Wall clock time and date at job start Tue Mar 31 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20415 * 2 1 4 4 C 1.38425 * 114.92174 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20296 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46797 * 90.00752 * 6 5 4 8 8 C 1.53001 * 109.46880 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47033 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99490 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00088 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00150 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00182 * 179.97438 * 11 9 8 14 14 C 1.50705 * 109.46980 * 89.99962 * 13 11 9 15 15 H 1.08002 * 119.99686 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00020 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99814 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00229 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47043 * 90.00176 * 18 16 14 20 20 H 1.48500 * 109.47032 * 210.00135 * 18 16 14 21 21 H 1.48497 * 109.46804 * 330.00073 * 18 16 14 22 22 S 1.75887 * 125.19945 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46776 * 89.99460 * 1 2 3 24 24 H 1.08999 * 109.46856 * 209.99477 * 1 2 3 25 25 H 1.09002 * 109.46917 * 329.99965 * 1 2 3 26 26 H 1.08001 * 122.54283 * 0.02562 * 3 2 1 27 27 H 1.07997 * 122.54292 * 179.73691 * 4 3 2 28 28 H 1.08998 * 109.47062 * 210.00206 * 6 5 4 29 29 H 1.08994 * 109.47215 * 330.00270 * 6 5 4 30 30 H 1.08998 * 109.46869 * 299.99573 * 7 6 5 31 31 H 1.09002 * 109.47526 * 60.00122 * 7 6 5 32 32 H 1.08998 * 109.47021 * 299.99480 * 8 7 6 33 33 H 1.08999 * 109.47637 * 59.99536 * 8 7 6 34 34 H 1.08999 * 109.47090 * 89.99951 * 12 11 9 35 35 H 1.08993 * 109.47631 * 210.00630 * 12 11 9 36 36 H 1.09007 * 109.46853 * 330.00531 * 12 11 9 37 37 H 1.08997 * 109.47008 * 209.99559 * 13 11 9 38 38 H 1.08999 * 109.47027 * 330.00013 * 13 11 9 39 39 H 0.97006 * 119.99715 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3861 -0.9771 -0.0016 7 6 5.8647 -1.1560 1.4406 8 6 7.2974 -1.6928 1.4396 9 6 7.7692 -1.8684 2.8601 10 8 7.0321 -1.5910 3.7824 11 7 9.0100 -2.3337 3.1055 12 6 9.9001 -2.6693 1.9913 13 6 9.4688 -2.5039 4.4863 14 6 9.1268 -3.8925 4.9617 15 1 8.6190 -4.5796 4.3011 16 6 9.4623 -4.2857 6.2399 17 7 10.0803 -3.4487 7.0444 18 14 9.0379 -6.0067 6.8294 19 1 10.1608 -6.9274 6.5185 20 1 8.8075 -5.9847 8.2963 21 1 7.8081 -6.4760 6.1421 22 16 2.5209 -1.4373 -0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8670 2.0895 0.0004 27 1 4.3721 1.6349 -0.0048 28 1 5.4132 -1.9382 -0.5152 29 1 6.0384 -0.2717 -0.5161 30 1 5.8376 -0.1950 1.9542 31 1 5.2124 -1.8616 1.9552 32 1 7.3250 -2.6538 0.9258 33 1 7.9496 -0.9870 0.9251 34 1 10.4819 -1.7904 1.7136 35 1 10.5742 -3.4707 2.2934 36 1 9.3063 -2.9965 1.1377 37 1 10.5483 -2.3602 4.5308 38 1 8.9778 -1.7699 5.1253 39 1 10.3166 -3.7255 7.9436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079530970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:03 Heat of formation + Delta-G solvation = -25.094793 kcal Electronic energy + Delta-G solvation = -18882.902267 eV Core-core repulsion = 15916.492553 eV Total energy + Delta-G solvation = -2966.409714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.03011 -38.18892 -35.13446 -34.56128 -32.62121 -31.84809 -29.13918 -27.57944 -25.85912 -24.99781 -23.32432 -22.54238 -21.25297 -18.95581 -18.28154 -17.00940 -16.52131 -16.09827 -15.44430 -15.39258 -15.06700 -14.25369 -14.17236 -14.02423 -13.46814 -13.10167 -12.95833 -12.90417 -12.38588 -12.18568 -12.14921 -11.89811 -11.83177 -11.53216 -11.37548 -11.27220 -11.06573 -10.86998 -10.80604 -10.53312 -10.52162 -10.13644 -9.60355 -8.84953 -8.54225 -8.49417 -8.41782 -7.60170 -6.02469 -4.07178 0.89962 1.51540 1.91748 2.64998 3.31050 3.37600 3.41554 3.50862 4.01526 4.46241 4.64773 4.73013 5.00808 5.04405 5.06021 5.24762 5.26645 5.31449 5.42195 5.45586 5.57206 5.61828 5.66504 5.70207 5.74289 5.89274 5.95136 6.05698 6.19692 6.22994 6.29772 6.44938 6.49751 7.09115 7.47284 7.57982 7.94261 8.25938 8.46846 8.92886 9.15170 9.57973 11.05634 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.003098 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.438796 B = 9035.929324 C = 9620.571769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.189 4.189 3 C -0.137 4.137 4 C -0.142 4.142 5 C -0.164 4.164 6 C -0.050 4.050 7 C -0.098 4.098 8 C -0.139 4.139 9 C 0.502 3.498 10 O -0.543 6.543 11 N -0.606 5.606 12 C 0.084 3.916 13 C 0.244 3.756 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 S 0.095 5.905 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 6.849 -18.783 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.306 4.306 3 C -0.168 4.168 4 C -0.171 4.171 5 C -0.281 4.281 6 C -0.090 4.090 7 C -0.136 4.136 8 C -0.179 4.179 9 C 0.288 3.712 10 O -0.420 6.420 11 N -0.338 5.338 12 C -0.060 4.060 13 C 0.125 3.875 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 S 0.359 5.641 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.780 5.456 -18.091 22.812 hybrid contribution 0.263 0.512 0.393 0.697 sum -12.517 5.968 -17.697 22.483 Atomic orbital electron populations 1.20310 0.88048 1.03098 1.02481 1.24451 0.99852 0.95880 1.10453 1.20043 0.92992 0.99066 1.04667 1.20064 0.96177 0.95983 1.04898 1.24489 0.98678 0.96362 1.08572 1.20238 0.89171 1.01242 0.98300 1.21339 0.94961 1.02890 0.94422 1.21699 0.97608 1.02629 0.95999 1.20372 0.82036 0.78113 0.90649 1.90667 1.53921 1.51026 1.46432 1.48182 1.13370 1.63071 1.09166 1.21624 0.94567 1.00247 0.89560 1.19277 0.94919 0.97476 0.75848 1.21441 1.38112 0.98324 0.98529 0.92517 1.24947 0.95103 0.97728 0.96414 1.69940 1.40664 1.35205 1.07666 0.86494 0.78740 0.84193 0.77986 1.20650 1.21067 1.19879 1.84302 0.96767 1.09526 1.73502 0.90970 0.91377 0.90672 0.84646 0.84408 0.90795 0.89942 0.90883 0.90971 0.89536 0.89645 0.93840 0.90891 0.92429 0.95096 0.93883 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.38 36.01 0.37 -0.23 16 2 C -0.19 -1.96 6.51 -36.00 -0.23 -2.19 16 3 C -0.14 -1.43 10.05 -41.21 -0.41 -1.84 16 4 C -0.14 -1.56 10.05 -41.21 -0.41 -1.97 16 5 C -0.16 -1.90 5.76 -36.00 -0.21 -2.11 16 6 C -0.05 -0.54 5.71 -27.88 -0.16 -0.70 16 7 C -0.10 -1.37 4.49 -26.73 -0.12 -1.48 16 8 C -0.14 -1.99 4.25 -27.88 -0.12 -2.11 16 9 C 0.50 10.55 7.67 -10.98 -0.08 10.46 16 10 O -0.54 -13.97 15.56 5.56 0.09 -13.88 16 11 N -0.61 -13.07 2.86 -182.95 -0.52 -13.60 16 12 C 0.08 1.33 10.24 59.85 0.61 1.94 16 13 C 0.24 6.54 5.16 -5.19 -0.03 6.51 16 14 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 18 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 22 S 0.09 1.07 23.31 -107.50 -2.51 -1.43 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 33 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.06 0.73 6.44 -51.92 -0.33 0.39 16 37 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -34.20 343.80 -9.39 -43.59 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.13 Total: -3.09 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.21 Total: -7.60 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.21 Total: -39.91 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.20 -9.39 -43.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079530970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.496 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds