Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.50697 * 109.47461 * 180.02562 * 3 2 1 5 5 C 1.37470 * 122.44730 * 265.02819 * 4 3 2 6 6 C 1.36643 * 113.29826 * 179.97438 * 5 4 3 7 7 C 1.46589 * 125.46085 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99523 * 351.39664 * 7 6 5 9 9 N 1.34776 * 119.99964 * 171.40382 * 7 6 5 10 10 C 1.46492 * 120.00225 * 0.13289 * 9 7 6 11 11 C 1.46506 * 119.99726 * 180.13297 * 9 7 6 12 12 C 1.50697 * 109.46880 * 89.99804 * 11 9 7 13 13 H 1.07998 * 120.00085 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99948 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00160 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47305 * 90.00018 * 16 14 12 18 18 H 1.48499 * 109.47479 * 210.00248 * 16 14 12 19 19 H 1.48504 * 109.47183 * 330.00318 * 16 14 12 20 20 S 1.75829 * 109.08340 * 359.97438 * 6 5 4 21 21 C 1.33818 * 122.45108 * 84.72570 * 4 3 2 22 22 C 1.50703 * 124.52277 * 0.03273 * 21 4 3 23 23 H 1.08999 * 109.46984 * 299.99330 * 1 2 3 24 24 H 1.08998 * 109.47243 * 60.00020 * 1 2 3 25 25 H 1.09008 * 109.46713 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47340 * 240.00264 * 2 1 3 27 27 H 1.08998 * 109.47243 * 119.99980 * 2 1 3 28 28 H 1.08998 * 109.46875 * 59.99979 * 3 2 1 29 29 H 1.09007 * 109.47079 * 300.00222 * 3 2 1 30 30 H 1.08005 * 123.35608 * 0.02562 * 5 4 3 31 31 H 1.09004 * 109.47407 * 83.46402 * 10 9 7 32 32 H 1.09006 * 109.47278 * 203.46337 * 10 9 7 33 33 H 1.08997 * 109.47228 * 323.46470 * 10 9 7 34 34 H 1.08999 * 109.47134 * 210.00072 * 11 9 7 35 35 H 1.09001 * 109.46944 * 330.00092 * 11 9 7 36 36 H 0.96994 * 119.99809 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47015 * 89.99080 * 22 21 4 38 38 H 1.08994 * 109.46677 * 209.99393 * 22 21 4 39 39 H 1.09000 * 109.46743 * 329.99450 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 -0.0006 5 6 4.2850 1.5431 1.1548 6 6 5.6340 1.5239 0.9378 7 6 6.6638 1.6146 1.9770 8 8 6.3497 1.8734 3.1240 9 7 7.9585 1.4117 1.6622 10 6 8.3369 1.1033 0.2810 11 6 8.9875 1.4996 2.7014 12 6 9.1880 0.1427 3.3257 13 1 8.6068 -0.7006 2.9830 14 6 10.1134 -0.0221 4.3344 15 7 10.8207 1.0050 4.7521 16 14 10.3624 -1.7041 5.1078 17 1 11.4135 -2.4414 4.3614 18 1 10.7822 -1.5411 6.5228 19 1 9.0896 -2.4671 5.0539 20 16 5.9366 1.3728 -0.7876 21 6 4.2645 1.3391 -1.1254 22 6 3.6745 1.2125 -2.5063 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.8427 1.6279 2.1365 31 1 8.4278 2.0296 -0.2863 32 1 9.2920 0.5781 0.2745 33 1 7.5725 0.4728 -0.1730 34 1 9.9240 1.8374 2.2578 35 1 8.6713 2.2085 3.4667 36 1 11.4720 0.8889 5.4614 37 1 3.5324 2.2053 -2.9332 38 1 4.3510 0.6382 -3.1391 39 1 2.7132 0.7023 -2.4452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078350076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -20.736627 kcal Electronic energy + Delta-G solvation = -19574.316043 eV Core-core repulsion = 16608.095313 eV Total energy + Delta-G solvation = -2966.220730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.25305 -38.31647 -34.91841 -34.20312 -32.71270 -31.81976 -28.78689 -27.96761 -26.19843 -25.44352 -23.63601 -22.41406 -21.44911 -19.32243 -18.05491 -17.45595 -16.54165 -15.96268 -15.31475 -14.86425 -14.79219 -14.61476 -14.13927 -13.96976 -13.46428 -13.18912 -12.86029 -12.71981 -12.55443 -12.43715 -12.25637 -12.02321 -11.78445 -11.71811 -11.35972 -11.23973 -11.19122 -10.90280 -10.77880 -10.62834 -10.23519 -10.06383 -9.66536 -9.13354 -8.45205 -8.41681 -8.16659 -7.67522 -6.05608 -4.10638 0.81028 1.72511 2.15310 2.59789 3.30123 3.36868 3.41628 3.78363 3.95771 4.44361 4.78046 4.80895 4.91967 5.02122 5.10372 5.16923 5.29244 5.37290 5.41116 5.47226 5.52665 5.60685 5.69702 5.72531 5.74647 5.82374 5.89665 5.99910 6.08741 6.15905 6.20494 6.49154 6.63871 7.01751 7.39657 7.47031 7.90450 8.20223 8.30304 8.85986 9.01273 9.54462 11.02511 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004142 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.600911 B = 6758.353048 C = 7284.933863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.058 4.058 4 C -0.118 4.118 5 C -0.062 4.062 6 C -0.246 4.246 7 C 0.574 3.426 8 O -0.529 6.529 9 N -0.595 5.595 10 C 0.070 3.930 11 C 0.246 3.754 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 S 0.215 5.785 21 C -0.240 4.240 22 C -0.080 4.080 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 0.148 -16.177 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.097 4.097 4 C -0.130 4.130 5 C -0.095 4.095 6 C -0.366 4.366 7 C 0.360 3.640 8 O -0.408 6.408 9 N -0.326 5.326 10 C -0.076 4.076 11 C 0.128 3.872 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.199 1.199 20 S 0.485 5.515 21 C -0.358 4.358 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.529 0.273 -16.344 21.218 hybrid contribution -1.062 -0.907 1.289 1.901 sum -14.591 -0.633 -15.054 20.975 Atomic orbital electron populations 1.21787 0.95877 1.01548 1.01712 1.21516 0.95332 0.96460 1.02475 1.20302 0.89848 0.97090 1.02498 1.18537 0.96866 1.06078 0.91531 1.20527 0.91184 0.98245 0.99528 1.24872 0.98411 1.16558 0.96799 1.16958 0.81754 0.78501 0.86739 1.90798 1.80893 1.49336 1.19775 1.48048 1.07093 1.67707 1.09767 1.21858 1.01935 1.00377 0.83463 1.19370 0.84379 0.98109 0.85369 1.21432 1.21126 0.94843 1.19327 0.92361 1.24933 0.95615 0.97180 0.96319 1.69932 1.24469 1.29935 1.28987 0.86477 0.78387 0.83898 0.78566 1.20594 1.21029 1.19859 1.83554 1.00378 1.67909 0.99664 1.24604 1.02062 1.09420 0.99742 1.20307 1.00777 1.02233 0.90525 0.92664 0.92892 0.92813 0.92007 0.91694 0.91100 0.91327 0.83498 0.92721 0.88858 0.91903 0.94620 0.93506 0.92654 0.91052 0.91556 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.14 5.85 -26.73 -0.16 -1.29 16 3 C -0.06 -0.60 4.82 -27.88 -0.13 -0.73 16 4 C -0.12 -1.54 5.04 -106.46 -0.54 -2.08 16 5 C -0.06 -1.00 9.79 -40.44 -0.40 -1.40 16 6 C -0.25 -4.40 6.23 -36.79 -0.23 -4.63 16 7 C 0.57 13.01 7.64 -12.89 -0.10 12.91 16 8 O -0.53 -14.13 16.43 5.18 0.09 -14.04 16 9 N -0.59 -13.22 2.86 -184.54 -0.53 -13.74 16 10 C 0.07 1.16 8.92 59.84 0.53 1.69 16 11 C 0.25 6.54 5.13 -5.19 -0.03 6.52 16 12 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 S 0.21 2.87 17.84 -107.50 -1.92 0.95 16 21 C -0.24 -2.91 6.28 -35.86 -0.23 -3.14 16 22 C -0.08 -0.70 9.71 36.01 0.35 -0.35 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.57 7.21 -51.93 -0.37 0.20 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.72 8.10 -51.93 -0.42 0.29 16 29 H 0.07 0.62 7.47 -51.92 -0.39 0.23 16 30 H 0.15 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 32 H 0.09 1.52 8.02 -51.93 -0.42 1.10 16 33 H 0.06 0.95 4.61 -23.22 -0.11 0.84 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.39 7.42 -51.93 -0.39 1.01 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -33.04 333.51 -8.34 -41.38 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.75 Total: -3.52 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.97 Total: -7.12 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.65 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.92 Total: 0.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.04 -8.34 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078350076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.647 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds