Wall clock time and date at job start Tue Mar 31 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48500 * 109.46820 * 269.99572 * 3 2 1 5 5 H 1.48499 * 109.47387 * 29.99657 * 3 2 1 6 6 H 1.48497 * 109.47195 * 150.00054 * 3 2 1 7 7 C 1.37883 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99710 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99784 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46943 * 174.92863 * 9 7 2 11 11 C 1.46899 * 110.99826 * 298.94018 * 10 9 7 12 12 C 1.50698 * 109.47363 * 170.00166 * 11 10 9 13 13 C 1.33398 * 125.20106 * 89.71777 * 12 11 10 14 14 C 1.38423 * 114.91671 * 179.85871 * 13 12 11 15 15 C 1.33391 * 114.92363 * 0.43542 * 14 13 12 16 16 S 1.75880 * 125.20460 * 270.02472 * 12 11 10 17 17 C 1.46904 * 110.99819 * 174.99182 * 10 9 7 18 18 C 1.52997 * 109.46866 * 287.29950 * 17 10 9 19 19 H 1.09004 * 110.55521 * 309.57151 * 18 17 10 20 20 C 1.55000 * 110.61942 * 186.69861 * 18 17 10 21 21 C 1.54811 * 102.09286 * 204.47920 * 20 18 17 22 22 C 1.54098 * 104.18995 * 20.87594 * 21 20 18 23 23 O 1.43749 * 107.42083 * 1.95401 * 22 21 20 24 24 H 0.96995 * 119.99804 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47388 * 54.92060 * 9 7 2 26 26 H 1.09008 * 109.47114 * 294.92193 * 9 7 2 27 27 H 1.09011 * 109.46960 * 290.00137 * 11 10 9 28 28 H 1.08997 * 109.47401 * 49.99882 * 11 10 9 29 29 H 1.07994 * 122.53538 * 0.02562 * 13 12 11 30 30 H 1.08001 * 122.53734 * 180.20116 * 14 13 12 31 31 H 1.07995 * 125.20187 * 179.79202 * 15 14 13 32 32 H 1.09007 * 109.47001 * 167.30377 * 17 10 9 33 33 H 1.08995 * 109.47321 * 47.29996 * 17 10 9 34 34 H 1.08991 * 110.90789 * 86.27579 * 20 18 17 35 35 H 1.09004 * 110.93277 * 322.68801 * 20 18 17 36 36 H 1.09011 * 110.48438 * 262.20309 * 21 20 18 37 37 H 1.08993 * 110.60277 * 139.61205 * 21 20 18 38 38 H 1.08994 * 109.88120 * 121.45894 * 22 21 20 39 39 H 1.09004 * 109.88175 * 242.46387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5736 0.1240 11 6 3.5503 -3.1820 1.3829 12 6 3.8570 -4.6573 1.3660 13 6 4.9910 -5.2120 1.7972 14 6 5.0453 -6.5906 1.6851 15 6 3.9592 -7.1547 1.1545 16 16 2.7776 -5.9105 0.7678 17 6 5.4647 -2.6250 0.0090 18 6 5.8708 -2.3786 -1.4454 19 1 5.3081 -3.0288 -2.1153 20 6 7.3948 -2.5924 -1.6303 21 6 7.6955 -1.7235 -2.8757 22 6 6.5202 -0.7286 -2.9348 23 8 5.6770 -0.9906 -1.8005 24 1 -0.4849 0.8400 -0.0004 25 1 3.8745 -0.6033 0.8421 26 1 3.8752 -0.7612 -0.9309 27 1 4.0686 -2.7127 2.2192 28 1 2.4759 -3.0354 1.4931 29 1 5.8038 -4.6298 2.2054 30 1 5.9036 -7.1656 1.9997 31 1 3.8256 -8.2133 0.9882 32 1 5.8197 -3.6063 0.3241 33 1 5.9063 -1.8575 0.6445 34 1 7.6198 -3.6411 -1.8241 35 1 7.9468 -2.2321 -0.7621 36 1 7.7191 -2.3400 -3.7744 37 1 8.6393 -1.1922 -2.7538 38 1 6.8968 0.2932 -2.8886 39 1 5.9571 -0.8745 -3.8567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078434668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:04 Heat of formation + Delta-G solvation = -3.917037 kcal Electronic energy + Delta-G solvation = -20314.378177 eV Core-core repulsion = 17348.886799 eV Total energy + Delta-G solvation = -2965.491378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.27308 -37.90805 -36.11145 -32.50592 -31.91440 -30.80892 -29.73057 -27.24475 -25.87109 -23.84066 -22.50385 -21.46435 -21.03715 -19.94879 -18.89239 -17.04076 -16.61828 -16.23793 -15.66681 -15.21252 -14.97086 -14.60822 -14.16694 -13.75939 -13.30902 -13.21344 -12.67218 -12.52251 -12.37071 -12.15160 -12.02337 -11.81569 -11.60608 -11.38297 -11.01828 -10.94140 -10.66122 -10.56760 -10.43979 -10.27819 -10.24342 -9.74226 -9.29147 -9.16323 -8.49860 -8.34050 -8.14580 -7.38178 -5.98816 -3.95158 1.31023 1.99066 2.40034 2.98471 3.37188 3.43090 3.49252 4.17301 4.50547 4.61831 4.71165 4.96218 5.13247 5.20616 5.26148 5.35952 5.45126 5.49052 5.65436 5.69541 5.72268 5.78460 5.80484 5.91070 5.92829 6.02944 6.12092 6.14278 6.31954 6.39638 6.51123 6.55078 6.79488 7.03704 7.18670 7.26699 7.77939 7.93202 8.07985 8.71158 9.07960 9.64031 11.14030 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.007547 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.718407 B = 3709.306445 C = 5724.250452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.079 0.921 9 C 0.156 3.844 10 N -0.519 5.519 11 C 0.121 3.879 12 C -0.138 4.138 13 C -0.163 4.163 14 C -0.132 4.132 15 C -0.239 4.239 16 S 0.129 5.871 17 C 0.052 3.948 18 C 0.087 3.913 19 H 0.077 0.923 20 C -0.149 4.149 21 C -0.153 4.153 22 C 0.041 3.959 23 O -0.360 6.360 24 H 0.262 0.738 25 H -0.013 1.013 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.640 -9.861 -0.548 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.243 5.243 11 C -0.008 4.008 12 C -0.256 4.256 13 C -0.194 4.194 14 C -0.164 4.164 15 C -0.375 4.375 16 S 0.392 5.608 17 C -0.076 4.076 18 C 0.029 3.971 19 H 0.095 0.905 20 C -0.188 4.188 21 C -0.191 4.191 22 C -0.036 4.036 23 O -0.279 6.279 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.674 -9.859 -1.463 16.124 hybrid contribution 2.368 1.229 1.043 2.865 sum 15.042 -8.629 -0.420 17.347 Atomic orbital electron populations 1.69902 1.06116 1.26736 1.51403 1.24860 0.94668 0.98816 0.94816 0.86860 0.80292 0.83928 0.78726 1.20127 1.21560 1.19075 1.21086 0.89018 0.94550 1.50276 0.90298 1.20444 0.96469 0.83118 0.96967 1.61968 1.07222 1.22565 1.32569 1.20582 1.03388 0.85404 0.91397 1.24772 0.97331 1.00104 1.03433 1.20063 0.98542 0.94516 1.06238 1.20029 0.99089 0.94446 1.02793 1.25611 0.99314 1.02965 1.09639 1.84545 1.19264 0.96015 1.60960 1.22233 0.90702 1.00665 0.94034 1.23183 0.93093 0.83796 0.97024 0.90498 1.23133 0.97167 1.00326 0.98141 1.22902 0.99319 0.98204 0.98699 1.23106 0.90803 0.98988 0.90704 1.89124 1.64128 1.27064 1.47559 0.92794 0.99548 0.92439 0.94061 0.87596 0.85025 0.85163 0.82616 0.89913 0.94899 0.90455 0.90807 0.91001 0.90988 0.90565 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 22.32 27.57 -169.99 -4.69 17.63 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.65 6.40 56.52 0.36 -6.29 16 7 C -0.51 -14.64 8.77 -34.44 -0.30 -14.94 16 8 H 0.08 2.43 7.28 -52.49 -0.38 2.05 16 9 C 0.16 3.87 3.55 -4.98 -0.02 3.85 16 10 N -0.52 -10.91 4.48 -237.51 -1.06 -11.98 16 11 C 0.12 2.36 5.29 -4.98 -0.03 2.33 16 12 C -0.14 -2.28 5.50 -36.00 -0.20 -2.48 16 13 C -0.16 -2.30 8.38 -41.21 -0.35 -2.65 16 14 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 15 C -0.24 -3.05 11.23 29.04 0.33 -2.72 16 16 S 0.13 1.99 23.33 -107.50 -2.51 -0.51 16 17 C 0.05 0.91 4.69 -3.82 -0.02 0.89 16 18 C 0.09 1.42 3.44 -25.68 -0.09 1.33 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 20 C -0.15 -1.82 6.59 -24.72 -0.16 -1.99 16 21 C -0.15 -1.71 7.01 -25.20 -0.18 -1.89 16 22 C 0.04 0.58 7.69 37.73 0.29 0.87 16 23 O -0.36 -6.74 8.60 -35.23 -0.30 -7.04 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H -0.01 -0.34 6.84 -51.93 -0.36 -0.69 16 26 H 0.06 1.49 5.09 -51.92 -0.26 1.23 16 27 H 0.04 0.77 8.12 -51.92 -0.42 0.35 16 28 H 0.11 2.34 6.38 -51.93 -0.33 2.01 16 29 H 0.13 1.67 7.80 -52.49 -0.41 1.26 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.08 1.27 5.36 -51.92 -0.28 0.99 16 33 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 36 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -31.58 322.59 -10.00 -41.57 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.84 Total: 0.13 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.24 Total: -17.51 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.29 Total: -39.13 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.30 Total: -7.04 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.69 Total: 17.63 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.51 Total: -0.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.58 -10.00 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078434668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.657 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds