6.1567 0.6721 -0.5058 31 1 7.9947 0.7597 -0.5998 32 1 10.4436 0.8626 -0.4491 33 1 11.6751 -0.6961 0.9987 34 1 10.4764 -2.3754 2.3239 35 1 8.1941 -5.7303 3.5325 36 1 4.1161 -2.1385 -0.0102 37 1 1.6550 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:41 Heat of formation + Delta-G solvation = 9.259566 kcal Electronic energy + Delta-G solvation = -20832.962280 eV Core-core repulsion = 17732.598332 eV Total energy + Delta-G solvation = -3100.363949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98089 -38.46810 -37.02244 -34.53077 -33.63738 -31.53720 -30.69441 -30.52364 -29.85467 -26.31869 -25.23210 -22.78697 -22.52931 -21.59407 -20.58748 -19.51959 -17.87338 -17.13909 -16.55141 -15.50910 -15.16684 -14.92965 -14.46086 -14.16493 -13.98424 -13.72071 -13.55756 -13.39257 -13.09077 -12.77493 -12.55543 -12.24290 -12.06803 -11.86225 -11.58588 -11.37798 -10.99163 -10.88163 -10.80779 -10.50789 -10.15711 -9.87067 -9.62703 -9.31690 -8.75470 -8.50183 -7.94214 -7.71222 -7.55689 -6.96911 -4.55581 1.53549 1.68775 2.04891 2.53346 3.04185 3.13495 3.23895 3.71685 3.78601 3.90400 4.12901 4.52493 5.01204 5.07857 5.27039 5.30315 5.41988 5.62046 5.63960 5.69254 5.70931 5.86849 5.95188 5.99895 6.07740 6.23009 6.34412 6.41981 6.57883 6.70668 6.74729 6.85703 6.96426 7.02153 7.13980 7.30446 7.43678 7.51900 7.66348 7.92801 8.12484 8.38430 8.53897 8.74891 9.15017 10.00430 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.004922 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.051424 B = 5687.631769 C = 6762.833721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.154 4.154 5 C 0.162 3.838 6 N -0.690 5.690 7 C 0.558 3.442 8 O -0.507 6.507 9 C -0.253 4.253 10 C -0.040 4.040 11 C -0.253 4.253 12 C -0.063 4.063 13 C -0.226 4.226 14 C 0.118 3.882 15 C -0.393 4.393 16 H 0.117 0.883 17 C 0.078 3.922 18 N -0.790 5.790 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.243 1.243 23 C -0.118 4.118 24 C -0.102 4.102 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.402 0.598 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.288 0.712 36 H 0.140 0.860 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 8.229 -7.199 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.174 4.174 5 C 0.067 3.933 6 N -0.337 5.337 7 C 0.353 3.647 8 O -0.382 6.382 9 C -0.257 4.257 10 C -0.059 4.059 11 C -0.272 4.272 12 C -0.082 4.082 13 C -0.245 4.245 14 C 0.113 3.887 15 C -0.420 4.420 16 H 0.135 0.865 17 C -0.143 4.143 18 N -0.413 5.413 19 Si 0.737 3.263 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.166 1.166 23 C -0.138 4.138 24 C -0.120 4.120 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.238 0.762 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.158 0.842 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.350 7.293 -6.591 11.703 hybrid contribution 1.046 0.096 -0.513 1.169 sum -5.305 7.389 -7.103 11.541 Atomic orbital electron populations 1.20702 0.91652 1.02331 1.01713 1.19798 0.95749 0.93254 1.03188 1.20699 0.93323 0.97263 1.01048 1.20886 0.94411 0.96521 1.05617 1.17817 0.83438 0.93681 0.98399 1.43741 1.03799 1.34332 1.51797 1.18521 0.88132 0.80623 0.77403 1.90769 1.69566 1.33080 1.44800 1.19283 0.90407 1.07638 1.08415 1.20778 0.94301 0.95071 0.95743 1.20292 0.93704 1.05166 1.08057 1.20759 0.97857 0.94736 0.94829 1.21190 0.94793 1.02944 1.05574 1.17514 0.90828 0.91663 0.88704 1.20045 1.06103 0.94509 1.21347 0.86533 1.26363 0.97883 0.96696 0.93318 1.69551 1.37796 1.07321 1.26646 0.86356 0.80592 0.76869 0.82478 1.19350 1.21605 1.16605 1.21393 0.93935 0.98419 1.00075 1.20921 0.93758 0.97348 1.00015 0.91763 0.91865 0.92018 0.86334 0.86144 0.76216 0.88665 0.88370 0.88420 0.87558 0.90113 0.84211 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.12 -1.59 5.88 -104.59 -0.62 -2.20 16 3 C -0.10 -1.36 9.69 -39.61 -0.38 -1.75 16 4 C -0.15 -2.21 9.97 -39.38 -0.39 -2.60 16 5 C 0.16 2.81 6.26 -83.73 -0.52 2.28 16 6 N -0.69 -12.37 5.28 -10.85 -0.06 -12.43 16 7 C 0.56 12.59 7.55 -12.54 -0.09 12.50 16 8 O -0.51 -13.18 11.20 5.25 0.06 -13.12 16 9 C -0.25 -5.81 5.92 -104.37 -0.62 -6.43 16 10 C -0.04 -0.78 9.52 -39.22 -0.37 -1.15 16 11 C -0.25 -4.83 10.03 -39.37 -0.39 -5.23 16 12 C -0.06 -1.28 10.01 -39.60 -0.40 -1.68 16 13 C -0.23 -5.24 6.98 -38.89 -0.27 -5.51 16 14 C 0.12 2.98 5.07 -106.54 -0.54 2.44 16 15 C -0.39 -10.86 8.15 -37.82 -0.31 -11.17 16 16 H 0.12 3.57 6.26 -52.49 -0.33 3.24 16 17 C 0.08 2.06 5.49 -17.30 -0.10 1.97 16 18 N -0.79 -21.23 13.92 55.56 0.77 -20.45 16 19 Si 0.91 20.49 24.46 -169.99 -4.16 16.33 16 20 H -0.27 -5.70 6.65 56.52 0.38 -5.33 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.24 -5.59 6.74 56.52 0.38 -5.21 16 23 C -0.12 -2.13 8.68 -39.38 -0.34 -2.47 16 24 C -0.10 -1.55 9.69 -39.61 -0.38 -1.93 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.40 5.90 6.88 -40.82 -0.28 5.62 16 31 H 0.10 1.48 6.42 -52.48 -0.34 1.14 16 32 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.11 2.42 4.76 -52.49 -0.25 2.17 16 35 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 36 H 0.14 2.86 6.37 -52.48 -0.33 2.53 16 37 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -29.73 307.87 -8.21 -37.94 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.09 Total: 10.74 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -5.37 Total: -23.64 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.72 Total: -32.89 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.06 Total: -13.12 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.16 Total: 16.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.73 -8.21 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.196 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds