Wall clock time and date at job start Tue Mar 31 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48500 * 109.46820 * 269.99572 * 3 2 1 5 5 H 1.48499 * 109.47387 * 29.99657 * 3 2 1 6 6 H 1.48497 * 109.47195 * 150.00054 * 3 2 1 7 7 C 1.37883 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99710 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99784 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46943 * 174.92863 * 9 7 2 11 11 C 1.46899 * 110.99826 * 298.94018 * 10 9 7 12 12 C 1.50698 * 109.47363 * 170.00166 * 11 10 9 13 13 C 1.33398 * 125.20106 * 89.71777 * 12 11 10 14 14 C 1.38423 * 114.91671 * 179.85871 * 13 12 11 15 15 C 1.33391 * 114.92363 * 0.43542 * 14 13 12 16 16 S 1.75880 * 125.20460 * 270.02472 * 12 11 10 17 17 C 1.46904 * 110.99819 * 174.99182 * 10 9 7 18 18 C 1.52997 * 109.46866 * 287.29950 * 17 10 9 19 19 H 1.09004 * 110.55521 * 309.57151 * 18 17 10 20 20 C 1.55000 * 110.61942 * 186.69861 * 18 17 10 21 21 C 1.54811 * 102.09286 * 204.47920 * 20 18 17 22 22 C 1.54098 * 104.18995 * 20.87594 * 21 20 18 23 23 O 1.43749 * 107.42083 * 1.95401 * 22 21 20 24 24 H 0.96995 * 119.99804 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47388 * 54.92060 * 9 7 2 26 26 H 1.09008 * 109.47114 * 294.92193 * 9 7 2 27 27 H 1.09011 * 109.46960 * 290.00137 * 11 10 9 28 28 H 1.08997 * 109.47401 * 49.99882 * 11 10 9 29 29 H 1.07994 * 122.53538 * 0.02562 * 13 12 11 30 30 H 1.08001 * 122.53734 * 180.20116 * 14 13 12 31 31 H 1.07995 * 125.20187 * 179.79202 * 15 14 13 32 32 H 1.09007 * 109.47001 * 167.30377 * 17 10 9 33 33 H 1.08995 * 109.47321 * 47.29996 * 17 10 9 34 34 H 1.08991 * 110.90789 * 86.27579 * 20 18 17 35 35 H 1.09004 * 110.93277 * 322.68801 * 20 18 17 36 36 H 1.09011 * 110.48438 * 262.20309 * 21 20 18 37 37 H 1.08993 * 110.60277 * 139.61205 * 21 20 18 38 38 H 1.08994 * 109.88120 * 121.45894 * 22 21 20 39 39 H 1.09004 * 109.88175 * 242.46387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5736 0.1240 11 6 3.5503 -3.1820 1.3829 12 6 3.8570 -4.6573 1.3660 13 6 4.9910 -5.2120 1.7972 14 6 5.0453 -6.5906 1.6851 15 6 3.9592 -7.1547 1.1545 16 16 2.7776 -5.9105 0.7678 17 6 5.4647 -2.6250 0.0090 18 6 5.8708 -2.3786 -1.4454 19 1 5.3081 -3.0288 -2.1153 20 6 7.3948 -2.5924 -1.6303 21 6 7.6955 -1.7235 -2.8757 22 6 6.5202 -0.7286 -2.9348 23 8 5.6770 -0.9906 -1.8005 24 1 -0.4849 0.8400 -0.0004 25 1 3.8745 -0.6033 0.8421 26 1 3.8752 -0.7612 -0.9309 27 1 4.0686 -2.7127 2.2192 28 1 2.4759 -3.0354 1.4931 29 1 5.8038 -4.6298 2.2054 30 1 5.9036 -7.1656 1.9997 31 1 3.8256 -8.2133 0.9882 32 1 5.8197 -3.6063 0.3241 33 1 5.9063 -1.8575 0.6445 34 1 7.6198 -3.6411 -1.8241 35 1 7.9468 -2.2321 -0.7621 36 1 7.7191 -2.3400 -3.7744 37 1 8.6393 -1.1922 -2.7538 38 1 6.8968 0.2932 -2.8886 39 1 5.9571 -0.8745 -3.8567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078434668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:04 Heat of formation + Delta-G solvation = -24.657869 kcal Electronic energy + Delta-G solvation = -20315.277567 eV Core-core repulsion = 17348.886799 eV Total energy + Delta-G solvation = -2966.390768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51782 -39.14909 -37.55957 -34.68933 -33.05269 -32.05174 -31.30131 -28.95734 -27.11192 -25.34029 -23.91285 -22.82453 -22.11878 -21.56620 -19.99097 -19.03692 -18.07371 -17.41546 -16.98971 -16.60393 -16.23889 -16.07746 -15.66523 -15.57677 -14.67174 -14.51570 -14.33989 -13.97223 -13.55497 -13.45996 -13.38489 -13.20769 -12.99231 -12.64730 -12.52298 -12.37553 -12.16625 -11.99130 -11.90705 -11.80284 -11.51120 -11.45879 -11.25073 -10.77351 -10.52181 -9.55151 -9.34126 -9.04363 -8.28627 -6.29750 0.17519 0.82344 1.28809 1.32035 1.33555 1.45304 1.91439 2.33832 3.00401 3.08610 3.21437 3.70907 3.86948 4.03501 4.07592 4.25211 4.27774 4.30819 4.34573 4.53406 4.63182 4.68528 4.71601 4.77307 4.85089 4.91963 4.94615 4.96168 5.03550 5.13277 5.23400 5.27176 5.32527 5.45237 5.64702 5.70199 5.98153 6.09256 6.35123 6.64340 6.75421 7.33277 8.87791 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.007547 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.718407 B = 3709.306445 C = 5724.250452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.514 4.514 8 H 0.039 0.961 9 C 0.173 3.827 10 N -0.533 5.533 11 C 0.130 3.870 12 C -0.170 4.170 13 C -0.140 4.140 14 C -0.133 4.133 15 C -0.214 4.214 16 S 0.068 5.932 17 C 0.056 3.944 18 C 0.079 3.921 19 H 0.060 0.940 20 C -0.138 4.138 21 C -0.143 4.143 22 C 0.029 3.971 23 O -0.401 6.401 24 H 0.266 0.734 25 H -0.022 1.022 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.188 0.812 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.513 -10.969 -0.451 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.552 4.552 8 H 0.057 0.943 9 C 0.046 3.954 10 N -0.257 5.257 11 C 0.001 3.999 12 C -0.288 4.288 13 C -0.172 4.172 14 C -0.163 4.163 15 C -0.350 4.350 16 S 0.331 5.669 17 C -0.071 4.071 18 C 0.022 3.978 19 H 0.078 0.922 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.047 4.047 23 O -0.322 6.322 24 H 0.075 0.925 25 H -0.005 1.005 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.169 0.831 30 H 0.187 0.813 31 H 0.205 0.795 32 H 0.125 0.875 33 H 0.048 0.952 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.567 -10.986 -1.367 19.925 hybrid contribution 1.146 1.427 1.018 2.094 sum 17.712 -9.559 -0.349 20.130 Atomic orbital electron populations 1.70044 1.07869 1.27912 1.52932 1.25725 0.95501 1.02713 0.94535 0.85778 0.79187 0.79234 0.79105 1.19421 1.20539 1.18097 1.21310 0.91251 0.93123 1.49516 0.94306 1.20083 0.93652 0.85556 0.96119 1.61870 1.10003 1.20022 1.33774 1.20299 1.00743 0.87933 0.90886 1.24390 0.99012 0.98296 1.07090 1.20381 0.97524 0.95663 1.03596 1.20378 1.00121 0.93689 1.02106 1.25960 0.97633 1.03420 1.07957 1.84774 1.21612 0.98127 1.62393 1.22327 0.87898 1.01790 0.95120 1.23263 0.96112 0.82856 0.95617 0.92228 1.23092 0.93461 1.02011 0.99009 1.22885 0.98750 0.97529 0.98927 1.23352 0.91559 1.00595 0.89236 1.89051 1.65781 1.28166 1.49176 0.92510 1.00464 0.93044 0.93661 0.91876 0.83092 0.81269 0.79450 0.87544 0.95216 0.88193 0.89953 0.89371 0.88776 0.89656 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.01 0.76 5.47 84.66 0.46 1.23 16 3 Si 0.94 47.15 27.57 68.60 1.89 49.04 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.26 -12.36 6.40 99.48 0.64 -11.72 16 7 C -0.51 -31.08 8.77 25.60 0.22 -30.85 16 8 H 0.04 2.60 7.28 -2.91 -0.02 2.57 16 9 C 0.17 8.88 3.55 85.56 0.30 9.18 16 10 N -0.53 -23.07 4.48 -905.36 -4.05 -27.12 16 11 C 0.13 5.30 5.29 85.56 0.45 5.75 16 12 C -0.17 -5.62 5.50 24.59 0.14 -5.49 16 13 C -0.14 -3.58 8.38 21.22 0.18 -3.40 16 14 C -0.13 -2.78 10.18 21.22 0.22 -2.56 16 15 C -0.21 -4.80 11.23 66.72 0.75 -4.05 16 16 S 0.07 2.14 23.33 -56.49 -1.32 0.82 16 17 C 0.06 1.91 4.69 86.30 0.41 2.32 16 18 C 0.08 2.50 3.44 31.28 0.11 2.61 16 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 20 C -0.14 -2.90 6.59 31.90 0.21 -2.69 16 21 C -0.14 -2.72 7.01 31.58 0.22 -2.50 16 22 C 0.03 0.78 7.69 72.35 0.56 1.33 16 23 O -0.40 -14.88 8.60 -148.98 -1.28 -16.16 16 24 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 25 H -0.02 -1.17 6.84 -2.39 -0.02 -1.18 16 26 H 0.05 2.73 5.09 -2.38 -0.01 2.72 16 27 H 0.05 1.74 8.12 -2.38 -0.02 1.72 16 28 H 0.06 3.05 6.38 -2.39 -0.02 3.04 16 29 H 0.15 3.26 7.80 -2.91 -0.02 3.24 16 30 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.11 3.03 5.36 -2.38 -0.01 3.02 16 33 H 0.03 1.03 8.04 -2.39 -0.02 1.01 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16 36 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -72.78 322.59 0.72 -72.07 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.96 Total: 11.21 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 4.22 Total: -29.12 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.76 Total: -87.86 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.28 Total: -16.16 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.89 Total: 49.04 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -72.78 0.72 -72.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078434668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.409 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds