Wall clock time and date at job start Tue Mar 31 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20415 * 2 1 4 4 C 1.38425 * 114.92174 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20296 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46797 * 90.00752 * 6 5 4 8 8 C 1.53001 * 109.46880 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47033 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99490 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00088 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00150 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00182 * 179.97438 * 11 9 8 14 14 C 1.50705 * 109.46980 * 89.99962 * 13 11 9 15 15 H 1.08002 * 119.99686 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00020 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99814 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00229 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47043 * 90.00176 * 18 16 14 20 20 H 1.48500 * 109.47032 * 210.00135 * 18 16 14 21 21 H 1.48497 * 109.46804 * 330.00073 * 18 16 14 22 22 S 1.75887 * 125.19945 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46776 * 89.99460 * 1 2 3 24 24 H 1.08999 * 109.46856 * 209.99477 * 1 2 3 25 25 H 1.09002 * 109.46917 * 329.99965 * 1 2 3 26 26 H 1.08001 * 122.54283 * 0.02562 * 3 2 1 27 27 H 1.07997 * 122.54292 * 179.73691 * 4 3 2 28 28 H 1.08998 * 109.47062 * 210.00206 * 6 5 4 29 29 H 1.08994 * 109.47215 * 330.00270 * 6 5 4 30 30 H 1.08998 * 109.46869 * 299.99573 * 7 6 5 31 31 H 1.09002 * 109.47526 * 60.00122 * 7 6 5 32 32 H 1.08998 * 109.47021 * 299.99480 * 8 7 6 33 33 H 1.08999 * 109.47637 * 59.99536 * 8 7 6 34 34 H 1.08999 * 109.47090 * 89.99951 * 12 11 9 35 35 H 1.08993 * 109.47631 * 210.00630 * 12 11 9 36 36 H 1.09007 * 109.46853 * 330.00531 * 12 11 9 37 37 H 1.08997 * 109.47008 * 209.99559 * 13 11 9 38 38 H 1.08999 * 109.47027 * 330.00013 * 13 11 9 39 39 H 0.97006 * 119.99715 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3861 -0.9771 -0.0016 7 6 5.8647 -1.1560 1.4406 8 6 7.2974 -1.6928 1.4396 9 6 7.7692 -1.8684 2.8601 10 8 7.0321 -1.5910 3.7824 11 7 9.0100 -2.3337 3.1055 12 6 9.9001 -2.6693 1.9913 13 6 9.4688 -2.5039 4.4863 14 6 9.1268 -3.8925 4.9617 15 1 8.6190 -4.5796 4.3011 16 6 9.4623 -4.2857 6.2399 17 7 10.0803 -3.4487 7.0444 18 14 9.0379 -6.0067 6.8294 19 1 10.1608 -6.9274 6.5185 20 1 8.8075 -5.9847 8.2963 21 1 7.8081 -6.4760 6.1421 22 16 2.5209 -1.4373 -0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8670 2.0895 0.0004 27 1 4.3721 1.6349 -0.0048 28 1 5.4132 -1.9382 -0.5152 29 1 6.0384 -0.2717 -0.5161 30 1 5.8376 -0.1950 1.9542 31 1 5.2124 -1.8616 1.9552 32 1 7.3250 -2.6538 0.9258 33 1 7.9496 -0.9870 0.9251 34 1 10.4819 -1.7904 1.7136 35 1 10.5742 -3.4707 2.2934 36 1 9.3063 -2.9965 1.1377 37 1 10.5483 -2.3602 4.5308 38 1 8.9778 -1.7699 5.1253 39 1 10.3166 -3.7255 7.9436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079530970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:03 Heat of formation + Delta-G solvation = -45.317809 kcal Electronic energy + Delta-G solvation = -18883.779203 eV Core-core repulsion = 15916.492553 eV Total energy + Delta-G solvation = -2967.286650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65575 -39.01942 -36.67849 -35.85071 -34.72118 -32.77726 -30.46953 -29.14767 -27.29454 -26.22612 -24.73618 -23.70296 -22.42972 -20.00136 -19.61752 -18.71420 -17.97822 -17.54130 -17.05495 -16.74232 -16.27446 -15.92243 -15.36156 -14.90813 -14.51389 -14.31014 -14.16840 -13.92881 -13.75739 -13.46557 -13.41788 -13.33409 -13.15840 -12.87667 -12.72433 -12.54366 -12.41296 -12.31438 -12.20614 -12.12275 -11.73585 -11.68581 -11.48941 -10.65772 -10.57200 -9.40209 -9.39088 -9.30614 -8.23884 -6.39246 0.08581 0.71203 1.10637 1.34760 1.38273 1.48627 1.84564 1.88521 2.33080 2.49804 3.05216 3.75592 3.77568 4.01054 4.06042 4.27800 4.38633 4.42727 4.50749 4.60452 4.70743 4.72947 4.73480 4.76745 4.82274 4.89496 4.98551 5.04792 5.10406 5.14352 5.22819 5.33227 5.38620 5.41972 5.55731 5.68186 5.85095 6.05155 6.68865 6.82268 7.27368 7.52314 8.83178 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.003098 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.438796 B = 9035.929324 C = 9620.571769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.190 4.190 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.182 4.182 6 C -0.039 4.039 7 C -0.091 4.091 8 C -0.122 4.122 9 C 0.488 3.512 10 O -0.605 6.605 11 N -0.614 5.614 12 C 0.078 3.922 13 C 0.257 3.743 14 C -0.543 4.543 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.273 1.273 22 S 0.063 5.937 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.023 0.977 38 H -0.006 1.006 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 6.369 -21.181 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.307 4.307 3 C -0.180 4.180 4 C -0.176 4.176 5 C -0.299 4.299 6 C -0.078 4.078 7 C -0.130 4.130 8 C -0.161 4.161 9 C 0.278 3.722 10 O -0.487 6.487 11 N -0.345 5.345 12 C -0.064 4.064 13 C 0.135 3.865 14 C -0.582 4.582 15 H 0.071 0.929 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.198 1.198 22 S 0.327 5.673 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.173 0.827 27 H 0.170 0.830 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.012 0.988 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.966 4.973 -20.547 24.800 hybrid contribution 0.312 0.743 1.145 1.400 sum -12.654 5.716 -19.402 23.858 Atomic orbital electron populations 1.20422 0.86184 1.03799 1.03632 1.24850 1.01152 0.95104 1.09603 1.20345 0.92923 1.00082 1.04691 1.20376 0.96953 0.96227 1.04038 1.24660 0.98961 0.96598 1.09699 1.20175 0.89034 1.02737 0.95899 1.21233 0.94462 1.00913 0.96380 1.21708 0.97955 1.05242 0.91220 1.21645 0.81059 0.76480 0.93044 1.90633 1.55513 1.53480 1.49041 1.48248 1.14695 1.63107 1.08496 1.21956 0.94482 1.01367 0.88612 1.18741 0.93728 0.95330 0.78691 1.21715 1.38269 0.99106 0.99083 0.92917 1.25904 0.94751 1.02210 0.96501 1.70061 1.41442 1.37348 1.08116 0.85389 0.78888 0.79012 0.77366 1.18580 1.20586 1.19802 1.84360 0.97886 1.10970 1.74112 0.89519 0.91267 0.89341 0.82653 0.83027 0.89417 0.87370 0.92880 0.94036 0.86608 0.85685 0.91012 0.91864 0.88314 0.95902 0.98751 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 71.24 0.74 -0.36 16 2 C -0.19 -3.72 6.51 24.59 0.16 -3.56 16 3 C -0.15 -2.90 10.05 21.22 0.21 -2.69 16 4 C -0.15 -3.01 10.05 21.22 0.21 -2.80 16 5 C -0.18 -4.01 5.76 24.59 0.14 -3.87 16 6 C -0.04 -0.75 5.71 29.85 0.17 -0.58 16 7 C -0.09 -2.47 4.49 30.60 0.14 -2.33 16 8 C -0.12 -3.17 4.25 29.85 0.13 -3.05 16 9 C 0.49 20.55 7.67 87.66 0.67 21.22 16 10 O -0.60 -32.59 15.56 -3.02 -0.05 -32.64 16 11 N -0.61 -26.46 2.86 -851.12 -2.43 -28.89 16 12 C 0.08 2.26 10.24 127.77 1.31 3.57 16 13 C 0.26 14.29 5.16 85.63 0.44 14.73 16 14 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.01 0.30 5.46 84.65 0.46 0.76 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 18 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 22 S 0.06 1.40 23.31 -56.49 -1.32 0.08 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 32 H 0.12 2.41 7.40 -2.39 -0.02 2.40 16 33 H 0.13 2.35 8.11 -2.39 -0.02 2.33 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 36 H 0.10 2.05 6.44 -2.38 -0.02 2.04 16 37 H 0.02 1.28 8.07 -2.39 -0.02 1.27 16 38 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 39 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -78.96 343.80 4.56 -74.40 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.02 Total: 7.34 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.03 Total: -10.85 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.15 Total: -86.10 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.32 Total: 0.08 kcal Total: -78.96 4.56 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079530970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.079 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds