Wall clock time and date at job start Tue Mar 31 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48501 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47278 * 300.00503 * 3 2 1 6 6 H 1.48510 * 109.47116 * 60.00335 * 3 2 1 7 7 C 1.37877 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47213 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47111 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99588 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00434 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99575 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.96995 * 120.00556 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47543 * 59.99886 * 9 7 2 25 25 H 1.09000 * 109.46926 * 299.99918 * 9 7 2 26 26 H 1.09005 * 109.47322 * 60.00169 * 10 9 7 27 27 H 1.08991 * 109.47114 * 299.99925 * 10 9 7 28 28 H 1.09008 * 109.47046 * 60.00054 * 11 10 9 29 29 H 1.09003 * 109.47659 * 299.99877 * 11 10 9 30 30 H 0.96992 * 119.99723 * 0.02562 * 12 11 10 31 31 H 1.08997 * 109.47561 * 59.99923 * 15 13 12 32 32 H 1.09000 * 109.46976 * 299.99617 * 15 13 12 33 33 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 34 34 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 35 35 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 36 36 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 37 37 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 38 38 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 39 39 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9870 0.0001 12 7 2.4327 -6.1005 -0.0005 13 6 1.9834 -7.3712 -0.0006 14 8 0.7910 -7.5929 0.0003 15 6 2.9628 -8.5166 -0.0007 16 6 2.1979 -9.8416 -0.0014 17 6 3.1922 -11.0045 -0.0021 18 6 2.4388 -12.3097 -0.0023 19 6 2.0540 -12.9753 -1.0923 20 6 1.3736 -14.1552 -0.8454 21 6 1.2063 -14.4481 0.4451 22 16 1.9390 -13.1921 1.4347 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6249 -2.5570 0.8897 26 1 2.8721 -3.6042 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 0.8536 -5.0450 -0.8897 29 1 0.8542 -5.0446 0.8903 30 1 3.3863 -5.9231 -0.0008 31 1 3.5895 -8.4589 0.8893 32 1 3.5894 -8.4588 -0.8907 33 1 1.5715 -9.8991 -0.8916 34 1 1.5709 -9.8998 0.8883 35 1 3.8188 -10.9473 0.8879 36 1 3.8188 -10.9462 -0.8921 37 1 2.2575 -12.6203 -2.0918 38 1 1.0067 -14.7910 -1.6377 39 1 0.7017 -15.3244 0.8243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:47 Heat of formation + Delta-G solvation = -60.973103 kcal Electronic energy + Delta-G solvation = -18079.249187 eV Core-core repulsion = 15111.283673 eV Total energy + Delta-G solvation = -2967.965514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.74067 -38.86607 -37.03662 -35.64414 -35.17652 -33.09074 -31.38414 -28.85021 -27.43956 -25.22060 -24.16716 -22.57016 -22.30741 -21.03306 -20.11875 -18.58194 -18.27430 -17.53149 -17.01709 -16.80176 -16.42761 -16.32043 -16.01930 -14.99893 -14.83996 -14.49538 -14.24657 -13.81197 -13.76531 -13.66924 -13.42822 -13.28618 -12.78136 -12.72083 -12.55334 -12.45648 -12.36415 -12.29968 -11.73827 -11.68099 -11.59416 -11.49125 -11.22959 -10.79455 -10.57092 -10.06400 -9.52329 -9.38297 -8.20243 -6.31972 0.11087 0.75784 1.12726 1.41646 1.41796 1.55162 1.69986 1.86583 2.28548 2.43051 3.13489 3.75145 3.81870 4.06291 4.18120 4.20890 4.23938 4.30037 4.47615 4.54982 4.61551 4.74094 4.74394 4.76655 4.91885 4.93882 5.03566 5.11937 5.16688 5.30208 5.36849 5.42969 5.47387 5.54448 5.64032 5.69733 5.83497 6.21367 6.64349 6.86137 7.33419 7.37912 8.92120 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.061327 B = 0.001975 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.457816 B =14170.396024 C =14274.189450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.717 5.717 13 C 0.499 3.501 14 O -0.597 6.597 15 C -0.128 4.128 16 C -0.094 4.094 17 C -0.043 4.043 18 C -0.179 4.179 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.224 4.224 22 S 0.069 5.931 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.010 1.010 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.417 0.583 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 -28.491 -0.352 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.369 5.369 13 C 0.288 3.712 14 O -0.478 6.478 15 C -0.167 4.167 16 C -0.133 4.133 17 C -0.082 4.082 18 C -0.296 4.296 19 C -0.184 4.184 20 C -0.173 4.173 21 C -0.359 4.359 22 S 0.332 5.668 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.255 0.745 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 10.114 -28.320 1.208 30.096 hybrid contribution -0.310 0.886 -1.419 1.702 sum 9.803 -27.433 -0.211 29.133 Atomic orbital electron populations 1.70119 1.07994 1.27749 1.51769 1.26061 0.95776 1.03690 0.94811 0.85338 0.79223 0.78501 0.77595 1.18068 1.20602 1.20613 1.21718 0.93803 0.91952 1.50299 0.91390 1.18965 0.94518 0.93182 0.94952 1.21586 0.98360 0.91725 1.02192 1.21189 0.92160 0.85993 1.00278 1.46040 1.11137 1.05176 1.74552 1.21631 0.89988 0.84984 0.74589 1.90693 1.19745 1.85546 1.51861 1.21719 0.97371 0.90273 1.07373 1.21253 0.97512 0.92273 1.02236 1.20212 0.96108 0.86857 1.05071 1.24776 1.07180 1.02255 0.95431 1.20440 1.01785 0.96104 1.00051 1.20479 1.01503 0.98311 0.97009 1.25891 1.08742 1.04419 0.96818 1.84386 1.54704 1.16813 1.10847 0.92822 0.99085 0.99126 0.91279 0.91224 0.93639 0.93697 0.74535 0.85888 0.85530 0.92691 0.93336 0.89277 0.87644 0.83060 0.82586 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.13 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.55 5.67 86.38 0.49 5.04 16 12 N -0.72 -18.73 5.56 -463.03 -2.57 -21.30 16 13 C 0.50 13.50 7.83 87.66 0.69 14.19 16 14 O -0.60 -22.64 15.98 -3.03 -0.05 -22.69 16 15 C -0.13 -1.93 5.70 29.85 0.17 -1.76 16 16 C -0.09 -1.69 4.49 30.59 0.14 -1.55 16 17 C -0.04 -0.54 5.71 29.85 0.17 -0.37 16 18 C -0.18 -2.94 5.76 24.59 0.14 -2.80 16 19 C -0.15 -2.42 10.05 21.22 0.21 -2.21 16 20 C -0.14 -2.10 10.18 21.22 0.22 -1.88 16 21 C -0.22 -3.31 11.23 66.72 0.75 -2.56 16 22 S 0.07 1.16 23.33 -56.49 -1.32 -0.16 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.42 7.68 8.47 -92.71 -0.79 6.89 16 31 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -74.16 346.75 2.59 -71.57 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.24 Total: 10.06 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.98 Total: -26.10 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.29 Total: -78.47 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.32 Total: -0.16 kcal Total: -74.16 2.59 -71.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.595 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds