Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.50697 * 109.47461 * 180.02562 * 3 2 1 5 5 C 1.37470 * 122.44730 * 265.02819 * 4 3 2 6 6 C 1.36643 * 113.29826 * 179.97438 * 5 4 3 7 7 C 1.46589 * 125.46085 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99523 * 351.39664 * 7 6 5 9 9 N 1.34776 * 119.99964 * 171.40382 * 7 6 5 10 10 C 1.46492 * 120.00225 * 0.13289 * 9 7 6 11 11 C 1.46506 * 119.99726 * 180.13297 * 9 7 6 12 12 C 1.50697 * 109.46880 * 89.99804 * 11 9 7 13 13 H 1.07998 * 120.00085 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99948 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00160 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47305 * 90.00018 * 16 14 12 18 18 H 1.48499 * 109.47479 * 210.00248 * 16 14 12 19 19 H 1.48504 * 109.47183 * 330.00318 * 16 14 12 20 20 S 1.75829 * 109.08340 * 359.97438 * 6 5 4 21 21 C 1.33818 * 122.45108 * 84.72570 * 4 3 2 22 22 C 1.50703 * 124.52277 * 0.03273 * 21 4 3 23 23 H 1.08999 * 109.46984 * 299.99330 * 1 2 3 24 24 H 1.08998 * 109.47243 * 60.00020 * 1 2 3 25 25 H 1.09008 * 109.46713 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47340 * 240.00264 * 2 1 3 27 27 H 1.08998 * 109.47243 * 119.99980 * 2 1 3 28 28 H 1.08998 * 109.46875 * 59.99979 * 3 2 1 29 29 H 1.09007 * 109.47079 * 300.00222 * 3 2 1 30 30 H 1.08005 * 123.35608 * 0.02562 * 5 4 3 31 31 H 1.09004 * 109.47407 * 83.46402 * 10 9 7 32 32 H 1.09006 * 109.47278 * 203.46337 * 10 9 7 33 33 H 1.08997 * 109.47228 * 323.46470 * 10 9 7 34 34 H 1.08999 * 109.47134 * 210.00072 * 11 9 7 35 35 H 1.09001 * 109.46944 * 330.00092 * 11 9 7 36 36 H 0.96994 * 119.99809 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47015 * 89.99080 * 22 21 4 38 38 H 1.08994 * 109.46677 * 209.99393 * 22 21 4 39 39 H 1.09000 * 109.46743 * 329.99450 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 -0.0006 5 6 4.2850 1.5431 1.1548 6 6 5.6340 1.5239 0.9378 7 6 6.6638 1.6146 1.9770 8 8 6.3497 1.8734 3.1240 9 7 7.9585 1.4117 1.6622 10 6 8.3369 1.1033 0.2810 11 6 8.9875 1.4996 2.7014 12 6 9.1880 0.1427 3.3257 13 1 8.6068 -0.7006 2.9830 14 6 10.1134 -0.0221 4.3344 15 7 10.8207 1.0050 4.7521 16 14 10.3624 -1.7041 5.1078 17 1 11.4135 -2.4414 4.3614 18 1 10.7822 -1.5411 6.5228 19 1 9.0896 -2.4671 5.0539 20 16 5.9366 1.3728 -0.7876 21 6 4.2645 1.3391 -1.1254 22 6 3.6745 1.2125 -2.5063 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.8427 1.6279 2.1365 31 1 8.4278 2.0296 -0.2863 32 1 9.2920 0.5781 0.2745 33 1 7.5725 0.4728 -0.1730 34 1 9.9240 1.8374 2.2578 35 1 8.6713 2.2085 3.4667 36 1 11.4720 0.8889 5.4614 37 1 3.5324 2.2053 -2.9332 38 1 4.3510 0.6382 -3.1391 39 1 2.7132 0.7023 -2.4452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078350076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -40.646288 kcal Electronic energy + Delta-G solvation = -19575.179391 eV Core-core repulsion = 16608.095313 eV Total energy + Delta-G solvation = -2967.084077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81679 -39.55645 -36.73491 -35.11463 -34.78794 -32.88146 -30.31919 -29.24609 -27.67064 -26.78351 -25.16125 -23.74002 -22.48382 -20.68712 -19.28054 -18.89990 -18.72089 -17.35361 -16.89340 -16.43513 -16.36430 -15.66750 -15.41862 -15.05003 -14.48500 -14.42097 -14.34070 -14.03752 -13.82328 -13.73090 -13.57391 -13.24565 -13.01780 -12.92030 -12.73588 -12.66950 -12.55642 -12.31919 -12.20046 -11.97628 -11.75862 -11.51622 -11.21625 -10.91961 -10.66667 -9.80082 -9.35692 -9.20708 -8.25727 -6.41075 -0.42230 0.53901 1.03582 1.34954 1.38479 1.40528 1.49259 2.12280 2.31422 2.39534 3.03840 3.62990 3.89794 4.03868 4.13357 4.14931 4.29760 4.35252 4.45306 4.58453 4.67350 4.72415 4.78726 4.80525 4.87778 4.91294 5.03390 5.06604 5.13600 5.15926 5.23806 5.26088 5.46016 5.46943 5.52468 5.61722 5.74541 6.00327 6.55445 6.66949 7.17889 7.33369 8.81703 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004142 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.600911 B = 6758.353048 C = 7284.933863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.133 4.133 5 C -0.057 4.057 6 C -0.302 4.302 7 C 0.566 3.434 8 O -0.592 6.592 9 N -0.603 5.603 10 C 0.064 3.936 11 C 0.261 3.739 12 C -0.548 4.548 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.970 3.030 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.276 1.276 20 S 0.270 5.730 21 C -0.217 4.217 22 C -0.084 4.084 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.000 1.000 36 H 0.269 0.731 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.119 -1.132 -19.443 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.091 4.091 6 C -0.422 4.422 7 C 0.356 3.644 8 O -0.476 6.476 9 N -0.333 5.333 10 C -0.080 4.080 11 C 0.140 3.860 12 C -0.586 4.586 13 H 0.069 0.931 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.794 3.206 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.201 1.201 20 S 0.540 5.460 21 C -0.336 4.336 22 C -0.142 4.142 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.785 -1.013 -19.670 24.628 hybrid contribution -0.749 -0.460 2.189 2.359 sum -15.534 -1.472 -17.481 23.432 Atomic orbital electron populations 1.21762 0.94435 1.02084 1.02338 1.21494 0.96566 0.95703 1.01823 1.20353 0.87723 0.97837 1.03455 1.18680 0.98412 1.06811 0.90518 1.20684 0.91106 0.97048 1.00267 1.24432 0.97532 1.21302 0.98916 1.17631 0.82497 0.77122 0.87189 1.90733 1.81952 1.52169 1.22714 1.48023 1.06417 1.67706 1.11130 1.22158 1.02758 1.02357 0.80705 1.18868 0.85191 0.96277 0.85669 1.21665 1.21401 0.95319 1.20251 0.93067 1.25858 0.95095 1.01389 0.96588 1.70045 1.24912 1.32141 1.29458 0.85384 0.78527 0.78855 0.77851 1.18417 1.20393 1.20088 1.83069 1.01143 1.66749 0.94994 1.25148 1.01301 1.05758 1.01349 1.20533 1.01693 1.03950 0.88047 0.92912 0.91413 0.92365 0.91289 0.93750 0.91503 0.89038 0.85193 0.89766 0.88547 0.89945 0.94775 0.98142 0.92213 0.89045 0.89853 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.98 5.85 30.60 0.18 -1.80 16 3 C -0.05 -0.99 4.82 29.85 0.14 -0.85 16 4 C -0.13 -3.25 5.04 -21.05 -0.11 -3.35 16 5 C -0.06 -1.87 9.79 21.72 0.21 -1.65 16 6 C -0.30 -11.00 6.23 24.08 0.15 -10.85 16 7 C 0.57 27.13 7.64 86.42 0.66 27.79 16 8 O -0.59 -34.27 16.43 -4.37 -0.07 -34.34 16 9 N -0.60 -27.88 2.86 -855.99 -2.45 -30.32 16 10 C 0.06 2.09 8.92 127.77 1.14 3.23 16 11 C 0.26 14.63 5.13 85.63 0.44 15.07 16 12 C -0.55 -32.60 9.39 25.60 0.24 -32.36 16 13 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 14 C 0.01 0.59 5.46 84.65 0.46 1.05 16 15 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 16 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 S 0.27 6.55 17.84 -56.49 -1.01 5.54 16 21 C -0.22 -4.52 6.28 24.68 0.15 -4.36 16 22 C -0.08 -1.03 9.71 71.24 0.69 -0.34 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.07 1.05 7.21 -2.39 -0.02 1.04 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 29 H 0.09 1.27 7.47 -2.38 -0.02 1.25 16 30 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.08 2.23 7.77 -2.39 -0.02 2.22 16 32 H 0.10 3.07 8.02 -2.38 -0.02 3.05 16 33 H 0.08 2.35 4.61 -20.64 -0.10 2.25 16 34 H 0.03 1.89 8.07 -2.39 -0.02 1.87 16 35 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.90 6.37 -2.39 -0.02 0.88 16 Total: -1.00 -76.66 333.51 4.81 -71.84 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 0.95 Total: 5.62 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 5.08 Total: -9.65 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.16 Total: -86.69 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.07 Total: -34.34 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.01 Total: 5.54 kcal Total: -76.66 4.81 -71.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078350076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.194 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds