Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00236 * 2 1 4 4 H 1.48495 * 109.47234 * 239.99905 * 3 2 1 5 5 H 1.48504 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47301 * 119.99521 * 3 2 1 7 7 C 1.37881 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99826 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99589 * 293.95602 * 10 9 7 12 12 C 1.50703 * 109.47242 * 163.80524 * 11 10 9 13 13 C 1.33392 * 125.20400 * 93.82434 * 12 11 10 14 14 C 1.38416 * 114.92296 * 179.75565 * 13 12 11 15 15 C 1.33393 * 114.92260 * 0.43223 * 14 13 12 16 16 S 1.75888 * 125.20352 * 273.80740 * 12 11 10 17 17 C 1.46897 * 110.99810 * 169.99999 * 10 9 7 18 18 C 1.52992 * 109.47169 * 287.97763 * 17 10 9 19 19 H 1.08996 * 109.87389 * 59.18238 * 18 17 10 20 20 C 1.54100 * 109.87820 * 180.19615 * 18 17 10 21 21 C 1.54810 * 104.18951 * 121.45240 * 20 18 17 22 22 C 1.54994 * 102.09118 * 20.88124 * 21 20 18 23 23 O 1.43749 * 109.87743 * 298.17853 * 18 17 10 24 24 H 0.97003 * 119.99861 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47236 * 59.99932 * 9 7 2 26 26 H 1.08994 * 109.47367 * 299.99544 * 9 7 2 27 27 H 1.09004 * 109.47810 * 43.80485 * 11 10 9 28 28 H 1.09003 * 109.47254 * 283.79982 * 11 10 9 29 29 H 1.08008 * 122.53666 * 359.97438 * 13 12 11 30 30 H 1.08002 * 122.54309 * 180.27298 * 14 13 12 31 31 H 1.07994 * 125.20835 * 179.86131 * 15 14 13 32 32 H 1.09000 * 109.47012 * 47.97975 * 17 10 9 33 33 H 1.09007 * 109.46694 * 167.97665 * 17 10 9 34 34 H 1.09001 * 110.48747 * 240.12597 * 20 18 17 35 35 H 1.08998 * 110.49246 * 2.64319 * 20 18 17 36 36 H 1.09005 * 110.90787 * 139.07692 * 21 20 18 37 37 H 1.08998 * 110.90811 * 262.68390 * 21 20 18 38 38 H 1.08996 * 110.61981 * 81.47781 * 22 21 20 39 39 H 1.09005 * 110.61889 * 204.31473 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 2.9709 -3.6540 -1.2528 12 6 4.1847 -4.5290 -1.0737 13 6 4.2486 -5.8266 -1.3759 14 6 5.4732 -6.4232 -1.1299 15 6 6.4011 -5.6122 -0.6193 16 16 5.7341 -3.9952 -0.4347 17 6 1.5211 -4.8935 0.2387 18 6 1.0750 -4.9685 1.7002 19 1 0.4040 -4.1397 1.9258 20 6 0.3597 -6.3081 1.9617 21 6 1.1916 -6.9690 3.0877 22 6 1.9244 -5.7518 3.7071 23 8 2.2224 -4.9174 2.5646 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.2864 -2.6446 -1.5169 28 1 2.3453 -4.0590 -2.0483 29 1 3.4095 -6.3698 -1.7851 30 1 5.6623 -7.4669 -1.3332 31 1 7.4091 -5.9028 -0.3630 32 1 0.6492 -4.9653 -0.4115 33 1 2.2030 -5.7165 0.0242 34 1 -0.6637 -6.1355 2.2946 35 1 0.3688 -6.9270 1.0645 36 1 0.5425 -7.4469 3.8215 37 1 1.9041 -7.6840 2.6764 38 1 1.2728 -5.2257 4.4046 39 1 2.8413 -6.0682 4.2045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078434674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -8.056925 kcal Electronic energy + Delta-G solvation = -20310.552269 eV Core-core repulsion = 17344.881373 eV Total energy + Delta-G solvation = -2965.670897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.14087 -37.74066 -36.04025 -32.58674 -31.79386 -30.72733 -29.39153 -26.83106 -25.70550 -23.75180 -22.58728 -21.94879 -20.81774 -19.85477 -18.78797 -16.85346 -16.40745 -15.90116 -15.55192 -15.12589 -14.93019 -14.57609 -14.00414 -13.70038 -13.35564 -13.27490 -12.51859 -12.36126 -12.27416 -11.96935 -11.74008 -11.71748 -11.44906 -11.21433 -10.99366 -10.83688 -10.74510 -10.66292 -10.39752 -10.30651 -10.21703 -9.84710 -9.26805 -9.03386 -8.42099 -8.23948 -8.02430 -7.19857 -6.01106 -4.01680 1.43038 2.10443 2.51108 3.10776 3.35918 3.39458 3.43544 4.26432 4.45978 4.79690 4.85333 5.07437 5.19411 5.29985 5.34358 5.36002 5.49823 5.58243 5.73892 5.84258 5.84890 5.85722 5.89434 5.93775 6.01082 6.12973 6.18678 6.25597 6.38332 6.53263 6.56947 6.65954 6.88066 7.25609 7.30686 7.44781 7.83195 8.09366 8.20533 8.56210 9.05267 9.62320 11.09732 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.007163 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.202327 B = 3907.958329 C = 5556.959443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.520 5.520 11 C 0.123 3.877 12 C -0.130 4.130 13 C -0.163 4.163 14 C -0.131 4.131 15 C -0.241 4.241 16 S 0.126 5.874 17 C 0.055 3.945 18 C 0.086 3.914 19 H 0.072 0.928 20 C -0.152 4.152 21 C -0.153 4.153 22 C 0.041 3.959 23 O -0.345 6.345 24 H 0.261 0.739 25 H -0.010 1.010 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -14.403 1.253 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.244 5.244 11 C -0.007 4.007 12 C -0.248 4.248 13 C -0.194 4.194 14 C -0.163 4.163 15 C -0.377 4.377 16 S 0.390 5.610 17 C -0.074 4.074 18 C 0.027 3.973 19 H 0.090 0.910 20 C -0.190 4.190 21 C -0.190 4.190 22 C -0.037 4.037 23 O -0.263 6.263 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.172 0.828 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.361 -12.676 2.121 14.340 hybrid contribution -0.983 -0.793 -1.001 1.612 sum 5.377 -13.469 1.120 14.546 Atomic orbital electron populations 1.69942 1.06033 1.26838 1.51085 1.24956 0.94830 0.99209 0.95427 0.86600 0.79507 0.82840 0.78753 1.20241 1.21391 1.20091 1.21108 0.93451 0.89902 1.49965 0.91935 1.19787 0.89996 0.87255 0.96114 1.62004 1.27805 1.02657 1.31921 1.20529 0.89742 0.98771 0.91612 1.24716 0.99081 0.97793 1.03242 1.20005 0.98585 0.94000 1.06798 1.19997 0.93187 1.00460 1.02618 1.25557 1.03749 0.97964 1.10389 1.84417 1.04649 1.09597 1.62362 1.22265 0.97053 0.94273 0.93797 1.22754 0.87567 0.95803 0.91152 0.91043 1.22998 0.99671 0.97149 0.99210 1.23093 0.99303 0.98620 0.98030 1.23519 0.99563 0.90146 0.90448 1.89145 1.37566 1.68210 1.31372 0.92916 0.99227 0.94680 0.88359 0.94288 0.85262 0.85335 0.82775 0.94805 0.91125 0.90950 0.90795 0.90883 0.90898 0.92785 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.17 8.28 -34.44 -0.29 -14.46 16 8 H 0.06 1.75 7.26 -52.49 -0.38 1.37 16 9 C 0.19 4.98 4.57 -4.97 -0.02 4.96 16 10 N -0.52 -11.33 4.31 -237.52 -1.02 -12.36 16 11 C 0.12 2.44 5.31 -4.98 -0.03 2.41 16 12 C -0.13 -2.28 5.56 -36.00 -0.20 -2.48 16 13 C -0.16 -2.50 8.72 -41.21 -0.36 -2.86 16 14 C -0.13 -1.80 10.18 -41.21 -0.42 -2.22 16 15 C -0.24 -3.34 11.23 29.04 0.33 -3.01 16 16 S 0.13 2.09 23.33 -107.50 -2.51 -0.42 16 17 C 0.05 1.01 4.28 -3.83 -0.02 1.00 16 18 C 0.09 1.52 3.42 -26.16 -0.09 1.43 16 19 H 0.07 1.43 6.60 -51.93 -0.34 1.08 16 20 C -0.15 -2.02 6.64 -25.20 -0.17 -2.19 16 21 C -0.15 -1.80 7.16 -24.72 -0.18 -1.98 16 22 C 0.04 0.57 7.72 38.21 0.29 0.87 16 23 O -0.34 -6.59 11.11 -35.23 -0.39 -6.98 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 26 H 0.04 0.97 6.41 -51.93 -0.33 0.64 16 27 H 0.10 2.13 6.59 -51.93 -0.34 1.79 16 28 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 29 H 0.13 1.78 7.95 -52.48 -0.42 1.37 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.07 1.23 6.04 -51.92 -0.31 0.91 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -30.68 329.31 -10.37 -41.04 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.88 Total: -0.17 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.24 Total: -17.02 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.29 Total: -38.20 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.39 Total: -6.98 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.51 Total: -0.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.68 -10.37 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078434674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.984 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds